# This output was generated with AUGUSTUS (version 2.5.5). # AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mario.stanke@uni-greifswald.de) # and Oliver Keller (keller@cs.uni-goettingen.de). # Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), # Using native and syntenically mapped cDNA alignments to improve de novo gene finding # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 # reading in the file jeff_cdna.hints.E.gff ... # Setting 1group1gene for E. # Sources of extrinsic information: M E # Have extrinsic information about 18890 sequences (in the specified range). # arabidopsis version. Use default transition matrix. # WARNING: extrinsic information given but not on any of the sequences in the input set! # Maybe different sequence names? # We have hints for 0 sequences and for 0 of the sequences in the input set. # # ----- prediction on sequence number 2 (length = 274525, name = C.avellana_Jefferson_00002) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 2 on both strands # start gene g3 C.avellana_Jefferson_00002 AUGUSTUS gene 783 2551 0.07 - . g3 C.avellana_Jefferson_00002 AUGUSTUS transcript 783 2551 0.07 - . g3.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 783 783 . - . transcript_id "g3.t1"; gene_id "g3"; C.avellana_Jefferson_00002 AUGUSTUS exon 783 1783 . - . transcript_id "g3.t1"; gene_id "g3"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 1476 1478 . - 0 transcript_id "g3.t1"; gene_id "g3"; C.avellana_Jefferson_00002 AUGUSTUS intron 1784 2177 0.38 - . transcript_id "g3.t1"; gene_id "g3"; C.avellana_Jefferson_00002 AUGUSTUS CDS 1476 1783 0.38 - 2 transcript_id "g3.t1"; gene_id "g3"; C.avellana_Jefferson_00002 AUGUSTUS CDS 2178 2475 0.46 - 0 transcript_id "g3.t1"; gene_id "g3"; C.avellana_Jefferson_00002 AUGUSTUS exon 2178 2551 . - . transcript_id "g3.t1"; gene_id "g3"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 2473 2475 . - 0 transcript_id "g3.t1"; gene_id "g3"; C.avellana_Jefferson_00002 AUGUSTUS tss 2551 2551 . - . transcript_id "g3.t1"; gene_id "g3"; # protein sequence = [MNHPHGQGDGPTTLKSTKXXXXXXXXXXFGFWPFGVGRTTPKVWPGGGFSHPIPALGVVSTTSKPLGVVWPPPKDLNP # NXXXXXXXXLWGWPDCPLGHRAIVAKSIMRLGMWEPAAAEVLAAYFGVISGQEQRVQQLIVEGDAKQITDAIQDGGQNHSLVGHLIDDVRLGLNAIPK # WKVEHVNREANKVAYRLAKLALTQA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g3 ### # start gene g4 C.avellana_Jefferson_00002 AUGUSTUS gene 3406 3880 0.1 + . g4 C.avellana_Jefferson_00002 AUGUSTUS transcript 3406 3880 0.1 + . g4.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 3406 3406 . + . transcript_id "g4.t1"; gene_id "g4"; C.avellana_Jefferson_00002 AUGUSTUS exon 3406 3880 . + . transcript_id "g4.t1"; gene_id "g4"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 3483 3485 . + 0 transcript_id "g4.t1"; gene_id "g4"; C.avellana_Jefferson_00002 AUGUSTUS CDS 3483 3788 0.93 + 0 transcript_id "g4.t1"; gene_id "g4"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 3786 3788 . + 0 transcript_id "g4.t1"; gene_id "g4"; C.avellana_Jefferson_00002 AUGUSTUS tts 3880 3880 . + . transcript_id "g4.t1"; gene_id "g4"; # protein sequence = [MHSGSHNFPKEEAGMARSSQGFCQRRPLWPTLLAGFSTMEALPVQFPSRGSHSWEHLSTLFLRRLFLPSRVTLPPFYY # SNSISNPMKKSSKPNLLCTIFPK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g4 ### # start gene g5 C.avellana_Jefferson_00002 AUGUSTUS gene 6008 8241 0.11 - . g5 C.avellana_Jefferson_00002 AUGUSTUS transcript 6008 8241 0.11 - . g5.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 6008 6008 . - . transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS exon 6008 7257 . - . transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 6142 6144 . - 0 transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS intron 7258 7336 0.9 - . transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS intron 7811 7917 0.59 - . transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS CDS 6142 7257 0.9 - 0 transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS CDS 7337 7810 0.69 - 0 transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS exon 7337 7810 . - . transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS CDS 7918 8112 0.38 - 0 transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS exon 7918 8241 . - . transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 8110 8112 . - 0 transcript_id "g5.t1"; gene_id "g5"; C.avellana_Jefferson_00002 AUGUSTUS tss 8241 8241 . - . transcript_id "g5.t1"; gene_id "g5"; # protein sequence = [MYSHNSQARVMASLLSLLTVLTVAQPPTPNTSYKPPVPLLPPPGLLMSAVIFPQTFGGAYVISIGHNLAPTTNTSYEP # PPLLPPPGLLMSAVIFPXXXXNQLMIIDTGSDITWFQCKPCNCYQMPGVFDPLNSTSISVVPCDSSACNQLQRHSCSKSQCQYEVDYLDNSFTNGSLV # LETLTFGSTAVLNVLTGCGHSNFGFMLGAHGLVGLGGGPLSLATQLRLMIIDTGSDITWFYCKPCNCYQMPGVFDPLNSTSISMVPCDSTACNQLQRH # SCNKSQCQYEVEYLDGSFTNGSFVLETLTFGSTSVLNVFTACGHSNFGFMPGTHGLVGLGGGPLSLATQLRVHGRAGIFSYCLPNLHGGLLGWFNFSL # PDVVLPTGTAWIPLLRTTKIKTYYLVELSGLGIGNMQLPIPQNSFKGGAIIDSGTTYTYLPRLVYEAIRNAYLAKTVNLPRAPATSLFDTCYNLSGLE # SVQVPNVSFFFSAGPILTLQMWNILVEQERYVGESIFCFAFIPTSDVTSIIGNTQLAGIQTSFDAEAGYVGFGPSICGPPESSPHCHGHWPPRRSIAL # ENYIPPNPLFLCLFTCFYVLIISILD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g5 ### # start gene g6 C.avellana_Jefferson_00002 AUGUSTUS gene 28216 29036 0.33 + . g6 C.avellana_Jefferson_00002 AUGUSTUS transcript 28216 29036 0.33 + . g6.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 28216 28216 . + . transcript_id "g6.t1"; gene_id "g6"; C.avellana_Jefferson_00002 AUGUSTUS exon 28216 29036 . + . transcript_id "g6.t1"; gene_id "g6"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 28308 28310 . + 0 transcript_id "g6.t1"; gene_id "g6"; C.avellana_Jefferson_00002 AUGUSTUS CDS 28308 28883 1 + 0 transcript_id "g6.t1"; gene_id "g6"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 28881 28883 . + 0 transcript_id "g6.t1"; gene_id "g6"; C.avellana_Jefferson_00002 AUGUSTUS tts 29036 29036 . + . transcript_id "g6.t1"; gene_id "g6"; # protein sequence = [MSSIVEGRNDKKRVRGDSDEFSESDSPEVKRLREDLLGFLDDTEADPTIQDLDSVMKSFEEEIAQACTSSPVPVVDLT # LDSGESQPELGYLLEASDDELGLPPSGNSLGEDVKNSETELGRDSSYSYGIGELWGFEDQIPSYYSFEFGAGNGYDNTSEYVAFDGLFEHSDVYFDSS # DVSDPSWRHETLPAQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g6 ### # start gene g7 C.avellana_Jefferson_00002 AUGUSTUS gene 34246 42094 0.11 + . g7 C.avellana_Jefferson_00002 AUGUSTUS transcript 34246 42094 0.11 + . g7.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 34246 34246 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 34246 34442 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 34377 34379 . + 0 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS intron 34443 35517 0.84 + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS intron 35680 37028 0.86 + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS intron 37083 38524 0.9 + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS intron 38602 39176 0.93 + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS intron 39359 39820 0.48 + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS intron 39988 40069 0.99 + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS intron 40142 40235 0.99 + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS intron 40284 40379 0.99 + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS intron 40490 40579 1 + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS intron 40659 41578 0.68 + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 34377 34442 0.95 + 0 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 35518 35679 0.88 + 0 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 35518 35679 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 37029 37082 0.97 + 0 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 37029 37082 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 38525 38601 1 + 0 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 38525 38601 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 39177 39358 0.47 + 1 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 39177 39358 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 39821 39987 0.5 + 2 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 39821 39987 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 40070 40141 1 + 0 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 40070 40141 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 40236 40283 0.99 + 0 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 40236 40283 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 40380 40489 1 + 0 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 40380 40489 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 40580 40658 1 + 1 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 40580 40658 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS CDS 41579 41695 0.68 + 0 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS exon 41579 42094 . + . transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 41693 41695 . + 0 transcript_id "g7.t1"; gene_id "g7"; C.avellana_Jefferson_00002 AUGUSTUS tts 42094 42094 . + . transcript_id "g7.t1"; gene_id "g7"; # protein sequence = [MKIFVKTLKGTHFEIEVKPEDSVADVKKSIESVQGADVYPAAQQMLIHQGKVLKDGTTLDENKVAENSFVVIMLTKNK # SSSSEASTTSTAAASKTPQTSAPPPTTPASTAPQAPVVTSELSEGDVYGQAASNLLAGNNLEGAIQQILDMGGGTWDRDIVVRALRAAFNNPERAVEY # LYSVVRKYQGIPEQAEVPPVARVPASGSPANAPAQPPQPAQPAAVPSSGPNANPLDLFPQGLPNMGSGAAAGASTLDFLRNSQQFQALRAVVQANPQI # LQPMLQELGKQNPNLLRLIQEHQADFLRLINEPIEGGEGNALGQLTAGMPQAITVTPEEREAIERLEAMGFDRATVLEVFFACNKNEELAANYLLDHM # HEFED] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/11 # CDS introns: 0/10 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g7 ### # start gene g8 C.avellana_Jefferson_00002 AUGUSTUS gene 43516 46018 0.06 + . g8 C.avellana_Jefferson_00002 AUGUSTUS transcript 43516 46018 0.06 + . g8.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 43516 43516 . + . transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS exon 43516 43697 . + . transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 43553 43555 . + 0 transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS intron 43698 43803 0.99 + . transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS intron 44022 44263 0.99 + . transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS intron 44824 45017 1 + . transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS CDS 43553 43697 0.82 + 0 transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS CDS 43804 44021 0.99 + 2 transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS exon 43804 44021 . + . transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS CDS 44264 44823 0.92 + 0 transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS exon 44264 44823 . + . transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS CDS 45018 45885 1 + 1 transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS exon 45018 46018 . + . transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 45883 45885 . + 0 transcript_id "g8.t1"; gene_id "g8"; C.avellana_Jefferson_00002 AUGUSTUS tts 46018 46018 . + . transcript_id "g8.t1"; gene_id "g8"; # protein sequence = [MERSSTEVVEMENKEVIKEGKSEMEKMDELSDHFKRKKGGIITMPFIFATEFCEKLAVDGFSNNMANYLTQHLHMPIT # KAANTVTTFSGTAGLMPLLGAFIADSYAGPFWTITVASITCQIALVCLTLSASLPQLRPPPCAANQACQEANSREIAILYFSLLMVAIGSGGIRPCVA # AFGVNQFVGVEPKHKTKTWVFFNWYYFVMEASMLLSSTVLVYIQDNVGWGWGLGIPTAAMLFSIPIFVFGYPLYRILVPAGSPFTRLLQVTVAAFRKR # NVPFVSDPEMLYQNKEIDASISSDGMLHHTRQFQFLDKAAIVTVKDDIKATQKPNLWRLNTVHRVEELKSIMRMLPIWAAGIIFFAASAQQRTFSLQQ # ANAMDRQLTKSFQIPSASMFLFTVISMLTTIAFYDRVFVPFASKFTGLSQGITFLHRMGMGFFISIFATLVAGFIEVKRKKHAANLAKSTTLPLISVF # WLVPQYSLHGISEAFMAIGHLDFLYDQAPESMRSTAMALFWTANSAGDYTSTLLVSLVTKFSHWLPGKNLNNGKLEYFYWLITCLQVLNFVYYFLCAK # FFTSKSLQIQTNEGDDSKGKGLELENGV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g8 ### # start gene g9 C.avellana_Jefferson_00002 AUGUSTUS gene 54386 59233 0.05 + . g9 C.avellana_Jefferson_00002 AUGUSTUS transcript 54386 59233 0.05 + . g9.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 54386 54386 . + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS exon 54386 54496 . + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 54427 54429 . + 0 transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS intron 54497 54608 0.84 + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS intron 54783 54946 0.7 + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS intron 55479 56690 0.97 + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS intron 57069 58084 0.8 + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS intron 58334 58485 0.98 + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS CDS 54427 54496 0.81 + 0 transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS CDS 54609 54782 0.85 + 2 transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS exon 54609 54782 . + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS CDS 54947 55478 0.72 + 2 transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS exon 54947 55478 . + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS CDS 56691 57068 0.83 + 1 transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS exon 56691 57068 . + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS CDS 58085 58333 0.98 + 1 transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS exon 58085 58333 . + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS CDS 58486 58966 1 + 1 transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS exon 58486 59233 . + . transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 58964 58966 . + 0 transcript_id "g9.t1"; gene_id "g9"; C.avellana_Jefferson_00002 AUGUSTUS tts 59233 59233 . + . transcript_id "g9.t1"; gene_id "g9"; # protein sequence = [MEEIKGSHGRRRKGGLVTMPFIFANEVTEKLAVVGFSTNMISYLTSELHMPLTKAANTLTNLGGTASLTPLIGAFIAD # SYAVLPQLRPPPCKGDEVCKEADAGQVAILYVSLLLGALGSGGIRPCVVAFGADQFDETDPKQNTKTWTYFNWYYFVMGVSILVAVTVLVYIQDNIGW # GWGLGIPTIFMFMSIISFIFGYPLYRNLDPAGSPFTRLVQVLVAACRKRNLPMVSDPKLLYQNDELDASISMGGKLFHTKQMKFFDKAAIVTEEEKHL # KSGQTPNLWRLNTVHRVEELKSVIRMGPIWAAGILLITAYAQQNTFSLLQAKTMNRHLTKSFQIPAASMSVFTMLAMLSTIAFYDRVFVPVARRFSGL # DRGISFLLRMGIGEREWEVKEAIVTVKERQWGLVWLGVGALHRMXXXXCQVDIQVLESYTWHGNPPLSDMARGFDMSFFLCRLKVKVVSPHAVEAXER # EWEVKEAIVTLKGRQWGLVWLGVGALHRMXKNVALAHGLIDHPHSTIPISVFWLVPQYSLHGVAEAFMSIGHLEFFYDQAPESMRSSATALFWLSISF # GNYLSSLLVSMVHKFXXXXIPPSPYLSSGLCRSIAFMGWLKLSCPMGISSFSTTSLQKA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g9 ### # start gene g10 C.avellana_Jefferson_00002 AUGUSTUS gene 60906 63506 0.08 + . g10 C.avellana_Jefferson_00002 AUGUSTUS transcript 60906 63506 0.08 + . g10.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 60906 60906 . + . transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS exon 60906 61303 . + . transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 61073 61075 . + 0 transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS intron 61304 61793 0.79 + . transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS intron 61877 62240 0.8 + . transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS intron 62387 63268 0.93 + . transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS CDS 61073 61303 0.83 + 0 transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS CDS 61794 61876 0.8 + 0 transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS exon 61794 61876 . + . transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS CDS 62241 62386 0.98 + 1 transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS exon 62241 62386 . + . transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS CDS 63269 63375 0.99 + 2 transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS exon 63269 63506 . + . transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 63373 63375 . + 0 transcript_id "g10.t1"; gene_id "g10"; C.avellana_Jefferson_00002 AUGUSTUS tts 63506 63506 . + . transcript_id "g10.t1"; gene_id "g10"; # protein sequence = [MDGVAVESFNDGSVTPLSSIAEAFEELARLLKSHKEGSKEEARLRLDTFCDACSWVSVLFECLGIAFKFAELEYVAKV # RNLKEASRTHSTLXXXXYLISMFQMALDHSLKAAASTAYAQVCAPYHSWTVRTAVAAGMYALPTRDKLLHKLNETDQSAEKKMRRYVSAVLPVIAYID # KLYRSRNISLDW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g10 ### # start gene g11 C.avellana_Jefferson_00002 AUGUSTUS gene 63956 68141 0.06 - . g11 C.avellana_Jefferson_00002 AUGUSTUS transcript 63956 68141 0.06 - . g11.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 63956 63956 . - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS exon 63956 64469 . - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 64365 64367 . - 0 transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS intron 64470 66339 0.98 - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS intron 66424 66535 0.99 - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS intron 66607 66692 0.99 - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS intron 66781 66908 0.99 - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS intron 67101 67201 1 - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS CDS 64365 64469 0.93 - 0 transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS CDS 66340 66423 0.99 - 0 transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS exon 66340 66423 . - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS CDS 66536 66606 0.99 - 2 transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS exon 66536 66606 . - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS CDS 66693 66780 0.99 - 0 transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS exon 66693 66780 . - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS CDS 66909 67100 1 - 0 transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS exon 66909 67100 . - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS CDS 67202 68107 0.97 - 0 transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS exon 67202 68141 . - . transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 68105 68107 . - 0 transcript_id "g11.t1"; gene_id "g11"; C.avellana_Jefferson_00002 AUGUSTUS tss 68141 68141 . - . transcript_id "g11.t1"; gene_id "g11"; # protein sequence = [MALLVRXXXXXXXXXXXXXXXXXXXTQSRSSFRAKSPRRSRPILTVQAKIREIFMPALSSTMTEGKIVSWIKAEGDRL # SKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAPIGLLAESEEEIAEARAKAASKSSSSSPKPATSPPETATSSPAPAIPQPPPAKPVSA # GPRKIVATPFAKKLAKQHKVDIESVVGSGPFGRITPADVEAAAGITPSKSSTGGGANAGINIAAKPAAPKPAAPTAAPPPIPGSTVVPFTTMQAAVSK # NMLESLTVPTFRVGYPVTTNALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNATCKDGKSFTYNSSINIAVAVAIDGGLITPVLQDADKLDLYLL # SEKWKELLKKARAKQLQPNEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFSVKSKMLVNVTADHRIVYGADLAAFLQTFA # KIVENPESLTL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g11 ### # start gene g12 C.avellana_Jefferson_00002 AUGUSTUS gene 73946 82155 0.01 + . g12 C.avellana_Jefferson_00002 AUGUSTUS transcript 73946 82155 0.01 + . g12.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 73946 73946 . + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS exon 73946 74437 . + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 74155 74157 . + 0 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS intron 74438 75722 0.89 + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS intron 75815 76207 0.7 + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS intron 77051 77170 0.94 + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS intron 77388 77727 1 + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS intron 78219 78819 0.66 + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS intron 78967 80444 0.62 + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS intron 80637 80721 0.64 + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS intron 80804 81700 0.75 + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS CDS 74155 74437 1 + 0 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS CDS 75723 75814 0.94 + 2 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS exon 75723 75814 . + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS CDS 76208 77050 0.9 + 0 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS exon 76208 77050 . + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS CDS 77171 77387 0.96 + 0 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS exon 77171 77387 . + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS CDS 77728 78218 0.66 + 2 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS exon 77728 78218 . + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS CDS 78820 78966 0.85 + 0 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS exon 78820 78966 . + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS CDS 80445 80636 0.63 + 0 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS exon 80445 80636 . + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS CDS 80722 80803 0.64 + 0 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS exon 80722 80803 . + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS CDS 81701 81864 0.86 + 2 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS exon 81701 82155 . + . transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 81862 81864 . + 0 transcript_id "g12.t1"; gene_id "g12"; C.avellana_Jefferson_00002 AUGUSTUS tts 82155 82155 . + . transcript_id "g12.t1"; gene_id "g12"; # protein sequence = [MERLGAARETTSSSEYVSWEEVFVSSDKGRREVHYFLKRRDGTTDLVVIGKEKSLRHMSYHYAIRDRALLPSSSSLSK # LKSRREVVDWLNFIVTDSPPQHQDTSHLAGVFLDGRNACELDVQTLKVNDFVHVLAEEDKRLAAHLEDMYEDSRGNKMVVVRWFHKIDEVGVVLPPNF # NDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFLNEATHTRLEPFVCYKLFENDDVKPFDITQIKGYWKQEILVYMYTLSPSNAQGNSQHFDGLKAE # ENVNDTIGIRPKKRLCQSKEDDVHLQYTNRIEPMHATLEDVQNLCNSGIDRKCGTEICSIRGGGSAAILSKGDAKQNPLQYLTVGSQVEVLSQDSGIR # GCWFRALIIKKHKDKVKVQYKDILDATDESKKLEEWIIASRVAAPDHLGLRISGRTTVRPPPQCNKGRVSWAVDVGAVVDVWRHDGWWEGIVVQKEAE # DELHVYFPGEKQESIFGRDDLRHSQEWLGSGWVHVKDRPDLLNLILSSSETKPDAGKSSDGKPAQATVPYSRHSRQDETGSSDFRSDSEDDKAKLLEA # VRDLSKDDLLAQLRWKSSRKRRRGGGISVQKLRSKIISCERFLIPTSMKVDHENCKYMGDSLFSTSVVSSLSSLGQVDSGPVLLGLGGPAVFFMGLFK # LRIIWSPIVWDPYPSLCRRYDNWDRLGIEPDTLIALYEGPPLFEWLHNEGMALVDQQKKGLPGTGIRKSKSFLLSETSLASLESLTMPLVQEVVLSAD # IRCAECQKRVADIMARMNGTDSVVVNVLEKKVTLTSRYAGIGKSSTQQVAAVYRNPLDKVAMIRRIFRPSRR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g12 ### # start gene g13 C.avellana_Jefferson_00002 AUGUSTUS gene 85156 93327 0.07 + . g13 C.avellana_Jefferson_00002 AUGUSTUS transcript 85156 93327 0.07 + . g13.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 85156 85156 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 85156 85770 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 85399 85401 . + 0 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 85771 86350 0.96 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 87084 87491 0.71 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 87619 87735 0.97 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 87915 88500 0.98 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 88701 89363 0.97 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 89433 89942 0.98 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 90016 90585 0.87 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 90743 90864 0.53 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 91157 91239 1 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 91355 91815 0.97 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 91893 92151 0.99 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS intron 92227 92382 1 + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 85399 85770 0.99 + 0 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 86351 87083 0.83 + 0 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 86351 87083 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 87492 87618 0.83 + 2 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 87492 87618 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 87736 87914 0.98 + 1 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 87736 87914 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 88501 88700 1 + 2 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 88501 88700 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 89364 89432 0.98 + 0 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 89364 89432 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 89943 90015 0.87 + 0 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 89943 90015 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 90586 90742 1 + 2 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 90586 90742 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 90865 91156 0.53 + 1 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 90865 91156 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 91240 91354 0.98 + 0 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 91240 91354 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 91816 91892 1 + 2 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 91816 91892 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 92152 92226 0.99 + 0 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 92152 92226 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS CDS 92383 92571 0.98 + 0 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS exon 92383 93327 . + . transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 92569 92571 . + 0 transcript_id "g13.t1"; gene_id "g13"; C.avellana_Jefferson_00002 AUGUSTUS tts 93327 93327 . + . transcript_id "g13.t1"; gene_id "g13"; # protein sequence = [MDTDSHDSRLKNRRSLSPDDEAERSSKXXXXXXXXXXXXXXSKKHEEKSGREGEEINXXXXXXXXPVAVNITRPEDDV # EEGEILEEEGFGGGEHEIAEKRFESDDESGEIKSVGVRDESDKQNLGRRTEHQSSDREPSIHMEESAEKNGRNSKILVEDKSEDDLFTNLKLDKEDRA # CHWSRIGTKINNGVGSPRNSSVVPQDELNSRVSSEAHVNGDLGRESRKEDKKRESRSPSKGRSRQKSYYEDEKVGVDGSKLSHRSKSSSQSTGDRGEF # HARSRSRSIDHARARSRSLSIKEEETHLKKRQYCDNADSLHADKSKSLYDSDDERIVRKSMDGRHGSRDLVRDEERDNTTNYSRYIGEDRHRSRDRYK # HSRHSRHDEKEYNQYRTRNADSAKTPSSKSDLLEEKLKRDEDEQGDYEGNTLQFAEQEEEDLNRIKEESRRRRQVILEKYKSQQLQQPNEPQSEDVEK # DKEPAHDRDQSSAATLVVPEVGDGRSDGLDVYVAEPSFSVGKSPPQNGVATLERTSSAGLLGEGTPKSERSDDKFCDDIFGETPTGVRKSGKEDGVRI # ERSGLHDNWDDAEGYYSYRFGETLDGRYEVVAAHGKGVFSTVVRAKNLKAGNGEPDEVAIKIIRSNDTMYKAGMDELVILKKLVGADPDDKRHCVRFL # SSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVS # RFYRAPEIILGLPYDHPLDMWSVGCCLYELYTGKGAFTDQNFDQDLNFHATEEDPVTKKTIKRMILNIKPKDIGSIITGSPGEDPKMLVNFKDLLEKI # FVLDPDKRMTVSQALTHPFITGK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/13 # CDS introns: 0/12 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g13 ### # start gene g14 C.avellana_Jefferson_00002 AUGUSTUS gene 104376 106842 0.07 + . g14 C.avellana_Jefferson_00002 AUGUSTUS transcript 104376 106842 0.07 + . g14.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 104376 104376 . + . transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS exon 104376 104621 . + . transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 104436 104438 . + 0 transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS intron 104622 104732 1 + . transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS intron 104837 105015 1 + . transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS intron 105188 105662 1 + . transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS intron 105786 105895 1 + . transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS CDS 104436 104621 0.99 + 0 transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS CDS 104733 104836 1 + 0 transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS exon 104733 104836 . + . transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS CDS 105016 105187 1 + 1 transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS exon 105016 105187 . + . transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS CDS 105663 105785 1 + 0 transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS exon 105663 105785 . + . transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS CDS 105896 106630 1 + 0 transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS exon 105896 106842 . + . transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 106628 106630 . + 0 transcript_id "g14.t1"; gene_id "g14"; C.avellana_Jefferson_00002 AUGUSTUS tts 106842 106842 . + . transcript_id "g14.t1"; gene_id "g14"; # protein sequence = [MGKKLDALLGRTFKASKFKPVVTLAFSRLAVFKTHCQVRCSQDRSDVVQLLQLGNHERALLRVEHVIKEQSRLDVYVM # IEAYLNILIERLNLIEQERECPDELKEPISSLIYAASRVGDFPELQEIRSILTSRFGKEFANRAIDLRNNCGVNLTMITKLSTRQPNLESRMKVLKEI # ASENNIVLQLEEAGSISNVESMDVNKKQNQHEPNTSANSGNTNVGDNLQILHEEIEKDDRFSDSMKTRRKYRDVAAAAQAAFESAAYAAEAARAAVEL # SRSEPHDPDDQGSPSTGQGKVLNMHGIVKPEFESINEEILYENRAEEMKLKNAVELKRSISASSSNSSEYISKVTAVSSDDVQDQGDPFDKELHFDES # DNETENEQSSISPHKQIPSRSQVGLKVESSLRNPIGHVAEGSGAHSAHRINIEKRPISVRTRQVRGY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g14 ### # start gene g15 C.avellana_Jefferson_00002 AUGUSTUS gene 106933 109731 0.07 - . g15 C.avellana_Jefferson_00002 AUGUSTUS transcript 106933 109731 0.07 - . g15.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 106933 106933 . - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS exon 106933 107938 . - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 107840 107842 . - 0 transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS intron 107939 108018 1 - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS intron 108208 108311 0.83 - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS intron 108383 108597 0.97 - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS intron 108866 109397 0.99 - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS intron 109424 109521 1 - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS CDS 107840 107938 0.98 - 0 transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS CDS 108019 108207 0.84 - 0 transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS exon 108019 108207 . - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS CDS 108312 108382 0.99 - 2 transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS exon 108312 108382 . - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS CDS 108598 108865 0.97 - 0 transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS exon 108598 108865 . - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS CDS 109398 109423 0.99 - 2 transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS exon 109398 109423 . - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS CDS 109522 109549 1 - 0 transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS exon 109522 109731 . - . transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 109547 109549 . - 0 transcript_id "g15.t1"; gene_id "g15"; C.avellana_Jefferson_00002 AUGUSTUS tss 109731 109731 . - . transcript_id "g15.t1"; gene_id "g15"; # protein sequence = [MAPRSDSTEAIVLNFVNEQNKPLNSQNVADSLQKFKLKKTAIQKVLDALADSGQISFKEYGKQKIYLARQDRFDIPNN # EELNRMKEENAKLQEQLQEQRRAISEVEGEIRTLQSNLTLEQIRDREAKLRMEVKEMEDKIDKLRGGVTLVKPEDRKAVEDMYLEKLSHWRRRKRMFK # DLWDAITENSPKDLKEFKEELGIEYDEDVGISLQSYGDLVQHGKKRPRGQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g15 ### # start gene g16 C.avellana_Jefferson_00002 AUGUSTUS gene 110656 112728 0.13 + . g16 C.avellana_Jefferson_00002 AUGUSTUS transcript 110656 112728 0.13 + . g16.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 110656 110656 . + . transcript_id "g16.t1"; gene_id "g16"; C.avellana_Jefferson_00002 AUGUSTUS exon 110656 111100 . + . transcript_id "g16.t1"; gene_id "g16"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 110762 110764 . + 0 transcript_id "g16.t1"; gene_id "g16"; C.avellana_Jefferson_00002 AUGUSTUS intron 111101 111458 0.85 + . transcript_id "g16.t1"; gene_id "g16"; C.avellana_Jefferson_00002 AUGUSTUS CDS 110762 111100 0.94 + 0 transcript_id "g16.t1"; gene_id "g16"; C.avellana_Jefferson_00002 AUGUSTUS CDS 111459 111731 0.68 + 0 transcript_id "g16.t1"; gene_id "g16"; C.avellana_Jefferson_00002 AUGUSTUS exon 111459 112728 . + . transcript_id "g16.t1"; gene_id "g16"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 111729 111731 . + 0 transcript_id "g16.t1"; gene_id "g16"; C.avellana_Jefferson_00002 AUGUSTUS tts 112728 112728 . + . transcript_id "g16.t1"; gene_id "g16"; # protein sequence = [MTIVTTTYQASLCNYHSFFGSKPSLSLSHSQFPNPRHSKASSNAKTWPATTPPPLISNHVRTPACHAARRKPTIAATP # STEEGDDNSRRVLQIILWVAEGVYILWLFLLPYAPVCEAHANPKLFSCIPFCPKLLITVSTRAAVELTKVQDPIPNIGKKPNNGKMLRSSTEIPNKVK # LNLLWQLPSHGWNFLLLLQRKLLICLT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g16 ### # start gene g17 C.avellana_Jefferson_00002 AUGUSTUS gene 118496 123129 0.02 + . g17 C.avellana_Jefferson_00002 AUGUSTUS transcript 118496 123129 0.02 + . g17.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 118496 118496 . + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS exon 118496 118949 . + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 118580 118582 . + 0 transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS intron 118950 119216 0.85 + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS intron 119355 119458 0.97 + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS intron 119564 119662 0.5 + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS intron 119756 119867 0.62 + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS intron 120005 120096 0.98 + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS intron 120244 121151 0.13 + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS intron 121218 122230 0.14 + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS CDS 118580 118949 0.97 + 0 transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS CDS 119217 119354 0.86 + 2 transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS exon 119217 119354 . + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS CDS 119459 119563 0.53 + 2 transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS exon 119459 119563 . + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS CDS 119663 119755 0.38 + 2 transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS exon 119663 119755 . + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS CDS 119868 120004 0.86 + 2 transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS exon 119868 120004 . + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS CDS 120097 120243 0.58 + 0 transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS exon 120097 120243 . + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS CDS 121152 121217 0.19 + 0 transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS exon 121152 121217 . + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS CDS 122231 122878 0.96 + 0 transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS exon 122231 123129 . + . transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 122876 122878 . + 0 transcript_id "g17.t1"; gene_id "g17"; C.avellana_Jefferson_00002 AUGUSTUS tts 123129 123129 . + . transcript_id "g17.t1"; gene_id "g17"; # protein sequence = [MAAKIGSFRHSFAERSKERLLFRKGYSELGLNSSDSGDDGVKCRCFRILSDGIANFLFGLRDTSAKLYEMGRSDPRKV # FFAAKMGLALALVSLVIFFKESLQEVSQYSIWAILTVIVVFEFSVGATLNKGFNRALGTFSAGGLALGISELSARAGDFEEVILVISVFIAGFSASFA # KLYPTMKSYEYGFRVFLLTYCIVIVSGEGEDLHKLVVKNFKSVASSLEGWIKFCGGLNGCCVSGYLHCIEYERIPSKILTYEAYDDPMYSGYRSAVQS # SSQEESLLDFAIWEPPHGPYRTFNYPWRSYVKVSGALRHCAFMVMAMHGCILSEIQINQDLKSIISSYDKDVADAFAAAPPEKRLVFSSELQRVGTEG # AKVLRELGSKVEKMEKLSLKDILFEVHEAAEELQSKIDQKSYLLVNSESWEGVRQAKEFDDPVNFIDVKDNENKGLVINSLSETLDVQNPNMSVEPSI # PHWVSSESVLKKPMSWPRLQSFAGDAILAEESKVYESASSLSLATFSSLLIEFVARLHNLVDEFQELSEKANFKEPMDLSEAEEKIGFWTRLFWCFH] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g17 ### # start gene g18 C.avellana_Jefferson_00002 AUGUSTUS gene 124246 135824 0.01 + . g18 C.avellana_Jefferson_00002 AUGUSTUS transcript 124246 135824 0.01 + . g18.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 124246 124246 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 124246 124380 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 126872 127287 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 126895 126897 . + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 127288 127648 0.98 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 127896 129588 0.72 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 129702 131036 0.85 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 131117 131443 0.99 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 131586 131696 0.86 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 131778 133478 0.99 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 133584 133763 1 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 133947 134551 0.98 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 134645 135092 0.51 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 135233 135363 1 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS intron 135431 135604 1 + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 126895 127287 0.98 + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 127649 127895 1 + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 127649 127895 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 129589 129701 0.85 + 2 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 129589 129701 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 131037 131116 0.98 + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 131037 131116 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 131444 131585 0.86 + 1 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 131444 131585 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 131697 131777 1 + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 131697 131777 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 133479 133583 1 + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 133479 133583 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 133764 133946 0.98 + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 133764 133946 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 134552 134644 1 + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 134552 134644 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 135093 135232 0.51 + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 135093 135232 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 135364 135430 1 + 1 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 135364 135430 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS CDS 135605 135724 1 + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS exon 135605 135824 . + . transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 135722 135724 . + 0 transcript_id "g18.t1"; gene_id "g18"; C.avellana_Jefferson_00002 AUGUSTUS tts 135824 135824 . + . transcript_id "g18.t1"; gene_id "g18"; # protein sequence = [MYTADEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLNENNDDDDEVLLAMAEELGVFIPYV # GGVEHAHVLLPPLETLCTVEETCVREKAAESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPETLKIELRSIYSQSCQDDM # PMVRRSAAMNLGKFAATVESAHLKTDILSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCIAHILPVIVSFSQDKSWRVRYMVANQLYELCEAVGP # EPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFP # DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNLKRLAEEFGPE # WAMQHIIPQVLEMTNNPHYLHRMTILRAISLLASVVGSEITNSKLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDHSVVEKTIRPCLVDLSEDPDVD # VRFFANQALQSIDHVMMSS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/12 # CDS introns: 0/11 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g18 ### # start gene g19 C.avellana_Jefferson_00002 AUGUSTUS gene 141867 143351 0.14 - . g19 C.avellana_Jefferson_00002 AUGUSTUS transcript 141867 143351 0.14 - . g19.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 141867 141867 . - . transcript_id "g19.t1"; gene_id "g19"; C.avellana_Jefferson_00002 AUGUSTUS exon 141867 143351 . - . transcript_id "g19.t1"; gene_id "g19"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 142250 142252 . - 0 transcript_id "g19.t1"; gene_id "g19"; C.avellana_Jefferson_00002 AUGUSTUS CDS 142250 143278 0.97 - 0 transcript_id "g19.t1"; gene_id "g19"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 143276 143278 . - 0 transcript_id "g19.t1"; gene_id "g19"; C.avellana_Jefferson_00002 AUGUSTUS tss 143351 143351 . - . transcript_id "g19.t1"; gene_id "g19"; # protein sequence = [MAAISLDPTLSLQRIGKDSPHRHRAVIEEIEGLIRVYEDGHVERPQVVPCVTSTLSLELGVTSRDMVIDKFTNIWARF # YVPAAASSSHGNLPLLVYFHGGGFCIGSAAWSCYHEFLARLSAKAGCLIMSVNYRLAPENPLPAAYEDGLTALIWLKQQSLRGSSSDQYWWSSLCNFS # KIFLAGDSAGANIAHNVATRLCSNNAMSLTPLSLKGTILIQPFFGGEARTHSENYMVQPPRSALSLAASDAYWRLALPAGANRDHPWCNPSCKELKAV # KHLPAMVCISEMDILKDRNMELCRALGKSSEYVVYKGVGHAFQVLSRTQLSQIRTLEMVADIKAFITR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g19 ### # start gene g20 C.avellana_Jefferson_00002 AUGUSTUS gene 147166 148591 0.13 - . g20 C.avellana_Jefferson_00002 AUGUSTUS transcript 147166 148591 0.13 - . g20.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 147166 147166 . - . transcript_id "g20.t1"; gene_id "g20"; C.avellana_Jefferson_00002 AUGUSTUS exon 147166 147448 . - . transcript_id "g20.t1"; gene_id "g20"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 147372 147374 . - 0 transcript_id "g20.t1"; gene_id "g20"; C.avellana_Jefferson_00002 AUGUSTUS intron 147449 148279 0.57 - . transcript_id "g20.t1"; gene_id "g20"; C.avellana_Jefferson_00002 AUGUSTUS CDS 147372 147448 0.93 - 2 transcript_id "g20.t1"; gene_id "g20"; C.avellana_Jefferson_00002 AUGUSTUS CDS 148280 148469 0.81 - 0 transcript_id "g20.t1"; gene_id "g20"; C.avellana_Jefferson_00002 AUGUSTUS exon 148280 148591 . - . transcript_id "g20.t1"; gene_id "g20"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 148467 148469 . - 0 transcript_id "g20.t1"; gene_id "g20"; C.avellana_Jefferson_00002 AUGUSTUS tss 148591 148591 . - . transcript_id "g20.t1"; gene_id "g20"; # protein sequence = [MSTEIEESWAQEPSAPPQPPLSLDLDHPGPLTKQTNPASSNLNSHSPVPWSSGLCDCCNDVSSXWHGNIERQKRIAAS # PPAVQGGMAR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g20 ### # start gene g21 C.avellana_Jefferson_00002 AUGUSTUS gene 149457 153781 0.39 - . g21 C.avellana_Jefferson_00002 AUGUSTUS transcript 149457 153781 0.39 - . g21.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 149457 149457 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 149457 149873 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 149727 149729 . - 0 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS intron 149874 149988 0.93 - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS intron 150235 150325 1 - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS intron 150598 150696 1 - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS intron 150755 150871 0.99 - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS intron 150950 151594 0.91 - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS intron 151655 151965 0.87 - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS intron 152044 152658 1 - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS intron 152836 152950 1 - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS intron 153025 153171 0.98 - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS intron 153276 153544 1 - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 149727 149873 0.78 - 0 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 149989 150234 0.98 - 0 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 149989 150234 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 150326 150597 1 - 2 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 150326 150597 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 150697 150754 1 - 0 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 150697 150754 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 150872 150949 0.99 - 0 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 150872 150949 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 151595 151654 0.92 - 0 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 151595 151654 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 151966 152043 0.92 - 0 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 151966 152043 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 152659 152835 1 - 0 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 152659 152835 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 152951 153024 1 - 2 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 152951 153024 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 153172 153275 0.98 - 1 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 153172 153275 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS CDS 153545 153600 0.95 - 0 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS exon 153545 153781 . - . transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 153598 153600 . - 0 transcript_id "g21.t1"; gene_id "g21"; C.avellana_Jefferson_00002 AUGUSTUS tss 153781 153781 . - . transcript_id "g21.t1"; gene_id "g21"; # protein sequence = [MQSFKANPQLYCHSSYFHRGDGSGRDQTHFTDLGELEQSAAAFHHHDAVDLSPTSIFNVKSVSVAGVPNHLQYGALNT # SISCVDTGQQVVYQKGNITTGTKLGNGHHIESWGESGMAADTSQQTDTSTDVDTDDKNQFHGVHSGGLMAVDSMDQSKAKAGDQKTLRRLAQNREAAR # KSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGIFIASGFSGDHSRSITGNGALAFDMDYARWLDEHQRLISDLRSAVNSHMGDNELHLLVDGVMAH # HDEIFRLKSIGAKADVFHMLSGMWKTPAERCFMWLGGFRSSELLKILGSHLEPLTDQQVMGICNLQQSSQQAEDALSQGMEALQQSLVETLSSASLGP # AGSGNVADYMGQMAIAMGKLATLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRE] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/11 # CDS introns: 0/10 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g21 ### # start gene g22 C.avellana_Jefferson_00002 AUGUSTUS gene 156072 162281 0.05 - . g22 C.avellana_Jefferson_00002 AUGUSTUS transcript 156072 162281 0.05 - . g22.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 156072 156072 . - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS exon 156072 156356 . - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 156141 156143 . - 0 transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS intron 156357 157052 0.91 - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS intron 157287 158723 0.97 - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS intron 158841 158934 0.99 - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS intron 159160 159279 0.93 - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS intron 159464 160563 0.66 - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS intron 161025 161917 0.88 - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS CDS 156141 156356 0.95 - 0 transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS CDS 157053 157286 0.95 - 0 transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS exon 157053 157286 . - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS CDS 158724 158840 0.97 - 0 transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS exon 158724 158840 . - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS CDS 158935 159159 0.97 - 0 transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS exon 158935 159159 . - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS CDS 159280 159463 0.9 - 1 transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS exon 159280 159463 . - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS CDS 160564 161024 0.9 - 0 transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS exon 160564 161024 . - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS CDS 161918 161983 0.89 - 0 transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS exon 161918 162281 . - . transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 161981 161983 . - 0 transcript_id "g22.t1"; gene_id "g22"; C.avellana_Jefferson_00002 AUGUSTUS tss 162281 162281 . - . transcript_id "g22.t1"; gene_id "g22"; # protein sequence = [MSDSQSPTSSSFDSASGSAADQNVVRSRRSGDGAQTLASEPSRRWRDIFWLAIFMLHLVVLGLSLVVLGLNRYGKKDR # LNIDRYTPRYTEHHGGLTEDYWPMYAVAGGVGTVLGCTWLLFLGSQANQMMKVSVHILTTYLAVISVLCFWGKLFFWGVMSGIGAALQFLYVISVIDR # LPFTMLVLQKAVKMVWSLPKVMRIAYAFMLVMLLWMGLWSFGAAGVVASSMGDGQRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHGGHEPS # SIPSNSLMKSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGVRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVCGKSFNHSARDAWELFQS # TGVEALVAYDCSGAVLLMGTLLGGLVTGTCSGVWTWIKWRDKMSMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDSEFFDQMSEML # HQRLQYRSARAREVLTHNRFDGHTQEMLPA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g22 ### # start gene g23 C.avellana_Jefferson_00002 AUGUSTUS gene 164661 166451 0.13 - . g23 C.avellana_Jefferson_00002 AUGUSTUS transcript 164661 166451 0.13 - . g23.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 164661 164661 . - . transcript_id "g23.t1"; gene_id "g23"; C.avellana_Jefferson_00002 AUGUSTUS exon 164661 166451 . - . transcript_id "g23.t1"; gene_id "g23"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 164897 164899 . - 0 transcript_id "g23.t1"; gene_id "g23"; C.avellana_Jefferson_00002 AUGUSTUS CDS 164897 166357 1 - 0 transcript_id "g23.t1"; gene_id "g23"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 166355 166357 . - 0 transcript_id "g23.t1"; gene_id "g23"; C.avellana_Jefferson_00002 AUGUSTUS tss 166451 166451 . - . transcript_id "g23.t1"; gene_id "g23"; # protein sequence = [MRFLLHIIFFALFYTSATVGFVRSRSSPQSPKTTILDVAASIQKTQTVFATQALFNQQKPSFSAKSSLTLQLHSRMSV # QKHSHSDYRSLTLARLERDSARVRSLTARLDLALRGIGQSDLEPVDTRDGQGFAAEDIQGPVVSGTSEGSGEYFSRVGIGKPPSSVYMVLDTGSDVNW # LQCAPCADCYQQADPIFDPASSASYAPLSCEARQCRSLDVSECRNDTCLYEVSYGDGSYTVGDFVTETITLGTASVTNVAIGCGHNNEGLFVGAAGLL # GLGGGSLSFPSQLNASSFSYCLVDRDSDSASTLEFNSPLPPNAVTAPLHRNPQLDTFYYLGLTALSVGGELLPVPESSFQLDSTGNGGIIVDSGTAVT # RFQTDTYNSLRDAFVNGTRDLPSTNGVALFDTCFDLSSRSSVEVPTVAFHFPDGKVLPLPAKNYLIPIDSVGTFCFAFAPTSSALSIIGNVQQQGTRV # GFDITKSVVGFSPNKC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g23 ### # start gene g24 C.avellana_Jefferson_00002 AUGUSTUS gene 181350 184238 0.07 - . g24 C.avellana_Jefferson_00002 AUGUSTUS transcript 181350 184238 0.07 - . g24.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 181350 181350 . - . transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS exon 181350 181723 . - . transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 181580 181582 . - 0 transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS intron 181724 181815 0.94 - . transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS intron 182210 183264 0.88 - . transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS intron 183649 184032 0.93 - . transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS intron 184098 184171 1 - . transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS CDS 181580 181723 0.89 - 0 transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS CDS 181816 182209 0.95 - 1 transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS exon 181816 182209 . - . transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS CDS 183265 183648 0.93 - 1 transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS exon 183265 183648 . - . transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS CDS 184033 184097 0.93 - 0 transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS exon 184033 184097 . - . transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS CDS 184172 184195 1 - 0 transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS exon 184172 184238 . - . transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 184193 184195 . - 0 transcript_id "g24.t1"; gene_id "g24"; C.avellana_Jefferson_00002 AUGUSTUS tss 184238 184238 . - . transcript_id "g24.t1"; gene_id "g24"; # protein sequence = [MVSASSPKEVANSDSKWIEEEDTSRRAKWWGPGTMVLVISWCMTLNTMWQMIQLHECVPGTRFDRYIDLGRHAFGPKL # GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFMEITCTNCTQLKQSYWILIFGAIHFFLSQLPNFNSVAGVSLAAAVMSLSYSTIAWVGSLSRGQISNV # SYAYKKTSSADSMFRVFNALGQISFAFAGHAVALEIQATIPSTPERPSKVPMWKGALGAYFINAICYFPVALIGYWAFGQDVDDNVLMNLQKPAWLIA # SANLMVVIHVIGSYQVYAMPVFALLERMMVKKVNFPPGILLRLITRSAYVGEVLHCHFGNRI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g24 ### # start gene g25 C.avellana_Jefferson_00002 AUGUSTUS gene 189385 195818 0.02 - . g25 C.avellana_Jefferson_00002 AUGUSTUS transcript 189385 195818 0.02 - . g25.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 189385 189385 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS exon 189385 189672 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 189576 189578 . - 0 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS intron 189673 189791 0.79 - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS intron 189861 190425 0.83 - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS intron 190455 191767 0.71 - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS intron 192623 192707 1 - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS intron 192776 193422 0.96 - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS intron 193634 194007 0.65 - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS intron 194074 194208 0.38 - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS intron 194419 195399 0.39 - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS intron 195531 195697 0.28 - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS CDS 189576 189672 0.78 - 1 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS CDS 189792 189860 0.8 - 1 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS exon 189792 189860 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS CDS 190426 190454 0.83 - 0 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS exon 190426 190454 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS CDS 191768 192622 0.86 - 0 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS exon 191768 192622 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS CDS 192708 192775 1 - 2 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS exon 192708 192775 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS CDS 193423 193633 0.98 - 0 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS exon 193423 193633 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS CDS 194008 194073 0.64 - 0 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS exon 194008 194073 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS CDS 194209 194418 0.55 - 0 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS exon 194209 194418 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS CDS 195400 195530 0.3 - 2 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS exon 195400 195530 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS CDS 195698 195704 0.49 - 0 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS exon 195698 195818 . - . transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 195702 195704 . - 0 transcript_id "g25.t1"; gene_id "g25"; C.avellana_Jefferson_00002 AUGUSTUS tss 195818 195818 . - . transcript_id "g25.t1"; gene_id "g25"; # protein sequence = [MVGCLVQRTGWTRDVDIFLQWLSAIPFAGGGFNDAAIAEGLAEALMMFPIPPNGNKTQQNLDAQRHCILVAASNPYPL # PTPVYRPQVQNLDKSENMEEQTESRSSDAETVAKSFVHCSVSLSVVCPKQLPKIRAIYNAGKRNPRAADPAVDNVKNPQFLVLISENFMEARAVLSRS # GITSLPSNQSPVKMDMSSVTSVTGPPPTSISSANGSLMNRQPISVGNVPPATVKIEPSTVPSMAPDPAFFHIPSVARAASQAVPSLQTSSPSSASQEM # ITNNDNMQDLKPIVSSVPQSVRPVGPAPANVNILNNLSQARQVMNSAALTGGSSIGLQPMGQTPISMHMSNMISSGMASSVPASQNVFSSGQSGNTSI # SGSGALTGTGQVAQNSGLGSFTSATSNVSGNSNLGISQPMGNGNLQGGVSMGQSVPGMSQGNLSGAQMAQSGIGMNQNMMSGLGPSVVSSGNGTMIPT # PGMPQQVQSGMQSIGVNNNSAANMPLSQQTSGALQSAQSKYVKVWEGYRSATSSETLAANWPPTMQIVRLISQDHMNNRQYVGKADFLVFRAMNQHGF # LGQLQEKKLVSF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g25 ### # start gene g26 C.avellana_Jefferson_00002 AUGUSTUS gene 203613 207646 0.08 + . g26 C.avellana_Jefferson_00002 AUGUSTUS transcript 203613 207646 0.08 + . g26.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 203613 203613 . + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS exon 203613 203849 . + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 203805 203807 . + 0 transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS intron 203850 203927 0.97 + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS intron 204096 204497 0.99 + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS intron 204760 204848 1 + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS intron 205016 205103 1 + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS intron 205254 206900 0.98 + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS CDS 203805 203849 0.81 + 0 transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS CDS 203928 204095 0.97 + 0 transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS exon 203928 204095 . + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS CDS 204498 204759 0.99 + 0 transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS exon 204498 204759 . + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS CDS 204849 205015 1 + 2 transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS exon 204849 205015 . + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS CDS 205104 205253 0.98 + 0 transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS exon 205104 205253 . + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS CDS 206901 207248 0.94 + 0 transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS exon 206901 207646 . + . transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 207246 207248 . + 0 transcript_id "g26.t1"; gene_id "g26"; C.avellana_Jefferson_00002 AUGUSTUS tts 207646 207646 . + . transcript_id "g26.t1"; gene_id "g26"; # protein sequence = [MMLRFPDPMKLKTKKIVFEEVYAARDSATLEQMKELSSKRRVIEDSINESSSITDAIAREMSGGLTSHLQQDLQKLEE # YLPLLENLIFHTDLISSNGRMVRWTSDLKIRWISVLSSSSFFNLRGPKFYQIDNLRFELGMTLFLYGAILRERALEVLPTDLVQSATFFREAAGVYHH # LANEVLPSLLPALPADRPLEAISSVSTVMSLICLAEAQAVTIRKAEEKGTAIGLLAKLHHGVMQLLDEADGVLNTATREYRDISLRFVEFILSCKSLH # ELRSQKYLAESLKIAGQVGVAVGVLGQALINAKKSMPGEELWKSVFRKEIDDASAMLRKFEYENEFVWHEKIPSGDELPLPQGNKIVSIIPYRPKRWE # RELAFKI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g26 ### # start gene g27 C.avellana_Jefferson_00002 AUGUSTUS gene 209203 213586 0.21 + . g27 C.avellana_Jefferson_00002 AUGUSTUS transcript 209203 213586 0.21 + . g27.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 209203 209203 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS exon 209203 209382 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 209228 209230 . + 0 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS intron 209383 209467 0.97 + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS intron 209562 209656 0.98 + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS intron 209783 209907 0.99 + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS intron 210067 210291 0.95 + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS intron 210362 210446 0.93 + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS intron 210539 211555 0.81 + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS intron 211675 211852 1 + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS intron 212045 212138 1 + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS intron 212230 213270 1 + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS CDS 209228 209382 1 + 0 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS CDS 209468 209561 0.97 + 1 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS exon 209468 209561 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS CDS 209657 209782 0.98 + 0 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS exon 209657 209782 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS CDS 209908 210066 1 + 0 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS exon 209908 210066 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS CDS 210292 210361 0.95 + 0 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS exon 210292 210361 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS CDS 210447 210538 0.83 + 2 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS exon 210447 210538 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS CDS 211556 211674 0.94 + 0 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS exon 211556 211674 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS CDS 211853 212044 1 + 1 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS exon 211853 212044 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS CDS 212139 212229 1 + 1 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS exon 212139 212229 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS CDS 213271 213363 0.99 + 0 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS exon 213271 213586 . + . transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 213361 213363 . + 0 transcript_id "g27.t1"; gene_id "g27"; C.avellana_Jefferson_00002 AUGUSTUS tts 213586 213586 . + . transcript_id "g27.t1"; gene_id "g27"; # protein sequence = [MAVVQCNCVHSLCNPCRTRKPPLSPVSHIRFISTVSSPICASSKTLKLSTPRLSRAVSAVVSEENAVGSSSSGTGVFK # LTYLEGNSWLWEVAGLKILVDPILVGNLDFGIPWLYDAAKKFLKTFQLSDLPEIDCLLITQSLDDHCHLKTLKPLSEKSPNLRVIATPNAKPLLDPLF # RNPVLVVFLELYPSLSKPQHQRAMQRLLSVVPFKGCIGDQCSERGSHCILCPLPVTVTYLEPGQSSVIEARNGSKVGVQATAGPVLGPPWQRPENGYL # VNYPQGQLTLYYEPHCVYNKNFLEKERADIVITPVIKQLLPKFTLVSGQEEAVQLARVLHAKFIVPMKNGDLDSKGLLASIIQAEGTLESFKELLSKE # LPDAQVLEPTPGVPLEVLAPSDLP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g27 ### # start gene g28 C.avellana_Jefferson_00002 AUGUSTUS gene 220853 223508 0.21 - . g28 C.avellana_Jefferson_00002 AUGUSTUS transcript 220853 223508 0.21 - . g28.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 220853 220853 . - . transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS exon 220853 221529 . - . transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 221158 221160 . - 0 transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS intron 221530 221897 0.99 - . transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS intron 221975 222095 0.99 - . transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS intron 222427 222547 1 - . transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS intron 222835 222970 1 - . transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS CDS 221158 221529 0.99 - 0 transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS CDS 221898 221974 1 - 2 transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS exon 221898 221974 . - . transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS CDS 222096 222426 0.99 - 0 transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS exon 222096 222426 . - . transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS CDS 222548 222834 1 - 2 transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS exon 222548 222834 . - . transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS CDS 222971 223109 0.65 - 0 transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS exon 222971 223508 . - . transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 223107 223109 . - 0 transcript_id "g28.t1"; gene_id "g28"; C.avellana_Jefferson_00002 AUGUSTUS tss 223508 223508 . - . transcript_id "g28.t1"; gene_id "g28"; # protein sequence = [MEYYTEKMQHHGGLGFREYVDALEKERTKIQVFERELPLCLELVTQAIQTCRQQLSGTTTENNLHGQSESSEQTTSNE # VPPPVFEEFFPIKRSTSSEDDEEEQQLSHKANRETMVSNDSKKKSDWLSSVQLWNPTSDPPPKEDVPRKATVMEVKRNGGGGAFQPFQREKSVGKGNA # SVGKAPSSLAPEPAPAVAVATTSSSAETTTVGNGESGGSGRREDKEGQAQRKQRRNWSPELHKRFLNALQQLGGSQAATPKQIRELMKVDGLTNDEVK # SHLQKYRLHTRRPSPASYNNGNTQGPQVVVLGGIWVSAPAPEYAAMAATTASGEVTSVAAANGIYAPVAAPLPTVQHASASASSSQIQRLQQKQSEER # VCHSEQRGTCSSSPATSSSTHTTTNSPVF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g28 ### # start gene g29 C.avellana_Jefferson_00002 AUGUSTUS gene 229963 231150 0.11 + . g29 C.avellana_Jefferson_00002 AUGUSTUS transcript 229963 231150 0.11 + . g29.t1 C.avellana_Jefferson_00002 AUGUSTUS tss 229963 229963 . + . transcript_id "g29.t1"; gene_id "g29"; C.avellana_Jefferson_00002 AUGUSTUS exon 229963 230389 . + . transcript_id "g29.t1"; gene_id "g29"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 230015 230017 . + 0 transcript_id "g29.t1"; gene_id "g29"; C.avellana_Jefferson_00002 AUGUSTUS intron 230390 230576 0.95 + . transcript_id "g29.t1"; gene_id "g29"; C.avellana_Jefferson_00002 AUGUSTUS CDS 230015 230389 0.98 + 0 transcript_id "g29.t1"; gene_id "g29"; C.avellana_Jefferson_00002 AUGUSTUS CDS 230577 231038 0.97 + 0 transcript_id "g29.t1"; gene_id "g29"; C.avellana_Jefferson_00002 AUGUSTUS exon 230577 231150 . + . transcript_id "g29.t1"; gene_id "g29"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 231036 231038 . + 0 transcript_id "g29.t1"; gene_id "g29"; C.avellana_Jefferson_00002 AUGUSTUS tts 231150 231150 . + . transcript_id "g29.t1"; gene_id "g29"; # protein sequence = [MQTPSFTYISSSTESTACLEGDEEDDDSIFLSLGPPGQHIPNNIPSSSHPVSHQNPSSSEGGVTVALHIGPPITSAPN # STNPNVDVAAPLEGQYWIPSPTQILVGPTQFSCSVCNKTFNRYNNMQMHMWGHGSQYRKGAESLRGTKPASSMLRLPCYCCAEGCKNNIEHPRSRPLK # DFRTLQTHYKRKHGAKPYGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTNTTMELCDHHQVDHEEDDNDDEENE # IKVW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g29 ### # start gene g30 C.avellana_Jefferson_00002 AUGUSTUS gene 238435 242328 0.01 - . g30 C.avellana_Jefferson_00002 AUGUSTUS transcript 238435 242328 0.01 - . g30.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 238435 238435 . - . transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS exon 238435 239318 . - . transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 239253 239255 . - 0 transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS intron 239319 239396 0.94 - . transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS intron 239559 240708 0.94 - . transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS intron 240947 241731 1 - . transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS intron 241814 242139 0.57 - . transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS CDS 239253 239318 0.63 - 0 transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS CDS 239397 239558 0.94 - 0 transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS exon 239397 239558 . - . transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS CDS 240709 240946 0.94 - 1 transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS exon 240709 240946 . - . transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS CDS 241732 241813 1 - 2 transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS exon 241732 241813 . - . transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS CDS 242140 242269 0.57 - 0 transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS exon 242140 242328 . - . transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 242267 242269 . - 0 transcript_id "g30.t1"; gene_id "g30"; C.avellana_Jefferson_00002 AUGUSTUS tss 242328 242328 . - . transcript_id "g30.t1"; gene_id "g30"; # protein sequence = [MAFATSSATLQLASSLHGEALSSSSKSNIFMGRPVTFSASTFSGKQLHSRKQLVVFSKKLSGLAEAMRIKRERELKIT # TKGIRSPPLRRGKVSPRLPVPDHIPKPPYVGSNLLPEIASEYQTHDSEGIACMRAACELAARVLDNAGKLVRPSVTTNEIDKAVHQMIIDAGAYPSPL # GYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNVCFFLSY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g30 ### # start gene g31 C.avellana_Jefferson_00002 AUGUSTUS gene 249352 250758 0.29 - . g31 C.avellana_Jefferson_00002 AUGUSTUS transcript 249352 250758 0.29 - . g31.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 249352 249352 . - . transcript_id "g31.t1"; gene_id "g31"; C.avellana_Jefferson_00002 AUGUSTUS exon 249352 250758 . - . transcript_id "g31.t1"; gene_id "g31"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 249572 249574 . - 0 transcript_id "g31.t1"; gene_id "g31"; C.avellana_Jefferson_00002 AUGUSTUS CDS 249572 250669 0.8 - 0 transcript_id "g31.t1"; gene_id "g31"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 250667 250669 . - 0 transcript_id "g31.t1"; gene_id "g31"; C.avellana_Jefferson_00002 AUGUSTUS tss 250758 250758 . - . transcript_id "g31.t1"; gene_id "g31"; # protein sequence = [MDGSCIDESTTSTDSISISPATLSPLPATKSPESLCRVGSVITSIILDSESGIEAESRGKLPSSKYKGVVPQPNGRWG # AQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLATTEEDDVETAFLNSHSKAEIVDMLRKHTYNDELEQSKRNRGLDSNGKRSKADG # SAAASFGSAGFLKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSASTSKGVLLNFEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKA # GDIVSFQRSTGPDKQLYIDWKVRTESVVVGLSNPVFPVQQVQMVRLFGVNILQIPVGGVVESIGGCHGKRMREMELLTLECSKKPRMVGAL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g31 ### # start gene g32 C.avellana_Jefferson_00002 AUGUSTUS gene 270124 270538 0.05 - . g32 C.avellana_Jefferson_00002 AUGUSTUS transcript 270124 270538 0.05 - . g32.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 270124 270124 . - . transcript_id "g32.t1"; gene_id "g32"; C.avellana_Jefferson_00002 AUGUSTUS exon 270124 270538 . - . transcript_id "g32.t1"; gene_id "g32"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 270269 270271 . - 0 transcript_id "g32.t1"; gene_id "g32"; C.avellana_Jefferson_00002 AUGUSTUS CDS 270269 270466 0.24 - 0 transcript_id "g32.t1"; gene_id "g32"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 270464 270466 . - 0 transcript_id "g32.t1"; gene_id "g32"; C.avellana_Jefferson_00002 AUGUSTUS tss 270538 270538 . - . transcript_id "g32.t1"; gene_id "g32"; # protein sequence = [MQDTNMAANXXXXXXXXXXXXXXXXWTARHGRRWLTGATGLEAGAVYWRWEHWERRSRLESGGRE] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g32 ### # start gene g33 C.avellana_Jefferson_00002 AUGUSTUS gene 272093 272658 0.69 - . g33 C.avellana_Jefferson_00002 AUGUSTUS transcript 272093 272658 0.69 - . g33.t1 C.avellana_Jefferson_00002 AUGUSTUS tts 272093 272093 . - . transcript_id "g33.t1"; gene_id "g33"; C.avellana_Jefferson_00002 AUGUSTUS exon 272093 272658 . - . transcript_id "g33.t1"; gene_id "g33"; C.avellana_Jefferson_00002 AUGUSTUS stop_codon 272153 272155 . - 0 transcript_id "g33.t1"; gene_id "g33"; C.avellana_Jefferson_00002 AUGUSTUS CDS 272153 272551 0.96 - 0 transcript_id "g33.t1"; gene_id "g33"; C.avellana_Jefferson_00002 AUGUSTUS start_codon 272549 272551 . - 0 transcript_id "g33.t1"; gene_id "g33"; C.avellana_Jefferson_00002 AUGUSTUS tss 272658 272658 . - . transcript_id "g33.t1"; gene_id "g33"; # protein sequence = [MEFSPFVFLGLEFSLIHSASSEAISITLCDLSFILPKSQLLPLQCLCAASSALPHRLFLSDLFWVSVLAPLKHDLSSS # VRSNHQRVSPLSSSTSLLPVAAFYASAWQPCAGEWISCVMRVCNFAITSKYQLS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g33 ### # # ----- prediction on sequence number 3 (length = 252020, name = C.avellana_Jefferson_00003) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 3 on both strands # start gene g34 C.avellana_Jefferson_00003 AUGUSTUS gene 3586 5446 0.03 + . g34 C.avellana_Jefferson_00003 AUGUSTUS transcript 3586 5446 0.03 + . g34.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 3586 3586 . + . transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS exon 3586 3773 . + . transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 3771 3773 . + 0 transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS intron 3774 4112 0.1 + . transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS intron 4160 4279 0.78 + . transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS intron 4383 4469 0.96 + . transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS CDS 3771 3773 0.1 + 0 transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS CDS 4113 4159 0.75 + 0 transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS exon 4113 4159 . + . transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS CDS 4280 4382 0.84 + 1 transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS exon 4280 4382 . + . transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS CDS 4470 5246 0.9 + 0 transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS exon 4470 5446 . + . transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 5244 5246 . + 0 transcript_id "g34.t1"; gene_id "g34"; C.avellana_Jefferson_00003 AUGUSTUS tts 5446 5446 . + . transcript_id "g34.t1"; gene_id "g34"; # protein sequence = [MVEELYSLDLDSLNNLRPVYGLIFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILMNCPDIDVGPEL # SKLKEFTRNFPPELKGLAINNSEAIRTAHNSFARPEPFVQEEQKAAGKDDDVYHFISYLPVDGILYELDGLKEGPISLGQYSGGQGDMDWLSMVQPVI # QERIERYCQSEIRFNLMAVIKNRKEIYTAELKELQKRRERILQQLAALQPERPVGNGNVEVLNKSLSEVNAGIEAATEKILVEEEKFKKWRTENIRRK # HNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSSR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g34 ### # start gene g35 C.avellana_Jefferson_00003 AUGUSTUS gene 6106 11912 0.09 + . g35 C.avellana_Jefferson_00003 AUGUSTUS transcript 6106 11912 0.09 + . g35.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 6106 6106 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 6106 6667 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 6264 6266 . + 0 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS intron 6668 8199 0.39 + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS intron 8404 8550 0.96 + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS intron 8849 8942 0.91 + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS intron 9120 9402 0.6 + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS intron 9457 9689 0.61 + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS intron 9839 10127 0.43 + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS intron 10287 10836 0.93 + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS intron 10901 10976 1 + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS intron 11148 11259 0.98 + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS intron 11392 11716 0.99 + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 6264 6667 0.57 + 0 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 8200 8403 0.69 + 1 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 8200 8403 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 8551 8848 0.88 + 1 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 8551 8848 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 8943 9119 0.92 + 0 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 8943 9119 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 9403 9456 0.63 + 0 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 9403 9456 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 9690 9838 0.91 + 0 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 9690 9838 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 10128 10286 0.43 + 1 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 10128 10286 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 10837 10900 0.97 + 1 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 10837 10900 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 10977 11147 0.98 + 0 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 10977 11147 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 11260 11391 0.99 + 0 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 11260 11391 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS CDS 11717 11758 0.99 + 0 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS exon 11717 11912 . + . transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 11756 11758 . + 0 transcript_id "g35.t1"; gene_id "g35"; C.avellana_Jefferson_00003 AUGUSTUS tts 11912 11912 . + . transcript_id "g35.t1"; gene_id "g35"; # protein sequence = [MATSLSATTPRLTFASPTFQTLYSRXXXXXXXXXXXXXXXXXXDPKILSSLSRHHRGLLSQCHRHRHCRGFTTRAESE # NGSEPARHYDFDLFTIGAGSGGVRASRFAANFGASVAVCELPFSTISSDTTGGFGGTCVLRGCVPKKLLVYASNYSHEFEESHGFGWKYDAEPKHDWS # TLMANKNAELQRLTGIYKNILKNAGVSQNKFPQIVDPHTVDVDGKLYSARHILVSVGGRPFIPEIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIAVE # FAGIFNGLTSDVHVFIRQKKVLRGFDEEIRDFVAEQMSLRGIEIHTEESPQAIIKSADGSLSLKTSKGTVEGFSHVMFATGRRPNTKNLGLETVGVKM # TKNGAIEVDEYSRTSVPSIWAVGDVTDRLNLTPVALMEGGALAKTLFQNEPTKPDYRSLFDGAGSRRREACQSMTETEISGLGSIIGRYGVECSSPGS # DVQCLPPGVSDRAVPSAVFSQPPIGQVGLTEEQAIQEYGDVDIFTANFKPLKATISGLPDRVLMKLLVCAKTNKVLGLHMCGQDAPEIVQGFAVAMKA # GLTKADFDATVGVHPTAAEEFVTMRTPTRKIRKTSEEKIDSGVKAPAGV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/11 # CDS introns: 0/10 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g35 ### # start gene g36 C.avellana_Jefferson_00003 AUGUSTUS gene 13483 18551 0.29 - . g36 C.avellana_Jefferson_00003 AUGUSTUS transcript 13483 18551 0.29 - . g36.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 13483 13483 . - . transcript_id "g36.t1"; gene_id "g36"; C.avellana_Jefferson_00003 AUGUSTUS exon 13483 16267 . - . transcript_id "g36.t1"; gene_id "g36"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 14460 14462 . - 0 transcript_id "g36.t1"; gene_id "g36"; C.avellana_Jefferson_00003 AUGUSTUS CDS 14460 16244 1 - 0 transcript_id "g36.t1"; gene_id "g36"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 16242 16244 . - 0 transcript_id "g36.t1"; gene_id "g36"; C.avellana_Jefferson_00003 AUGUSTUS exon 18128 18551 . - . transcript_id "g36.t1"; gene_id "g36"; C.avellana_Jefferson_00003 AUGUSTUS tss 18551 18551 . - . transcript_id "g36.t1"; gene_id "g36"; # protein sequence = [MSLISQKILPKSRANKTKREDADEPSFLQGNEDTENEDXXXXNKTKREDADEPSFLQGSEDTEKGDLDVLRANKRKKE # RKDEDEKLVIEQEREMKKLENSLFGSLYSPVEFGKEDGEDSQDRAEKGSALFFTDRSANSMLSVYEEDGEFSERSNDEEETKQRKPVWADEEEEKTNI # NIAQVNRLRKLRKEEDESLISGSEYVSRLRAQHAKLNPRTEWAQLDSRARHDSSFDDESSDEENGAVLARGYKDVEAVEDILRTNEDLVVKSSSKLLP # GLLEYSRLVDGNVEDPSKGPINSVQFHRNAQLLLTAGLDRRLRFYQIDGKRNTKIQSIFLDDCPVRKASFVPDGSQVIIAGRRKFFYSFDLVKATVDK # IGPLVGREEKSLEHFEVSPDSSTIAFVGNEGYILLVSTKTKELIGTLKMNGTVRSLAFADDGQQLLSSGGDGQVYHWDLRTRACFHKGVDEGCMNGTA # LCTSPNGKLFAAGSDSGIVNIYNREEFLGGKRKPIKTIENLTTKVDFLKFNNDAQILAISSNMKKNSLKLIHVPSFTVFSNWPPLNMSLHYPRCLDFS # PGGGFMAMGNAGGKVLLYKLHHYLHA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g36 ### # start gene g37 C.avellana_Jefferson_00003 AUGUSTUS gene 20079 22631 0.19 - . g37 C.avellana_Jefferson_00003 AUGUSTUS transcript 20079 22631 0.19 - . g37.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 20079 20079 . - . transcript_id "g37.t1"; gene_id "g37"; C.avellana_Jefferson_00003 AUGUSTUS exon 20079 20464 . - . transcript_id "g37.t1"; gene_id "g37"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 20224 20226 . - 0 transcript_id "g37.t1"; gene_id "g37"; C.avellana_Jefferson_00003 AUGUSTUS intron 20465 21259 1 - . transcript_id "g37.t1"; gene_id "g37"; C.avellana_Jefferson_00003 AUGUSTUS CDS 20224 20464 1 - 1 transcript_id "g37.t1"; gene_id "g37"; C.avellana_Jefferson_00003 AUGUSTUS CDS 21260 22524 0.9 - 0 transcript_id "g37.t1"; gene_id "g37"; C.avellana_Jefferson_00003 AUGUSTUS exon 21260 22631 . - . transcript_id "g37.t1"; gene_id "g37"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 22522 22524 . - 0 transcript_id "g37.t1"; gene_id "g37"; C.avellana_Jefferson_00003 AUGUSTUS tss 22631 22631 . - . transcript_id "g37.t1"; gene_id "g37"; # protein sequence = [MAAISLSHTLLPFPTPRHTHLQSITHQLGVPKVATKTTPTICKVLSKTSDSLSAVITDLVEEDEEAYTSTSQLPERQL # ADAWREIHGQDDWVGLLDPMDPLLRSELIRYGDMAQACYDAFDFDPFSKYCGSCRFMRHDFFDSLGMTSHQGYDVSRYIFATSNINLPNFFKKSRWPK # VWSKNANWIGYVAVSNDETTRLLGRRDITIAWRGTVTRLEWIADLMDFLKPISSNKIPCPDPTVKAESGFLDLYTDKDEACRFCKFSAREQILSEVKR # LLDVYAGEEVSITFTGHSLGAALAVLSAYDIVETGLNVLPDGSAVPVCVFSFAGPRVGNVRFKERLETLGLKVLRVVNIHDVVPKSPGLFFNEQVPPM # VMKWAEGLPWSYSHVGVELGLDHKNSPFLKQNADPVSAHNLEAHLHLLDGYHGKGHRFVLASGRDLALVNKACDFLKDHYLVPPYWRQDENKGMVRSR # DGRWVQPERPKLDDHSSDVHHHLNQLGLASL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g37 ### # start gene g38 C.avellana_Jefferson_00003 AUGUSTUS gene 29476 35789 0.15 + . g38 C.avellana_Jefferson_00003 AUGUSTUS transcript 29476 35789 0.15 + . g38.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 29476 29476 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 29476 29958 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 29577 29579 . + 0 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 29959 30163 0.91 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 30306 30728 1 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 30831 30912 0.99 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 31058 31153 0.98 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 31339 31690 0.98 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 31796 32318 0.97 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 32417 32528 1 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 32750 32834 1 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 32902 33007 0.99 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 33094 35065 0.94 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS intron 35162 35485 0.86 + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 29577 29958 0.97 + 0 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 30164 30305 0.91 + 2 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 30164 30305 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 30729 30830 0.99 + 1 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 30729 30830 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 30913 31057 0.98 + 1 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 30913 31057 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 31154 31338 0.96 + 0 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 31154 31338 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 31691 31795 1 + 1 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 31691 31795 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 32319 32416 1 + 1 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 32319 32416 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 32529 32749 1 + 2 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 32529 32749 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 32835 32901 0.99 + 0 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 32835 32901 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 33008 33093 1 + 2 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 33008 33093 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 35066 35161 0.88 + 0 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 35066 35161 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS CDS 35486 35551 0.85 + 0 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS exon 35486 35789 . + . transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 35549 35551 . + 0 transcript_id "g38.t1"; gene_id "g38"; C.avellana_Jefferson_00003 AUGUSTUS tts 35789 35789 . + . transcript_id "g38.t1"; gene_id "g38"; # protein sequence = [MQDRRHQNQSHLSPRRLTTPGGAAAIIVADTKRGKKRGSYTCGRCGLPKKGHSCYVGITTDTNSPISSTPTHAPDLSV # AVSATRPPPSRHFRRALSFDDDVSDVHGGFPEDEDDLDVGDTLADPESGGWRETAKRLWKAAEELRLRVPARAQVGLVGSVLQKCPGIVRLSLRMESD # VDATMLACIAFSCPNLEFMEISKSVTAINRITGDELGRFVADKRCLKSLKMEGCSNLGGFVLCSSSLSTLWLSDLYSLSKMVFNCPNLNEISLEFSCQ # ENDSTDLTTVVDGLGRNCPRLQNIHIASVRLSHSVVLALTAAQLRWLRMLSLVLGSEITDASVAAIASSYPNLELLDLSGSSISDSGIGMICNVFPET # LSRLLLALCPNITSSGIQFATAQLPLLELMDCGMTICDPNSQNPIPDESSDSALKHISNTKLHLIHQKLIIKHNRLKKLSLWGCSGLDALYLNCPALN # DLNLNSCKNLHPERLLLQCPTLESVHASGCQELLIGTIERQVSDDSAMENLLPCKRLADGSKRVRVPHFLSAQSYDDDKKQRRVERRQCNVLLS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/12 # CDS introns: 0/11 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g38 ### # start gene g39 C.avellana_Jefferson_00003 AUGUSTUS gene 37536 40468 0.09 + . g39 C.avellana_Jefferson_00003 AUGUSTUS transcript 37536 40468 0.09 + . g39.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 37536 37536 . + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS exon 37536 37671 . + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 37629 37631 . + 0 transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS intron 37672 37964 0.58 + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS intron 38225 38327 0.87 + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS intron 38372 38496 0.89 + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS intron 38575 39027 0.98 + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS intron 39221 40105 0.81 + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS CDS 37629 37671 0.62 + 0 transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS CDS 37965 38224 0.79 + 2 transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS exon 37965 38224 . + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS CDS 38328 38371 0.9 + 0 transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS exon 38328 38371 . + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS CDS 38497 38574 0.91 + 1 transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS exon 38497 38574 . + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS CDS 39028 39220 1 + 1 transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS exon 39028 39220 . + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS CDS 40106 40183 0.83 + 0 transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS exon 40106 40468 . + . transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 40181 40183 . + 0 transcript_id "g39.t1"; gene_id "g39"; C.avellana_Jefferson_00003 AUGUSTUS tts 40468 40468 . + . transcript_id "g39.t1"; gene_id "g39"; # protein sequence = [MEVCLSPTTTRGYSESLLLQKRVKLPLRNWCLASISRTGAVAPTLFAQTGIPNXXXXLLLQKRVKLPLRNWCLVSISR # TRAVAPTLFAQTGIPNGKPNNVKVLCSQVREIPVVESRCIDEIYDTLAERLLPTAAVASNPKLKYIVGLAGPPGSGKSTLASEVARRVNKLWLQKASS # LDSQVKPPDIATVLPMDGFHLYRSQLDKMEGSVYVPSFDHGVGDPVEDDIFVSFQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g39 ### # start gene g40 C.avellana_Jefferson_00003 AUGUSTUS gene 46223 46781 0.26 - . g40 C.avellana_Jefferson_00003 AUGUSTUS transcript 46223 46781 0.26 - . g40.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 46223 46223 . - . transcript_id "g40.t1"; gene_id "g40"; C.avellana_Jefferson_00003 AUGUSTUS exon 46223 46781 . - . transcript_id "g40.t1"; gene_id "g40"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 46429 46431 . - 0 transcript_id "g40.t1"; gene_id "g40"; C.avellana_Jefferson_00003 AUGUSTUS CDS 46429 46689 0.76 - 0 transcript_id "g40.t1"; gene_id "g40"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 46687 46689 . - 0 transcript_id "g40.t1"; gene_id "g40"; C.avellana_Jefferson_00003 AUGUSTUS tss 46781 46781 . - . transcript_id "g40.t1"; gene_id "g40"; # protein sequence = [MEVGTKKEKMGFEETELRLGLPGNGAXXXXXXXHEAAEVARKRGFSETQTSAVDLKLNLSSKLEQKPNTNHLLTAAAA # DPAKPPAK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g40 ### # start gene g41 C.avellana_Jefferson_00003 AUGUSTUS gene 56644 57181 0.05 - . g41 C.avellana_Jefferson_00003 AUGUSTUS transcript 56644 57181 0.05 - . g41.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 56644 56644 . - . transcript_id "g41.t1"; gene_id "g41"; C.avellana_Jefferson_00003 AUGUSTUS exon 56644 57181 . - . transcript_id "g41.t1"; gene_id "g41"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 56858 56860 . - 0 transcript_id "g41.t1"; gene_id "g41"; C.avellana_Jefferson_00003 AUGUSTUS CDS 56858 57094 1 - 0 transcript_id "g41.t1"; gene_id "g41"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 57092 57094 . - 0 transcript_id "g41.t1"; gene_id "g41"; C.avellana_Jefferson_00003 AUGUSTUS tss 57181 57181 . - . transcript_id "g41.t1"; gene_id "g41"; # protein sequence = [MVAGETRDTVELGVQWEGDKGGTSTADGIEEWTGNGRLRWDLRTGSRSVGSRGWKGTAHVTGRGPTWMSLIGNARHVG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g41 ### # start gene g42 C.avellana_Jefferson_00003 AUGUSTUS gene 57326 58588 0.26 + . g42 C.avellana_Jefferson_00003 AUGUSTUS transcript 57326 58588 0.26 + . g42.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 57326 57326 . + . transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS exon 57326 57698 . + . transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 57475 57477 . + 0 transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS intron 57699 58100 1 + . transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS intron 58307 58431 1 + . transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS CDS 57475 57698 1 + 0 transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS CDS 58101 58306 1 + 1 transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS exon 58101 58306 . + . transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS CDS 58432 58535 0.83 + 2 transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS exon 58432 58588 . + . transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 58533 58535 . + 0 transcript_id "g42.t1"; gene_id "g42"; C.avellana_Jefferson_00003 AUGUSTUS tts 58588 58588 . + . transcript_id "g42.t1"; gene_id "g42"; # protein sequence = [MERAVNYGGDDLNLEATELRLGLPGSDGLEKQSSPGVRTNKRASPDVAEDSRSKSNNSIVSDAGNGGRDTAPPPKAQV # VGWPPIRSFRRNSFQAKKSDEADGAGMYVKVSMDGAPYLRKVDLKLYKSYPELLKALEHMFKFTIGEYSEREGYDGSEYVPTYEDKEGDWMLVGDVPW # E] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g42 ### # start gene g43 C.avellana_Jefferson_00003 AUGUSTUS gene 62526 64154 0.14 + . g43 C.avellana_Jefferson_00003 AUGUSTUS transcript 62526 64154 0.14 + . g43.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 62526 62526 . + . transcript_id "g43.t1"; gene_id "g43"; C.avellana_Jefferson_00003 AUGUSTUS exon 62526 63057 . + . transcript_id "g43.t1"; gene_id "g43"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 62584 62586 . + 0 transcript_id "g43.t1"; gene_id "g43"; C.avellana_Jefferson_00003 AUGUSTUS intron 63058 63548 1 + . transcript_id "g43.t1"; gene_id "g43"; C.avellana_Jefferson_00003 AUGUSTUS CDS 62584 63057 0.99 + 0 transcript_id "g43.t1"; gene_id "g43"; C.avellana_Jefferson_00003 AUGUSTUS CDS 63549 63785 0.76 + 0 transcript_id "g43.t1"; gene_id "g43"; C.avellana_Jefferson_00003 AUGUSTUS exon 63549 64154 . + . transcript_id "g43.t1"; gene_id "g43"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 63783 63785 . + 0 transcript_id "g43.t1"; gene_id "g43"; C.avellana_Jefferson_00003 AUGUSTUS tts 64154 64154 . + . transcript_id "g43.t1"; gene_id "g43"; # protein sequence = [MAGRGGVVNGVWDGIVPPQCQPNHSILRLSANLTWVLAQEPLHADIDANKTNGVGPGMAFANAVLSKDPTFGVIGLVP # CAIGGTSISEWGRGTSLYKSLLRRAQAALQDGGTIQALLWYQGEADTVTKEAADSYQAKLESFFSDVREDLKSPMLPIIQVALASGSGPFVDIVREAQ # LGIDLLDLRTVDAKGLPLEPDGLHITTQAQVQLGQMLADTFXXXXLNRMVCTSTRKPRFN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g43 ### # start gene g44 C.avellana_Jefferson_00003 AUGUSTUS gene 66915 69531 0.04 - . g44 C.avellana_Jefferson_00003 AUGUSTUS transcript 66915 69531 0.04 - . g44.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 66915 66915 . - . transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS exon 66915 67383 . - . transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 67195 67197 . - 0 transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS intron 67384 67959 0.51 - . transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS intron 68067 68367 0.23 - . transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS intron 68475 69110 0.98 - . transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS intron 69278 69418 0.51 - . transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS CDS 67195 67383 0.48 - 0 transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS CDS 67960 68066 0.55 - 2 transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS exon 67960 68066 . - . transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS CDS 68368 68474 0.32 - 1 transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS exon 68368 68474 . - . transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS CDS 69111 69277 0.51 - 0 transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS exon 69111 69277 . - . transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS CDS 69419 69472 0.51 - 0 transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS exon 69419 69531 . - . transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 69470 69472 . - 0 transcript_id "g44.t1"; gene_id "g44"; C.avellana_Jefferson_00003 AUGUSTUS tss 69531 69531 . - . transcript_id "g44.t1"; gene_id "g44"; # protein sequence = [MALNHTPATTTLRNFLCTVAYTRPAEIPWRKEHCNTVQLIGIVGTPVEMKHLPSGKALAWTRLAVKKSSTLTSWINLT # FWEELAHIAFQHVEKGNQIYITGRLVSDTVESKKFGNNAASNMGSIEESWQAFFANPVEWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPPWVKSQ # LAILDTRMGSLYSQDAGLDANLISADKFISF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g44 ### # start gene g45 C.avellana_Jefferson_00003 AUGUSTUS gene 70783 75901 0.05 - . g45 C.avellana_Jefferson_00003 AUGUSTUS transcript 70783 75901 0.05 - . g45.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 70783 70783 . - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS exon 70783 71143 . - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 70913 70915 . - 0 transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS intron 71144 71239 0.93 - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS intron 71318 72374 0.9 - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS intron 72441 73603 0.9 - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS intron 73670 73835 0.89 - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS intron 73956 75544 0.61 - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS CDS 70913 71143 1 - 0 transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS CDS 71240 71317 0.92 - 0 transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS exon 71240 71317 . - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS CDS 72375 72440 0.89 - 0 transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS exon 72375 72440 . - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS CDS 73604 73669 0.87 - 0 transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS exon 73604 73669 . - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS CDS 73836 73955 0.87 - 0 transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS exon 73836 73955 . - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS CDS 75545 75868 0.93 - 0 transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS exon 75545 75901 . - . transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 75866 75868 . - 0 transcript_id "g45.t1"; gene_id "g45"; C.avellana_Jefferson_00003 AUGUSTUS tss 75901 75901 . - . transcript_id "g45.t1"; gene_id "g45"; # protein sequence = [MANNHPSSEATSNDDFFDQILGIPSFASADTGLPGGHDTGLPSGASPHMMLQLGSGDASGGFHGQVFPLGLSLEQGKG # GFLKPEEASGSGGKRFRDDLVDGRAASMKNVFHGQPMPTTVAAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAM # LDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSDGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAI # YQTQPPDTSSIVKPESNPPS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g45 ### # start gene g46 C.avellana_Jefferson_00003 AUGUSTUS gene 79116 85515 0.21 + . g46 C.avellana_Jefferson_00003 AUGUSTUS transcript 79116 85515 0.21 + . g46.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 79116 79116 . + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS exon 79116 79370 . + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 79179 79181 . + 0 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS intron 79371 80380 1 + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS intron 80528 80595 0.98 + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS intron 80662 81146 0.98 + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS intron 81256 82631 0.98 + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS intron 82709 83083 0.9 + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS intron 83162 84422 0.88 + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS intron 84501 85094 0.98 + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS intron 85155 85250 1 + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS CDS 79179 79370 0.9 + 0 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS CDS 80381 80527 0.98 + 0 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS exon 80381 80527 . + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS CDS 80596 80661 0.98 + 0 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS exon 80596 80661 . + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS CDS 81147 81255 0.98 + 0 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS exon 81147 81255 . + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS CDS 82632 82708 0.98 + 2 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS exon 82632 82708 . + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS CDS 83084 83161 0.88 + 0 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS exon 83084 83161 . + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS CDS 84423 84500 0.98 + 0 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS exon 84423 84500 . + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS CDS 85095 85154 1 + 0 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS exon 85095 85154 . + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS CDS 85251 85385 1 + 0 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS exon 85251 85515 . + . transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 85383 85385 . + 0 transcript_id "g46.t1"; gene_id "g46"; C.avellana_Jefferson_00003 AUGUSTUS tts 85515 85515 . + . transcript_id "g46.t1"; gene_id "g46"; # protein sequence = [MAIAFKSPTPTFLPKKNTEAHSFLRFPSQRLAVPVRRFTPMAALSTAPTVGLSETFTRLKNQGKVALIPYITAGDPDL # STTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQLSCPIALFSYYNPILKRGVEKFMITIKDVGVQGLVVP # DVPLEETEILRKEAKKNGIELVLLTTPTTPTDRMRAIVEAAEGFVYLVSSVGVTGARASVSNRVQTLLQEIKEATAKPVAVGFGISNPEHVKQVAGWG # ADGVIVGSAMVKVLAEAKSPEEGLKELETFTKSLKAALD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g46 ### # start gene g47 C.avellana_Jefferson_00003 AUGUSTUS gene 88736 96105 0.03 + . g47 C.avellana_Jefferson_00003 AUGUSTUS transcript 88736 96105 0.03 + . g47.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 88736 88736 . + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS exon 88736 89155 . + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 88859 88861 . + 0 transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS intron 89156 89346 0.66 + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS intron 89444 91131 1 + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS intron 91343 93418 0.43 + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS intron 93495 93583 0.94 + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS intron 93710 95479 0.73 + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS CDS 88859 89155 0.27 + 0 transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS CDS 89347 89443 1 + 0 transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS exon 89347 89443 . + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS CDS 91132 91342 0.44 + 2 transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS exon 91132 91342 . + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS CDS 93419 93494 0.43 + 1 transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS exon 93419 93494 . + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS CDS 93584 93709 0.94 + 0 transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS exon 93584 93709 . + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS CDS 95480 95920 0.93 + 0 transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS exon 95480 96105 . + . transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 95918 95920 . + 0 transcript_id "g47.t1"; gene_id "g47"; C.avellana_Jefferson_00003 AUGUSTUS tts 96105 96105 . + . transcript_id "g47.t1"; gene_id "g47"; # protein sequence = [MGDPLWSSSGSTTTAMNRSDSEWFLQQYIEENFPPATAISVPPSTIADSSATTDEVEVLDNDKHNYYRQQRLNHPYPT # APADPEEYRALLKSKLHMACAGSCSSTEENGNVAESQSQGSKPSQLGSQAQDKGTGHNFSMAQSQADGGPLGIPALPTLQVKSGVQVRQSTSGSSRED # SDDDDLEGDMETTDNMGPSDEKRARRMRSNRESARRSRRRKQAHMNELETQVGHLRVEHSTLLKRLTEVNQKYEGSGVDNRILKADIETLRAKVKMAE # ETVKRVTGLPAMNLAMATVPSMGMPLVSSPMNASTNAAALPIPPKSNHFFRQQVPTVVNAIPHHQSQRLDDSFPSNPPIPLIGNPQKDIGGNRVAEMS # SMQCRARVQQVQKQISPDATSHVTMPGWDPELSHTAPNNNKQN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g47 ### # start gene g48 C.avellana_Jefferson_00003 AUGUSTUS gene 104608 106921 0.16 - . g48 C.avellana_Jefferson_00003 AUGUSTUS transcript 104608 106921 0.16 - . g48.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 104608 104608 . - . transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS exon 104608 105576 . - . transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 105501 105503 . - 0 transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS intron 105577 106061 0.94 - . transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS intron 106143 106302 0.98 - . transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS intron 106368 106528 0.99 - . transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS CDS 105501 105576 0.94 - 1 transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS CDS 106062 106142 0.98 - 1 transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS exon 106062 106142 . - . transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS CDS 106303 106367 0.99 - 0 transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS exon 106303 106367 . - . transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS CDS 106529 106828 0.99 - 0 transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS exon 106529 106921 . - . transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 106826 106828 . - 0 transcript_id "g48.t1"; gene_id "g48"; C.avellana_Jefferson_00003 AUGUSTUS tss 106921 106921 . - . transcript_id "g48.t1"; gene_id "g48"; # protein sequence = [MRTFTAARLDSTTTGGGSGGSARITKLKTENLNPSTVKIENSECGKDGGAQGAGTVGPGAAAAGGSMAGIVVKEDATK # IFTENIQTSGAYSAREESLKREEEAGRLKFVCHSNDDIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNLVVGGITYRPYAR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g48 ### # start gene g49 C.avellana_Jefferson_00003 AUGUSTUS gene 108696 110136 0.08 + . g49 C.avellana_Jefferson_00003 AUGUSTUS transcript 108696 110136 0.08 + . g49.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 108696 108696 . + . transcript_id "g49.t1"; gene_id "g49"; C.avellana_Jefferson_00003 AUGUSTUS exon 108696 110136 . + . transcript_id "g49.t1"; gene_id "g49"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 108717 108719 . + 0 transcript_id "g49.t1"; gene_id "g49"; C.avellana_Jefferson_00003 AUGUSTUS CDS 108717 110036 0.94 + 0 transcript_id "g49.t1"; gene_id "g49"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 110034 110036 . + 0 transcript_id "g49.t1"; gene_id "g49"; C.avellana_Jefferson_00003 AUGUSTUS tts 110136 110136 . + . transcript_id "g49.t1"; gene_id "g49"; # protein sequence = [MIWRVGNGRSVHIWRDRWIPCPTTYSIQTPCNLLGAAARVSDLINTEMGGWNVTLIRNIFQAHEADVICNLPLSRYSL # PDKLIWRATTTGEFTVRSAYYLDKERMARDKGEGSIKSGNTSFWKSLWSLKVPNATKVFLWRACSNILPTKDNLFKKGVVQDDLCLICGLDRETVQHV # LWECSSAVDVWGVCGRMIQKSSVVGLSFMSIMEGMVLRCGWEAMALFAVIARKIWHRRNGVLYGEDFIHPNNIIIEAEENLRLFLAVGVGVQINKIPS # FVKWQVPPFGKYKVNWDIALGIDRNRMGIGVLVRDHHGLVQAALCRTLFVVPVPVSAEAMGALVAAEFSKDLGLQDIILEGDCLQVVNSIKSPDPSWS # CYGQTVGDVRLVLNTRRSWMIYHVKREANACAHGLAKEAVRVISDFVWIEESPPCISDLVTLELSAL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g49 ### # start gene g50 C.avellana_Jefferson_00003 AUGUSTUS gene 113270 120211 0.03 - . g50 C.avellana_Jefferson_00003 AUGUSTUS transcript 113270 120211 0.03 - . g50.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 113270 113270 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 113270 113939 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 113568 113570 . - 0 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS intron 113940 114571 0.94 - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS intron 114740 116614 0.98 - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS intron 116681 116772 0.99 - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS intron 116793 116898 1 - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS intron 116959 117181 0.75 - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS intron 117243 118607 0.58 - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS intron 118666 118746 1 - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS intron 118865 118951 0.99 - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS intron 118991 119069 0.95 - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS intron 119140 119942 0.99 - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 113568 113939 0.93 - 0 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 114572 114739 1 - 0 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 114572 114739 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 116615 116680 0.99 - 0 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 116615 116680 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 116773 116792 1 - 2 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 116773 116792 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 116899 116958 0.78 - 2 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 116899 116958 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 117182 117242 0.97 - 0 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 117182 117242 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 118608 118665 1 - 1 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 118608 118665 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 118747 118864 1 - 2 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 118747 118864 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 118952 118990 0.99 - 2 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 118952 118990 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 119070 119139 0.95 - 0 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 119070 119139 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS CDS 119943 120074 0.87 - 0 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS exon 119943 120211 . - . transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 120072 120074 . - 0 transcript_id "g50.t1"; gene_id "g50"; C.avellana_Jefferson_00003 AUGUSTUS tss 120211 120211 . - . transcript_id "g50.t1"; gene_id "g50"; # protein sequence = [MQCICFGTYRFPIVEPDPGHTKLRLSREGLDVIERITTPIAAVAVIGPYRSGKSFLLNQLLSLSCFEGFGVGHMRDTK # TKGIWVWGTPVELDIDGVRNSVFYLDTEGFESVGKSNVYDDRIFALANVMSSVLIYNLPETGQDVAFEPSKLLWLIQRDFLLGKSVQEMVNEALRHIP # NDDGDKNIELVNQIRDSLAIMGDNSTAFSLPQPHLQRTKLCDMKDAELDPIYVKKREQLKELVAGIIRPKIVQGKTLNGKEFVSFLEQILEALNKGEI # PSTGSLVEVFNKGILERCMKLYSENMAKLHLPHTEQDLQDAHERSREVAMQVFDEQHFGRHHANKSVMQLDEEIQKVWIGPFSIMNVLRDPFTLLDCS # VEWMKDVYILASCET] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/11 # CDS introns: 0/10 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g50 ### # start gene g51 C.avellana_Jefferson_00003 AUGUSTUS gene 135116 137319 0.07 + . g51 C.avellana_Jefferson_00003 AUGUSTUS transcript 135116 137319 0.07 + . g51.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 135116 135116 . + . transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS exon 135116 136089 . + . transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 135496 135498 . + 0 transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS intron 136090 136330 1 + . transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS intron 136891 137033 0.93 + . transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS CDS 135496 136089 0.57 + 0 transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS CDS 136331 136890 0.95 + 0 transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS exon 136331 136890 . + . transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS CDS 137034 137295 0.91 + 1 transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS exon 137034 137319 . + . transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 137293 137295 . + 0 transcript_id "g51.t1"; gene_id "g51"; C.avellana_Jefferson_00003 AUGUSTUS tts 137319 137319 . + . transcript_id "g51.t1"; gene_id "g51"; # protein sequence = [MFSFNMILDELPERINQLNLTFIAPLLCLALIFVLSSIFRAKRSRKVFLLDFACYKPPATQMCGKEKFLDRFRIYGNS # NENSIDFMRKCLVRSGLGEKTYMPSNLMRDPPNLSLEETRKEVESVMFGAVDALLEKTGVNPKDIGIVIATCTILNVEPSLADMVVNRYKLGDHVLVY # NFASMGCSAGLRAIGLAQGLLQAHPNTYALLVSPENTQQMIYRGNGKSKLLMNFPLRVGGAAVLLSNKPSDQCKAKFQLLHSVHTHTASSDSSYQSIY # ESEDDEGFGGVTVSRELLSVAIGAVEANIRALGPLVLPLSEKIRYLTNYVIRYFNVAEVKPYTPNFKKAIEHVFPHVGTKPVLDEFEKNMGFNASDVE # ASRMNLXXXXWRRFGNTCSASVWYALSYGEAKGKIKRGDRLWQIAFGSGFKCSSAVWRALRNVDDDEERNPWIDEIHEFPVDLRNMKSFAEAFDPAKK # M] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g51 ### # start gene g52 C.avellana_Jefferson_00003 AUGUSTUS gene 145591 147671 0.13 - . g52 C.avellana_Jefferson_00003 AUGUSTUS transcript 145591 147671 0.13 - . g52.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 145591 145591 . - . transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS exon 145591 146408 . - . transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 145858 145860 . - 0 transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS intron 146409 146782 0.77 - . transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS intron 146976 147048 1 - . transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS CDS 145858 146408 0.93 - 2 transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS CDS 146783 146975 0.77 - 0 transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS exon 146783 146975 . - . transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS CDS 147049 147453 0.87 - 0 transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS exon 147049 147671 . - . transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 147451 147453 . - 0 transcript_id "g52.t1"; gene_id "g52"; C.avellana_Jefferson_00003 AUGUSTUS tss 147671 147671 . - . transcript_id "g52.t1"; gene_id "g52"; # protein sequence = [MPFPMKIQPIDSHTPEDCKPVKPVVKSRFKRLFERQFLNVLRNSAAEKVGVEEPHFYKDGCNGSSVEFEPSSVCLAKM # VQSFIEENNEKQFGASRCGRNRCNCFNRNSTDSSEDDFDSHNDSNYSCCTEACEILKGLVPCASVCERNLLADTAKIVDKNKICKRKDEFCRKVVTDG # LSALGYDASICKSHWEKSPSYPAGEYEYIDVIMEGDRFLIDIDFRSEFEIVRSTKAYKAILQSLPYIFVGKADRLQRIITIVAEAAKQSLKKKDMHIP # PWRKAEYVKAKWLSPHPRSTPTSRTAANHEKPLMIRTNRELAPSRGEGDSADETELGEPVFALSESSGEEDKATVGKEWKPPEVKPKGALVGVRIVTG # LASVIEDDWP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g52 ### # start gene g53 C.avellana_Jefferson_00003 AUGUSTUS gene 154926 156857 0.04 + . g53 C.avellana_Jefferson_00003 AUGUSTUS transcript 154926 156857 0.04 + . g53.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 154926 154926 . + . transcript_id "g53.t1"; gene_id "g53"; C.avellana_Jefferson_00003 AUGUSTUS exon 154926 154962 . + . transcript_id "g53.t1"; gene_id "g53"; C.avellana_Jefferson_00003 AUGUSTUS exon 155396 155522 . + . transcript_id "g53.t1"; gene_id "g53"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 155403 155405 . + 0 transcript_id "g53.t1"; gene_id "g53"; C.avellana_Jefferson_00003 AUGUSTUS intron 155523 156110 1 + . transcript_id "g53.t1"; gene_id "g53"; C.avellana_Jefferson_00003 AUGUSTUS CDS 155403 155522 1 + 0 transcript_id "g53.t1"; gene_id "g53"; C.avellana_Jefferson_00003 AUGUSTUS CDS 156111 156407 1 + 0 transcript_id "g53.t1"; gene_id "g53"; C.avellana_Jefferson_00003 AUGUSTUS exon 156111 156857 . + . transcript_id "g53.t1"; gene_id "g53"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 156405 156407 . + 0 transcript_id "g53.t1"; gene_id "g53"; C.avellana_Jefferson_00003 AUGUSTUS tts 156857 156857 . + . transcript_id "g53.t1"; gene_id "g53"; # protein sequence = [MAGKGGKGLLAAKTTAANKDKDKDKNKKTPVSKSSRAGIQFPVGRIHRHLKARISANGRVGATAAVYLASILEYLTAE # VLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g53 ### # start gene g54 C.avellana_Jefferson_00003 AUGUSTUS gene 166304 174831 0.06 - . g54 C.avellana_Jefferson_00003 AUGUSTUS transcript 166304 174831 0.06 - . g54.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 166304 166304 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS exon 166304 166788 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 166432 166434 . - 0 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS intron 166789 166959 0.96 - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS intron 167291 168373 0.97 - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS intron 168498 168898 0.98 - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS intron 169167 169275 1 - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS intron 169585 170247 0.99 - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS intron 170333 170784 0.98 - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS intron 170910 171936 1 - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS intron 172730 173271 0.99 - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS intron 173525 173969 0.91 - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS CDS 166432 166788 0.98 - 0 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS CDS 166960 167290 0.68 - 1 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS exon 166960 167290 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS CDS 168374 168497 0.99 - 2 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS exon 168374 168497 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS CDS 168899 169166 0.99 - 0 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS exon 168899 169166 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS CDS 169276 169584 0.81 - 0 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS exon 169276 169584 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS CDS 170248 170332 0.98 - 1 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS exon 170248 170332 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS CDS 170785 170909 1 - 0 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS exon 170785 170909 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS CDS 171937 172729 1 - 1 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS exon 171937 172729 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS CDS 173272 173524 0.99 - 2 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS exon 173272 173524 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS CDS 173970 174720 0.91 - 0 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS exon 173970 174831 . - . transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 174718 174720 . - 0 transcript_id "g54.t1"; gene_id "g54"; C.avellana_Jefferson_00003 AUGUSTUS tss 174831 174831 . - . transcript_id "g54.t1"; gene_id "g54"; # protein sequence = [MDPPLIDLDDDVLCTTNSSSPLNPSPPPPPTYVDRYFHSSSSDNEEDDETLYESVSSKSIESTSKRLDYMLQFLDRKL # SNDASSPQNERSSLPEFVAKGGGTGIFKLPVRSAVHPGRPPCLELRPHPLRESQIACFLRTITATDSQLWAASENGVRVWDFKDLYEPGIGDLKTGDE # YTAPFRESASTSPAMCLVGDEASGVVWSGHRDGRIRGWKMTMLDQNGDRRRRFKEGLSWQAHRGPVLSLAITSCGDMWSGLEGGIIKIWPWEAIEKAL # SLTNEERHMASLMVERSYIDLRSQLNVNGFSNIFTSDVKYLLSDNSRAKVWSAGYQSFALWNARTRELLKVFNTDGQIENRVEFSSAQDFSVEYISSS # KKEKMQSSFGFFQRSRNAIMGAADAVRRVAAKGAFGDDNRRTDALVLAIDGIIWTGCTSGLLVQWDGNGNRIQEFQYHSFAVQCFCTYGLRIWVGYAS # GTVQVLDLSGTLLGGWVAHSSPVIEMTIGAGYIFTLANHGGIRGWNITSPGPLDSPLCSELAGKEFLYTRIENVKILTGTWNVGQGRASHDSLMSWLS # FVGSDVGIVVVGLQEVEMGAGVLAMSAAKETVGLEGSSVGLWWLDMIGKTLDEGSTFERVGSRQLAGLLIAVWVRNNLKAHVGDVDAAAVPCGFGRAI # GNKGAVGLRLRVYDRIMCFVNCHFAAHLEAVNRRNADFGHVYQTMTFSRPTHLFNAVAGTVLYLFLFCSVAFSMYLVWLVYRSGLPLVLSVAVGSSSA # VQMLRGTNAIGAQTAEGMPELSEADLVIFLGDFNYRLDGVSYDEARDFISQRCFDWLRERDQLRAEMKSGNVFQGMSEAVITFPPTYKFERHQAGLAG # YDSGEKKRIPAWCDRILYRDSRSALVSECSLECPVVSSILSDHKPVRCIFNVDIARVDESIRRQELGEILGSNEKIKYMLEELCKIPETIVSTNNIIL # QNQDMSILRIANRCGKNEALFEIICEGQSSIKEGGEAADHCPRGSFGFPRWLEVTPLAGIIRPNNIAEVSVHHDEFQTLEEFVDGVPQNFWCEDNRDK # EVILVVKVRGCKTTETRNHRVRVRHCFTAKTKGIEPAPNSSQQIQGTVLQRSDNQRFSSSYDVVDHLRNLHSP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g54 ### # start gene g55 C.avellana_Jefferson_00003 AUGUSTUS gene 178106 179777 0.06 + . g55 C.avellana_Jefferson_00003 AUGUSTUS transcript 178106 179777 0.06 + . g55.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 178106 178106 . + . transcript_id "g55.t1"; gene_id "g55"; C.avellana_Jefferson_00003 AUGUSTUS exon 178106 178454 . + . transcript_id "g55.t1"; gene_id "g55"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 178137 178139 . + 0 transcript_id "g55.t1"; gene_id "g55"; C.avellana_Jefferson_00003 AUGUSTUS intron 178455 179516 0.97 + . transcript_id "g55.t1"; gene_id "g55"; C.avellana_Jefferson_00003 AUGUSTUS CDS 178137 178454 0.93 + 0 transcript_id "g55.t1"; gene_id "g55"; C.avellana_Jefferson_00003 AUGUSTUS CDS 179517 179624 0.97 + 0 transcript_id "g55.t1"; gene_id "g55"; C.avellana_Jefferson_00003 AUGUSTUS exon 179517 179777 . + . transcript_id "g55.t1"; gene_id "g55"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 179622 179624 . + 0 transcript_id "g55.t1"; gene_id "g55"; C.avellana_Jefferson_00003 AUGUSTUS tts 179777 179777 . + . transcript_id "g55.t1"; gene_id "g55"; # protein sequence = [MGKMVLVFVLLSLFQVLAVDAVDRVKIWPMPKSVSHGHGSLYMNKDFELKTEGTKYNDASGILKDGFSRLLHVLQVAH # VVDGNSSAADTSLLLQGLHVLVFSPDDELQYGIDESYKLSVPASGKPVFAHLEVGGTNHFSAA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g55 ### # start gene g56 C.avellana_Jefferson_00003 AUGUSTUS gene 188246 191613 0.04 + . g56 C.avellana_Jefferson_00003 AUGUSTUS transcript 188246 191613 0.04 + . g56.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 188246 188246 . + . transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS exon 188246 188403 . + . transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS exon 188628 188726 . + . transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 188644 188646 . + 0 transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS intron 188727 189783 0.9 + . transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS intron 190035 191017 0.96 + . transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS CDS 188644 188726 0.9 + 0 transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS CDS 189784 190034 1 + 1 transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS exon 189784 190034 . + . transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS CDS 191018 191292 0.98 + 2 transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS exon 191018 191613 . + . transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 191290 191292 . + 0 transcript_id "g56.t1"; gene_id "g56"; C.avellana_Jefferson_00003 AUGUSTUS tts 191613 191613 . + . transcript_id "g56.t1"; gene_id "g56"; # protein sequence = [MNESQAYQYFVLRAQNIALSHGYELVNWLGGGVAKLVVEAGLRCIVSNQDKWYLDHLDTTWQQFYMNEPLTNITNPEQ # QKLVIGGEVCMWGEHIDESDIEQTIWPRAAAAAAARVACLWGIVALTIYIKVVTDXXXXXXXVDPFTNEERLWTSYNKLAKDPRQVTGRLAHFRCLLN # QRGVAAAPLAGPGRVAPEEPGSCYSQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g56 ### # start gene g57 C.avellana_Jefferson_00003 AUGUSTUS gene 192046 196591 0.19 - . g57 C.avellana_Jefferson_00003 AUGUSTUS transcript 192046 196591 0.19 - . g57.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 192046 192046 . - . transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS exon 192046 192551 . - . transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 192150 192152 . - 0 transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS intron 192552 192676 0.99 - . transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS intron 192850 193335 0.99 - . transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS intron 193940 194054 1 - . transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS intron 194363 195933 0.98 - . transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS CDS 192150 192551 1 - 0 transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS CDS 192677 192849 0.99 - 2 transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS exon 192677 192849 . - . transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS CDS 193336 193939 0.99 - 0 transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS exon 193336 193939 . - . transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS CDS 194055 194362 0.98 - 2 transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS exon 194055 194362 . - . transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS CDS 195934 196315 1 - 0 transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS exon 195934 196591 . - . transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 196313 196315 . - 0 transcript_id "g57.t1"; gene_id "g57"; C.avellana_Jefferson_00003 AUGUSTUS tss 196591 196591 . - . transcript_id "g57.t1"; gene_id "g57"; # protein sequence = [MNSANHWGGSFEINTAEVSASGEYDRSRSGEWDGAALYHHQHLDETQQSWLLGPPEKKKNKYVDFGCIIVSRKALKWI # LGSFVVAFCVIALPIIITKSLPKHKPHPPPPDNYSVALNKALLFFNAQKSGNLPKNNGIPWRGNSGLNDGINDTDLKGGLIGGYYDAGDNVKFHFPMA # YAMTMLSWSMIEYSHKYKTIDEYNHVRDIIKWGTDYLLLTFNSSATKIDKIYCQVGGHQNGTDVPDDHTCWQKPEEMEYTRPTQTCVSGPDLAGEMAA # ALAAASIVFRDNGAYSSKLIKGAQTLFAFARDSGKRTRYSNSGGSSYIAPYYNSTGYYDEYMWGAAWLYYATGNKTYLSLATNEGIPRNAKAFYMTPD # LSVPSWDNKLPQAMLLLTRLRIFLNPGYPYEDMLRMYHNVTGLNMCSYLNSFHVFNWTRGGMIMLSRGKAQNLQYVANTAFLASLFVDYLNATGVPGW # NCGPNYVSSDVLRNFATSQMDYILGKNPMNMSYVAGYGAKFPKYIHHRGASTPNDHKYYSCKVGWQWQDSKKPNPNNITGAMVGGPDQFDQFHDVRTN # YNYTEPTLAGNAGLVAALVSLTSTAGNGIDTNGIFSAVPPQYPQSPSPPPPWRP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g57 ### # start gene g58 C.avellana_Jefferson_00003 AUGUSTUS gene 200296 207477 0.01 + . g58 C.avellana_Jefferson_00003 AUGUSTUS transcript 200296 207477 0.01 + . g58.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 200296 200296 . + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS exon 200296 202620 . + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 200461 200463 . + 0 transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS intron 202621 203982 1 + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS intron 204178 205124 0.94 + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS intron 205406 206273 0.56 + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS intron 206454 206746 1 + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS intron 206925 207010 0.63 + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS CDS 200461 202620 1 + 0 transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS CDS 203983 204177 0.95 + 0 transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS exon 203983 204177 . + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS CDS 205125 205405 0.93 + 0 transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS exon 205125 205405 . + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS CDS 206274 206453 1 + 1 transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS exon 206274 206453 . + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS CDS 206747 206924 1 + 1 transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS exon 206747 206924 . + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS CDS 207011 207022 0.62 + 0 transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS exon 207011 207477 . + . transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 207020 207022 . + 0 transcript_id "g58.t1"; gene_id "g58"; C.avellana_Jefferson_00003 AUGUSTUS tts 207477 207477 . + . transcript_id "g58.t1"; gene_id "g58"; # protein sequence = [MPSAEAEAEALFRAKTISEIRNVEASTRAQIQFKQEELRQLVGARYRDLIDSADSIVLMKNSCHAISSNISSINNAIR # FLSSEIPKSMASPNPTRSPIYGIACRVKYLVDTPENIWGCLDESMFLEAAARYARAKHVHDRLMNREDRGELSILSSFPLLQHQWQIVESFKVQISQR # SRERLLEQRGLPILAYADALAGVAVMDELDAKQVLALFLDTRKSWISQTLGNCAHSLNHDANCDVVVSVFCEVLSIIQISVGQVGELFLQVLNDLPSF # YKVALGSPPASQLFGGIPNPDEEVRLWKSFRDKLELVMVMLEKEYIARTCSLWLRECGQELVNKINGRYLIDAIGSGQDLALAEKSIRETVESKAVLA # GSLEWLKSVFGSEIELPWTRIRELVLVDDSDLWDLIFEDAFVSRMKAIIDVGFDDLTRVVNVAESIRAIGENYSGGQIDFQGYLNRPSTGGGVWFIES # PAKKAGALSGIKAPPEENDIGTCLNAYFGPQVSRIKDVVGSRCQSVLEDLLCFLESPKAALRLKVLAQYLQNKCYESMSTILMQLRTELDNLYASMEN # ANKEGHSVPPAITVERSLFIGRLLFAFQFHSKHIQVILGSPRYWATETVSTVFDKLPSLLRQSRVVADASVSDSPGRQLPICSKRQTSLATAALVGAI # ETANPKLEEFCGMTRDLCIRAHSLWIIWLSDELSVILSRGLGQDDSLSSTTPLRGWEETVVKQEQSDEGQSEMKISLPSMPSLYIVSFLFRACEEVHR # IGGHVLDKTILQKFALRLLEKVIDIYGDFLSTREAGGSQLSEKGVLQILLDVRFAVDVLSGGSYGMGEEFSNGLRPKFHFGRKQDKGQKKTVVRERID # GLVNRLSQRLDPIDWLTYEQYLWENERQSYLRHAILFGFFVQLDRIYTDTVQKLPTNSESNIMRCSTVPRFKYLPISAPALSSRGTTKTSISTPSDDI # SSRTSWKAYTNGELSRKMDLDDNSSFGVAAPLLKSFMQLHM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g58 ### # start gene g59 C.avellana_Jefferson_00003 AUGUSTUS gene 224026 225921 0.37 - . g59 C.avellana_Jefferson_00003 AUGUSTUS transcript 224026 225921 0.37 - . g59.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 224026 224026 . - . transcript_id "g59.t1"; gene_id "g59"; C.avellana_Jefferson_00003 AUGUSTUS exon 224026 224767 . - . transcript_id "g59.t1"; gene_id "g59"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 224114 224116 . - 0 transcript_id "g59.t1"; gene_id "g59"; C.avellana_Jefferson_00003 AUGUSTUS CDS 224114 224752 1 - 0 transcript_id "g59.t1"; gene_id "g59"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 224750 224752 . - 0 transcript_id "g59.t1"; gene_id "g59"; C.avellana_Jefferson_00003 AUGUSTUS exon 225829 225921 . - . transcript_id "g59.t1"; gene_id "g59"; C.avellana_Jefferson_00003 AUGUSTUS tss 225921 225921 . - . transcript_id "g59.t1"; gene_id "g59"; # protein sequence = [MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRD # PVYGCVGVISLLQHQLRQLQMDLSCAKSELSKYQNLGITSHGLIAAAAAAATATNHNHQQNLGINLIGGGGRDHHHYHHQFFPNQQQMIRSFDTGNNY # DASLLAMNVSASIGQLSQFQQPRAATGDDRRTIDPS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g59 ### # start gene g60 C.avellana_Jefferson_00003 AUGUSTUS gene 229416 236111 0.01 - . g60 C.avellana_Jefferson_00003 AUGUSTUS transcript 229416 236111 0.01 - . g60.t1 C.avellana_Jefferson_00003 AUGUSTUS tts 229416 229416 . - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS exon 229416 230295 . - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 229924 229926 . - 0 transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS intron 230296 230400 0.45 - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS intron 231049 231126 0.8 - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS intron 231496 232718 0.75 - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS intron 233139 233371 0.46 - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS intron 233675 235120 0.36 - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS intron 235706 235814 0.58 - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS CDS 229924 230295 0.81 - 0 transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS CDS 230401 231048 0.44 - 0 transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS exon 230401 231048 . - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS CDS 231127 231495 0.63 - 0 transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS exon 231127 231495 . - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS CDS 232719 233138 0.42 - 0 transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS exon 232719 233138 . - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS CDS 233372 233674 0.41 - 0 transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS exon 233372 233674 . - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS CDS 235121 235705 0.25 - 0 transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS exon 235121 235705 . - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS CDS 235815 236033 0.57 - 0 transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS exon 235815 236111 . - . transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 236031 236033 . - 0 transcript_id "g60.t1"; gene_id "g60"; C.avellana_Jefferson_00003 AUGUSTUS tss 236111 236111 . - . transcript_id "g60.t1"; gene_id "g60"; # protein sequence = [MAEELSKLWENLKLTKDEECIEVDIQERELDVRTRYGKACVVGKLIVDHLMSKEIIKKTLIRWWKPTGNLVFKDFDGL # AQPSDFTFDKATFWVRMINLPLACMGNEIGLKIGATMGEVEAVDTEANGMGWGEFLRVKVRLDLTKPLLHGRKLNLQGKLVWITFQYERLPIFCFHCG # VLSHGKNGCLNKSEFRNQETTPRYGPWLRAASPTRKPERGFGRYTMNKGQSTYDQHERAGKEKKKSVEREDNTGFGWKYDTADSGKGADSGGFTWSNR # QDGLKLIKERLDRGVANHEWRVLFPDAEVIVETTICSDHALLTLHLLRRNSPACQKPRFRFEACWALXXXXHLFRSCPSYTTPVAKEWSSLSKAKGLL # EREELWWKQRAKEDWLKYGDRNTKYYHACANSKCKRNYVGLITNENGLKWSKPEDVGKAFVLYFTKLFSKGQNSDLNPCIQHLGCRVSLEMNLELTKS # FTTEEITAALFQMSPLKAPGSDGLNACFFQKNWSTMGDEEKEKQIHWMNWDKMGVAKVYGGMGFRDLACFNKALLAKQIWRMWKTPDSLIAHIIKAKY # HPGCSILDTPLGRKPSFAWRSIQSSSALVREGLIWRIGNGRTIRIWEDRWIPIPSTFKVQSCPRIFSKEEREIILSIPISHTNQEDKLIWQGTTTWTF # TVKSAYHLQKEIVLATKAEGSSRNSKSNIWHHLWSLQIPNVETNFIWRACHEILPTRDNLRRRKIIDTPLCPICALEPKTTFHILWQCSSARDVWSAG # TIIFQKSSYVGPDFLQVVEGMFRKCSSAEFHLFVRVLRRNEVVHGGSFLHPNTVMQQASQAADIFKSQMEQCRGSLTTAPSPLDGNLYAAKCSPRPGH # LDPLSAEALVAFMAIHLCKELGLNNLMMESDSKVLVNAMNSTDMDDSGTGQLVADIKASLVGIPRWELDHISRKHNQAAHALARQALKDNVERVWGSE # SPDCIRDILEA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g60 ### # start gene g61 C.avellana_Jefferson_00003 AUGUSTUS gene 239516 250802 0.03 + . g61 C.avellana_Jefferson_00003 AUGUSTUS transcript 239516 250802 0.03 + . g61.t1 C.avellana_Jefferson_00003 AUGUSTUS tss 239516 239516 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS exon 239516 240196 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS start_codon 239760 239762 . + 0 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS intron 240197 240426 0.54 + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS intron 240689 241287 0.35 + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS intron 241439 245022 0.4 + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS intron 245203 246971 0.6 + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS intron 247192 247765 0.91 + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS intron 248026 248657 0.83 + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS intron 248786 249241 0.72 + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS intron 249446 250243 0.98 + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS intron 250295 250455 0.97 + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS CDS 239760 240196 0.93 + 0 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS CDS 240427 240688 0.17 + 1 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS exon 240427 240688 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS CDS 241288 241438 0.36 + 0 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS exon 241288 241438 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS CDS 245023 245202 0.41 + 2 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS exon 245023 245202 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS CDS 246972 247191 0.61 + 2 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS exon 246972 247191 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS CDS 247766 248025 0.96 + 1 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS exon 247766 248025 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS CDS 248658 248785 0.83 + 2 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS exon 248658 248785 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS CDS 249242 249445 0.91 + 0 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS exon 249242 249445 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS CDS 250244 250294 0.98 + 0 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS exon 250244 250294 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS CDS 250456 250698 0.99 + 0 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS exon 250456 250802 . + . transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS stop_codon 250696 250698 . + 0 transcript_id "g61.t1"; gene_id "g61"; C.avellana_Jefferson_00003 AUGUSTUS tts 250802 250802 . + . transcript_id "g61.t1"; gene_id "g61"; # protein sequence = [MLGSSFRTVRRLCSSFSSSVLLDDCSLQRHLNNSIGKASYGASSVIETNNCTNRASSSNEIGPCSSSLATSAHVLRSS # RAGARRPRPPRVRTRQQQKKMTTDADAYSAIELALDSVVKIFTVSSSPNYFLPWQNKXXXXXXXXXPXKILTNAHVVADHTFVLVRKHGSPTKYRAEV # QAIGHECDLAILVVESEEFWEGMNFLELGDIPFLQEAVAVVGYPQGNITDIFNNSSIAIVKDDLMCTFQSFYEHEMFEKSFKATFIALIPRKIGQLDV # KDFRPISLVGGDNISVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAIMGNKVAGVAFQNLAVVLGLKINLAKLELVPMGNVDNVDGLASI # FGCGVSSSPLKYFDLPLGAFFCLVDDPRKDPSHGQSKEAACHCGRYIIPVPVIKHFLAGVEESGKYVGFCSLGLLCQPTENIQLRNHFKMQSEMTGVL # VSKINPLSDAYNILKKDDIILTFDGVPIANDGTVPFRNRERITFDYLVSMKKPNETAVVKVFRDGKEYEFNITLRPLQPLVPVHQFDKLPSYYIFAGL # LFVPLTQPYLHEYGEDWYNTSPRRLCERALRELPKKAGEQLVILSQVLMDDINAGYERLAELQVKKVNGVEIENLKHLCQLVENCSKESVRFDLDDER # VIALNYHLAKIATTIILKRHRIPSAMSSDLNDQQKGVELGLVCSR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g61 ### # # ----- prediction on sequence number 4 (length = 226378, name = C.avellana_Jefferson_00004) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 4 on both strands # start gene g62 C.avellana_Jefferson_00004 AUGUSTUS gene 6816 10141 0.06 + . g62 C.avellana_Jefferson_00004 AUGUSTUS transcript 6816 10141 0.06 + . g62.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 6816 6816 . + . transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS exon 6816 6966 . + . transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 6855 6857 . + 0 transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS intron 6967 8154 0.64 + . transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS intron 8256 8347 0.88 + . transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS intron 8415 9465 0.9 + . transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS intron 9715 9792 0.27 + . transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS CDS 6855 6966 0.83 + 0 transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS CDS 8155 8255 0.58 + 2 transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS exon 8155 8255 . + . transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS CDS 8348 8414 0.97 + 0 transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS exon 8348 8414 . + . transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS CDS 9466 9714 0.37 + 2 transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS exon 9466 9714 . + . transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS CDS 9793 9995 0.58 + 2 transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS exon 9793 10141 . + . transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 9993 9995 . + 0 transcript_id "g62.t1"; gene_id "g62"; C.avellana_Jefferson_00004 AUGUSTUS tts 10141 10141 . + . transcript_id "g62.t1"; gene_id "g62"; # protein sequence = [METNKAEDDELIIPSPFEPICKWRKEERSNVLEVHLQEPSQQIITRMGQAATLDTPMEDSASIVKAMVQANVGGQSAP # DSNSPAKQPTSHPSDAVVNLTNPHRLPGKFDQFFTQESGDLAGTSPSAEKDESWLRASEGKTRGDEEWGHSGGVQALELGGGGGQGRLVRFQGGGCKG # GYEAPEGGAGAHCYTQRXXXXLRVVTVLLLGGDDAEKERAEEAMPMRLQREEQELTAILKGTSMTPT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g62 ### # start gene g63 C.avellana_Jefferson_00004 AUGUSTUS gene 10632 12421 0.07 - . g63 C.avellana_Jefferson_00004 AUGUSTUS transcript 10632 12421 0.07 - . g63.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 10632 10632 . - . transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS exon 10632 11094 . - . transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 10789 10791 . - 0 transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS intron 11095 11262 0.96 - . transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS intron 11368 11618 0.96 - . transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS intron 11781 11858 0.95 - . transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS intron 11984 12264 0.65 - . transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS CDS 10789 11094 0.99 - 0 transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS CDS 11263 11367 0.96 - 0 transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS exon 11263 11367 . - . transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS CDS 11619 11780 0.97 - 0 transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS exon 11619 11780 . - . transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS CDS 11859 11983 0.7 - 2 transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS exon 11859 11983 . - . transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS CDS 12265 12295 0.76 - 0 transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS exon 12265 12421 . - . transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 12293 12295 . - 0 transcript_id "g63.t1"; gene_id "g63"; C.avellana_Jefferson_00004 AUGUSTUS tss 12421 12421 . - . transcript_id "g63.t1"; gene_id "g63"; # protein sequence = [MAVSYILGIVALWIYYGVEKTAVLVVTVNVIGATLAFVYVVLSLVYAPRGTRAKTAIFAAVFDVGVLATAMAITRFML # HGDTRIKVLGVLGAFLTIIMYGSPMAAMINSSEHVPFLPPFFTFLNGGIWTIYAILAKDLFMGIPNGVGTVSGVVQLVLYAKRKNSNSSQITSEHLED # QSQRQPLLSSPNDLEHAPSTDQLQQQPCLSSSNDLEHAASTDQSQHQPRLPSSQIISEDLGDQSQH] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g63 ### # start gene g64 C.avellana_Jefferson_00004 AUGUSTUS gene 13796 14572 0.06 + . g64 C.avellana_Jefferson_00004 AUGUSTUS transcript 13796 14572 0.06 + . g64.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 13796 13796 . + . transcript_id "g64.t1"; gene_id "g64"; C.avellana_Jefferson_00004 AUGUSTUS exon 13796 14572 . + . transcript_id "g64.t1"; gene_id "g64"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 13825 13827 . + 0 transcript_id "g64.t1"; gene_id "g64"; C.avellana_Jefferson_00004 AUGUSTUS CDS 13825 14301 0.81 + 0 transcript_id "g64.t1"; gene_id "g64"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 14299 14301 . + 0 transcript_id "g64.t1"; gene_id "g64"; C.avellana_Jefferson_00004 AUGUSTUS tts 14572 14572 . + . transcript_id "g64.t1"; gene_id "g64"; # protein sequence = [MYIIAGPNRAFGDLIAASGITDEMLDSLIALKDFEGIEGLPPLSEIEEIRYDKNTRKNTRADIERQKQEEVAKARVRQ # VDDKGRAYGTGRRKCSIARVWIEPGDGKFVVNDKQFDVYFPMLDHRAALLRPFSETKTLGLWDVSCTVKGGGVSGEFECS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g64 ### # start gene g65 C.avellana_Jefferson_00004 AUGUSTUS gene 19036 21785 0.2 + . g65 C.avellana_Jefferson_00004 AUGUSTUS transcript 19036 21785 0.2 + . g65.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 19036 19036 . + . transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS exon 19036 19140 . + . transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS exon 19966 20107 . + . transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 19988 19990 . + 0 transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS intron 20108 21263 0.77 + . transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS intron 21333 21446 0.77 + . transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS CDS 19988 20107 0.89 + 0 transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS CDS 21264 21332 0.77 + 0 transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS exon 21264 21332 . + . transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS CDS 21447 21623 1 + 0 transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS exon 21447 21785 . + . transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 21621 21623 . + 0 transcript_id "g65.t1"; gene_id "g65"; C.avellana_Jefferson_00004 AUGUSTUS tts 21785 21785 . + . transcript_id "g65.t1"; gene_id "g65"; # protein sequence = [MAKKRTNVIPIIEDARHPSKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTQPAEAVFQ # SEVNKLKQDQFKPFEQVTLEPYERDHACVVGGYRVPKKSKAAA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g65 ### # start gene g66 C.avellana_Jefferson_00004 AUGUSTUS gene 23763 27111 0.22 - . g66 C.avellana_Jefferson_00004 AUGUSTUS transcript 23763 27111 0.22 - . g66.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 23763 23763 . - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS exon 23763 24129 . - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 24022 24024 . - 0 transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS intron 24130 24419 0.92 - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS intron 24539 24636 1 - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS intron 24876 25100 0.86 - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS intron 25158 25679 0.84 - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS intron 26306 26828 1 - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS CDS 24022 24129 0.69 - 0 transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS CDS 24420 24538 0.95 - 2 transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS exon 24420 24538 . - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS CDS 24637 24875 1 - 1 transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS exon 24637 24875 . - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS CDS 25101 25157 0.86 - 1 transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS exon 25101 25157 . - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS CDS 25680 26305 1 - 0 transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS exon 25680 26305 . - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS CDS 26829 27077 1 - 0 transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS exon 26829 27111 . - . transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 27075 27077 . - 0 transcript_id "g66.t1"; gene_id "g66"; C.avellana_Jefferson_00004 AUGUSTUS tss 27111 27111 . - . transcript_id "g66.t1"; gene_id "g66"; # protein sequence = [METPLIDGDGDYSPARTVAEVRRVFCRETVKMWKIAGPIAFNILCQFGTNSVTNIFVGHMGDIELSAVAIALSVVGTF # SFGFMLGMGSALETLCGQAFGAGQVYLLGVYMQRSWIILWVSCIILLPIYVFATPILKLLGQADEIADLAGEFTILIIPQLFSLAINFPTSKFLQAQS # KVTVLAWIGFVALIIHVGLLWLFIYVFDWGLTGAAVAFNITGWEIAVAQVVYVTVWCNEGWTGLSWTAFNDIWAFVRLSLASAVMLCLEIWYMMSIII # LTGHLDNAIIAVDSLSICMNFNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLLGIFFMVVILITKDYFAIIFTSSVELRQAVSKL # AFLLGVTMVLNSVQPVISGVAIGGGWQALVAYINLGSYYIFGLPLGYLLGYKANLGVAGLWGGMICGTALQTLLLVIVLSRTNWNKEVRKILL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g66 ### # start gene g67 C.avellana_Jefferson_00004 AUGUSTUS gene 39836 42192 0.23 + . g67 C.avellana_Jefferson_00004 AUGUSTUS transcript 39836 42192 0.23 + . g67.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 39836 39836 . + . transcript_id "g67.t1"; gene_id "g67"; C.avellana_Jefferson_00004 AUGUSTUS exon 39836 42192 . + . transcript_id "g67.t1"; gene_id "g67"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 40011 40013 . + 0 transcript_id "g67.t1"; gene_id "g67"; C.avellana_Jefferson_00004 AUGUSTUS CDS 40011 42008 1 + 0 transcript_id "g67.t1"; gene_id "g67"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 42006 42008 . + 0 transcript_id "g67.t1"; gene_id "g67"; C.avellana_Jefferson_00004 AUGUSTUS tts 42192 42192 . + . transcript_id "g67.t1"; gene_id "g67"; # protein sequence = [MASGFTAGGAPDFFSGRSTTMTNQPQHPQQGYRSQLPGLLTDPSIQIARQQAAASSLIGKRTLADFRTPQFQNPPPLN # SLFLRSVKPRRNYHHSSPISTLSPIDFSTSNPTCLTSSPEASSLLLSSQQQQLQQQQRYGLPIIQQHHQQQFRPQPIDAIGNSRIVPQHNTATISTLP # GVPYMNTTTMTTTLINSTVPQDRLLSSAQDLSEQKMMNHRLQELEKQLLDDDDENGDEGDAVSVITSTNSEWSETIQNLISPTQKPISPSPTSSTSSS # TSSNSSVPSPGSTCLKQSLMEAATNISEGRNDAAAEILTRLAQFSSNHKGSSEERLMSYMVATLKSRMNPSENPPPVAELFHKEHAEATQLLYEMSPC # FKLGFMAANLAILDAALEDESESGNRIHVIDFDVGQGGQYVNLLHALSARQKGKPFFVKITAVSDSDGARERLGIVGEMLSRLADSVGVSFAFKMAES # QKLSELTRESLGCDLDEPLAVNFAFKLCRMPDESVSTENPRDELLRRVKAMEPRVVTLVEQEMNANTAPFLARVAETSAYYGALFDSMEATVPRDSPN # RVKVEEGLSRRLGNSVACEGRDRVERCEVFGKWRARMGMAGFQLRPLGRNVAEAMRARLNGVGNPNRVKPDFTVSEENGGVSFGWMGRALTVASAWR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g67 ### # start gene g68 C.avellana_Jefferson_00004 AUGUSTUS gene 49326 50780 0.09 + . g68 C.avellana_Jefferson_00004 AUGUSTUS transcript 49326 50780 0.09 + . g68.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 49326 49326 . + . transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS exon 49326 49448 . + . transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 49391 49393 . + 0 transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS intron 49449 49546 0.99 + . transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS intron 50015 50105 1 + . transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS intron 50162 50263 0.99 + . transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS CDS 49391 49448 0.67 + 0 transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS CDS 49547 50014 1 + 2 transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS exon 49547 50014 . + . transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS CDS 50106 50161 1 + 2 transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS exon 50106 50161 . + . transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS CDS 50264 50494 0.99 + 0 transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS exon 50264 50780 . + . transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 50492 50494 . + 0 transcript_id "g68.t1"; gene_id "g68"; C.avellana_Jefferson_00004 AUGUSTUS tts 50780 50780 . + . transcript_id "g68.t1"; gene_id "g68"; # protein sequence = [MAMQAGRLIHDQNFNVHCNGASVGGKTNVQKAERKGGLGARKPLSDLSNSEKHVLNQAPKKQASKKVTFIDEHSGASK # MRNDTNKKTSISRASAKLQTGSRKALSDISNSGKAHLNGEATNKNLNLKLGVVAEEALHHVSAIAEERFLHNHQECIKAQTKSMDLDEFLKTVGLDND # LSKCLATPRAPSMPRKLKPENSLKKYHLELEEMAEQLIEDGGGSSWKHGLLSSKPAASPLPPCMTPKSPRYSTLWKDYDLINFKLMETPELPRH] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g68 ### # start gene g69 C.avellana_Jefferson_00004 AUGUSTUS gene 51456 58808 0.02 + . g69 C.avellana_Jefferson_00004 AUGUSTUS transcript 51456 58808 0.02 + . g69.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 51456 51456 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 51456 51873 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 51517 51519 . + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS intron 51874 51962 1 + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS intron 52020 53100 0.98 + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS intron 53212 53397 0.98 + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS intron 53485 53578 0.91 + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS intron 53693 53790 0.98 + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS intron 53998 54543 0.79 + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS intron 54682 56522 0.2 + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS intron 56685 57129 0.98 + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS intron 57330 57879 0.72 + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS intron 57964 58075 0.95 + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 51517 51873 1 + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 51963 52019 1 + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 51963 52019 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 53101 53211 0.98 + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 53101 53211 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 53398 53484 0.98 + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 53398 53484 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 53579 53692 0.93 + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 53579 53692 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 53791 53997 0.77 + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 53791 53997 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 54544 54681 0.74 + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 54544 54681 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 56523 56684 0.2 + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 56523 56684 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 57130 57329 0.99 + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 57130 57329 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 57880 57963 0.71 + 1 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 57880 57963 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS CDS 58076 58217 0.99 + 1 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 58076 58242 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 58215 58217 . + 0 transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS exon 58565 58808 . + . transcript_id "g69.t1"; gene_id "g69"; C.avellana_Jefferson_00004 AUGUSTUS tts 58808 58808 . + . transcript_id "g69.t1"; gene_id "g69"; # protein sequence = [MVVCLRLPSLTSSLFSSATANSLRRSPAFLRRRSIRQLPPSTLAAARFSAQGTAATEERADEKSKSGANGQERVITPR # SQDFNAWYLDIIANAELADYGPVRGTMVIRPYGYAIWEAIQEYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVV # RPTSETIVNHMFTQWIHSYRDLPLMVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAENEAIQMINVYTKFAYEQAAIPVIAGRKSRVETFA # GASRTYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFTDENGQRLHVWQTSWAVSTRFVGGIIMTHGDDAGLMLPPRLAPIQVVIIPIWKKDDDKTG # VLNAASSVKDLLQTAGFKVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSSGSVVISRRDIPGKQGKVFGISMEPSILAAYVKDKLGEIQASLLG # QATLFRDSNIVDVSSYDELKVAISQGKWARGPWSASDEDELKVKEETGATIRCFPFEQPQGIKTCLMTGNPAEEVAIFAKSY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/11 # CDS introns: 0/10 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/3 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g69 ### # start gene g70 C.avellana_Jefferson_00004 AUGUSTUS gene 60346 64618 0.02 + . g70 C.avellana_Jefferson_00004 AUGUSTUS transcript 60346 64618 0.02 + . g70.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 60346 60346 . + . transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS exon 60346 60654 . + . transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 60599 60601 . + 0 transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS intron 60655 60924 0.62 + . transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS intron 61181 61293 0.94 + . transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS intron 63201 63287 1 + . transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS CDS 60599 60654 0.65 + 0 transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS CDS 60925 61180 0.68 + 1 transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS exon 60925 61180 . + . transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS CDS 61294 63200 0.94 + 0 transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS exon 61294 63200 . + . transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS CDS 63288 64542 1 + 1 transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS exon 63288 64618 . + . transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 64540 64542 . + 0 transcript_id "g70.t1"; gene_id "g70"; C.avellana_Jefferson_00004 AUGUSTUS tts 64618 64618 . + . transcript_id "g70.t1"; gene_id "g70"; # protein sequence = [MNHFAGEVVCQVEGNPNQQLEFCSCNRSFAVSSRYFVVGRPSVSASMMSTVGLELANFLNADLSWKRVSKGSRSAPRR # PRKPVLDIADKTTRRADDTTVSESEKVGVAVLGRRFRENIEHVPIKKRRFPFRSPPPPPARLSSPHLDISETLMATDVNGGVGVGSGKISEVISEKLG # HTEDFSGIEMLAAIACNNRMVDDTDHAGGNLVVEKSTQDRTETSTSAIALAETTASLETVNISSHEDGMDGSSLQDNTVENLPSDNDGKTTENFVSSR # DERLHWDLNVSMDAWEKPYDVHPQKNVVENISDSKQSEKLQVFEGCELQRETMDIKHDIEGAVQSTVGGVVSSDDHGDINIPVDLRVFSLGSDRSNGE # EHELQACSGLDRIHDKCVTTTTCNALESSTYDVAITKAPTEVVNMDVNVDPFHGSDDTITYTGASEKNGNISLDSVIAKESDVALTYAPVSERTTYKI # DGAIQKGDGTDTGTASGLHDDENTPEEMTSVDICLPLEPVPLEIKPVIRAAEVDAHYSESHCKDIHVSGQSVVTKDAKGQADIASVPHNAGVNSSLHV # GSEYEDGELRELNVHCCKENEGAYGELEFVNNYSHNMDTSDVDDVDYLTYEKVQVGIGCREERSFVRNTEKNVEVQQGSSLGSDTLIERTGHFATADA # VKEPLVRSETKSGVDNSPLGHKISDKLTVGVTEGSTMRKIPDDCMDGLNEKNCPLELVEPKISEKDSEFVQRSRSDNFDSCTRAEMDDTTDHSIGRDK # SALHVKVPTVGRLISPSTGYWDSKHRESPTYFDSYGSGRPRPKSAVESCGYVMTSDCTMSGAVWVARVDNRVYQPSPRRRSPSDRADAYGIRRGMAPV # REISSDRKFQRYPVGGVSRGPREEYHRPVLDGSRDYSYRVPYHMAKGEHSISSPSKGRPLHYTQPYRKSRSRSRSRSPVEWLLPRERSEGSRHHRSQS # PDHRFEAGMERVRLPLQKPIFSADNEAGFMSPPRRRFSPQRNSRWFGDQIESVDHFKGRRFSVRTFQQSQRFDPVHSPQGLDSDDYFEPMIRPGRFVD # MDSTGRGCSDNDRRKHGGRYEIIHPVRRYGKNGVVRRFRYGAEDCLVSQNSHNYDDYDRGIDRRLRDVPRRVNEDKGHLRYNHGGLFDSSSNSFRTQD # A] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g70 ### # start gene g71 C.avellana_Jefferson_00004 AUGUSTUS gene 65153 67681 0.03 - . g71 C.avellana_Jefferson_00004 AUGUSTUS transcript 65153 67681 0.03 - . g71.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 65153 65153 . - . transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS exon 65153 65487 . - . transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 65348 65350 . - 0 transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS intron 65488 65745 0.54 - . transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS intron 65947 66042 0.48 - . transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS intron 66455 66716 1 - . transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS intron 66917 67016 0.94 - . transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS CDS 65348 65487 0.54 - 2 transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS CDS 65746 65946 0.48 - 2 transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS exon 65746 65946 . - . transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS CDS 66043 66454 0.69 - 0 transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS exon 66043 66454 . - . transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS CDS 66717 66916 1 - 2 transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS exon 66717 66916 . - . transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS CDS 67017 67470 0.89 - 0 transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS exon 67017 67681 . - . transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 67468 67470 . - 0 transcript_id "g71.t1"; gene_id "g71"; C.avellana_Jefferson_00004 AUGUSTUS tss 67681 67681 . - . transcript_id "g71.t1"; gene_id "g71"; # protein sequence = [MGLTSEASIKYRIWLAHIVMTLFTAHGLSYIVFWAKTHQISQMLKWGKIGISNVAGEVALLSGILMWATSFSGIRQKL # FELFFYTHHLYVIFVVFFVLHVEFSYSCIMLPGFYLFLIDRFLRFLQSQQRVCLVSARILPCEAVELNFSKNPGLSYTPTSSVFIYVPSISKLQWHPF # SITSSSKMDLDKLSVVIKSNGSWSQKMYQMLSSSPSPKDRMEHDMLVMVSGGSGITPFISIIRELLFRSNTKGGKNPPRVLLICAFKKSLDLTMLQLL # FPVSGTNLDTSCLQLQIEAYVTGEKEPTTDDQKLLQTIWFKPNALDAPISAVLGTNNWLWLAAIITSSFVVFLLLIGILTRLKATAAFLCNKKQNGKE # LRQIQNMDVPTPMKSPGSWFHNEDRELESLPHQSFVQTTKIHHGERPNLKKILLECKGSSIGVLVSGPKKMRQEVAAICSSGLANNLHFDSISFSW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g71 ### # start gene g72 C.avellana_Jefferson_00004 AUGUSTUS gene 70407 74501 0.06 - . g72 C.avellana_Jefferson_00004 AUGUSTUS transcript 70407 74501 0.06 - . g72.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 70407 70407 . - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS exon 70407 70745 . - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 70606 70608 . - 0 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS intron 70746 70848 0.94 - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS intron 71565 71658 1 - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS intron 71900 72017 0.98 - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS intron 72346 72641 0.7 - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS intron 72765 73299 0.85 - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS intron 73535 73833 0.53 - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS intron 73969 74069 0.44 - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS intron 74173 74301 0.41 - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS CDS 70606 70745 1 - 2 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS CDS 70849 71564 0.94 - 1 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS exon 70849 71564 . - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS CDS 71659 71899 0.98 - 2 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS exon 71659 71899 . - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS CDS 72018 72345 1 - 0 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS exon 72018 72345 . - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS CDS 72642 72764 0.7 - 0 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS exon 72642 72764 . - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS CDS 73300 73534 0.98 - 1 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS exon 73300 73534 . - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS CDS 73834 73968 0.43 - 1 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS exon 73834 73968 . - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS CDS 74070 74172 0.41 - 2 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS exon 74070 74172 . - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS CDS 74302 74455 0.46 - 0 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS exon 74302 74501 . - . transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 74453 74455 . - 0 transcript_id "g72.t1"; gene_id "g72"; C.avellana_Jefferson_00004 AUGUSTUS tss 74501 74501 . - . transcript_id "g72.t1"; gene_id "g72"; # protein sequence = [MNMKTVLIRMTFLAVFVWWLMVWVLLPTKRYRNRWTPVLDSKLNSTYFGKQGTNLLLFTFPMMFIAALGCVYLHVENK # SENINSKSSSSSVVTRRHRLAFWRRPVLVMAPLGIVTAVELAFAAMFVALLIWWEAKFRSVSLRLGYVGNICWAFLFFPVTRGSSILPLVGLTSESSI # KYHIWLGHLSMVLFASHAIGFIIYWAITHQMSQLAMVNDTYFARTSMAPEPLTFFYVDHCHERTSSTSKLKLDLMLEWSQDWVPNVAGEIAIVFAMAM # WVTSFPRVRRKMFEVFFYTHHLYTLYIFFYVLHVGVAYFCMILPGIFLFIVDRFLRFLQSRERVRLLSARLLPCQTVELSFSKSPGLNYNPTSTLFIN # VPSISKLQWHPFTVTSNCKMEPEKLSIVIKRGGSWSQKLFQQLSSSVEHLKVSVEGPYGPTTSSHLLRHESLVMVSGGSGITPFISIIREIICQTQNE # NSNIPRVLLICAFKNSADLTMLDLLLPISDTPISTKMQLQIEAYVTRENEQPSADAQKLIQTIWFKPHPSDSPISPALGPNNWLWLGAIISSSFLMFL # LILGIATRYYIYPIREENTSTGTYNFSFTSLWDMFLVCTCILVASSATFLWCKKQNSMQGKQIQDLEVPTPTTSSGSNWIYVADGELESLPHQSLVKA # AKVHFGARPDLKKIILECEGSDVGVLVCGPRQMRHAVANICSSGLAENLHLESISFNW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g72 ### # start gene g73 C.avellana_Jefferson_00004 AUGUSTUS gene 75896 84861 0.01 - . g73 C.avellana_Jefferson_00004 AUGUSTUS transcript 75896 84861 0.01 - . g73.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 75896 75896 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 75896 76510 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 76187 76189 . - 0 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 76511 77222 0.99 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 77465 77722 1 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 77879 78678 0.9 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 78790 79166 0.71 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 79394 79973 0.22 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 80061 80743 0.15 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 81064 81286 0.99 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 81529 81957 0.82 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 82114 82800 0.99 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 82912 83778 0.89 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS intron 84006 84521 0.96 - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 76187 76510 1 - 0 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 77223 77464 0.99 - 2 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 77223 77464 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 77723 77878 0.93 - 2 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 77723 77878 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 78679 78789 0.92 - 2 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 78679 78789 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 79167 79393 0.22 - 1 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 79167 79393 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 79974 80060 0.08 - 1 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 79974 80060 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 80744 81063 0.25 - 0 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 80744 81063 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 81287 81528 0.85 - 2 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 81287 81528 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 81958 82113 0.97 - 2 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 81958 82113 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 82801 82911 0.92 - 2 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 82801 82911 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 83779 84005 1 - 1 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 83779 84005 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS CDS 84522 84841 0.94 - 0 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS exon 84522 84861 . - . transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 84839 84841 . - 0 transcript_id "g73.t1"; gene_id "g73"; C.avellana_Jefferson_00004 AUGUSTUS tss 84861 84861 . - . transcript_id "g73.t1"; gene_id "g73"; # protein sequence = [MAAHLLSLRTPHFYFQRSDLSSRQVPTRPLTTCTFTSVPYDPSSSSTSSSSSANRTQTFLYLPLITERPNSTRSVTAR # SHLNLPLVSPNDHWGTWTALFATGAFGLWSEKTKIGSTLSGALTSTLIALAASNLGIIANEASAYSVVLEFLLPMAVPLLLFRADLRRVIKSTGTLLL # AFLIGSVATTVGTAVAYALVPMRSLGQDSWKIAAALMGRHIGGAVNYVAIAEALGVSPSVLAAGLAADNVICAVYFTTLFALASKIPPETSKSTNDVA # MDVESEPGNKLPVLQMATALAVSFAICKAGAFLTKYFGNQGGSLPAITAIVVILATAFPKQCGYLAPSGEAMALILMQVFFAVIGASGNIWSVINTAP # SIFLFALVQIAIHLAVILGLGRLFRIDLKLLLLASNANVGGPTTACGMATAKGWTSLVVPGILAGIFGIAIATFLGIAFGVTVLKFMSQLRYPIISPD # DHWGTWTALFATGAFGLWSEKTKIGSMVSAALVSTLVGLAASNIGIIPYEAPAYSIVLEFMLPLTVPLLLFRADLRSVIRSTGTLLLAFLLGSVATIV # GTVVAFLVVPMRSLGQDNWKIAAALMGSYIGGSVNYIAISEALGVSPSVLAAGVAADNVICAIYFVSLFALASKIPPEASTSVNDVAMDMESNSGGKL # PVLQAATAIATSFLICKTSTFLTSIYGIQGGNLPAITATVVILATLFPTQFGYLAPAGDAIALVLMQVFFAVVGASGSIWNVINTAPSIFMFALVQVS # VHLAVVLGLGKLFRFDLKLLLLASNANIGGPTTACGMATAKGWGSLVVPAILAGIFGIAIATFLGIGFGLTVLKHM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/12 # CDS introns: 0/11 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g73 ### # start gene g74 C.avellana_Jefferson_00004 AUGUSTUS gene 85764 87201 0.07 - . g74 C.avellana_Jefferson_00004 AUGUSTUS transcript 85764 87201 0.07 - . g74.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 85764 85764 . - . transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS exon 85764 86138 . - . transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 85839 85841 . - 0 transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS intron 86139 86209 0.98 - . transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS intron 86337 86452 0.93 - . transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS CDS 85839 86138 0.98 - 0 transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS CDS 86210 86336 0.93 - 1 transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS exon 86210 86336 . - . transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS CDS 86453 86511 0.34 - 0 transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS exon 86453 86526 . - . transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 86509 86511 . - 0 transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS exon 87104 87201 . - . transcript_id "g74.t1"; gene_id "g74"; C.avellana_Jefferson_00004 AUGUSTUS tss 87201 87201 . - . transcript_id "g74.t1"; gene_id "g74"; # protein sequence = [MDEKCENRLYIGNLDLRITEASLIKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAKLAKEKMHGKLACG # RPLVVRLASEKYLVETAEKSSKGAGESNKTSLSGSSSGQMNRSAKIAAIKNKLKALGEESSSAKKQKLAESISCTESLDNCSD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g74 ### # start gene g75 C.avellana_Jefferson_00004 AUGUSTUS gene 91106 94292 0.3 + . g75 C.avellana_Jefferson_00004 AUGUSTUS transcript 91106 94292 0.3 + . g75.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 91106 91106 . + . transcript_id "g75.t1"; gene_id "g75"; C.avellana_Jefferson_00004 AUGUSTUS exon 91106 94292 . + . transcript_id "g75.t1"; gene_id "g75"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 91192 91194 . + 0 transcript_id "g75.t1"; gene_id "g75"; C.avellana_Jefferson_00004 AUGUSTUS CDS 91192 93684 1 + 0 transcript_id "g75.t1"; gene_id "g75"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 93682 93684 . + 0 transcript_id "g75.t1"; gene_id "g75"; C.avellana_Jefferson_00004 AUGUSTUS tts 94292 94292 . + . transcript_id "g75.t1"; gene_id "g75"; # protein sequence = [MVTKNLFLPTILVSLVSFSFSTSFTPTDNYLLNCGSPTNISLYNRLFLADSAKPGSAFLSPGHSISLKNQNPPSELPA # LYHTARVFTSSSGYKFNIKKNGTHLVRFHFSPFVAQGFHLNSARFSVLVNGVLILRDLQLNSTNTVLREYILKVDRNVVEIVFTPVNVSGFGFVNAIE # VFTAPGDLIMDEGVKLIGAAGSQVYKNLSSQVLETIYRINVGGSKLTPFNDTLWRTWIPDDDYLLLKSAARRANTNYPPKYEAGGASRDIAPDNVYMT # AQEMNRENSSYQTFNITWNFPVASGSARYLVRLHFCDFVSRVLNSLYFNVYINEYLAYGDLDLSTLTFRVLASPVYVDFVVDSVDPGVVQVSVGPSVL # SNTLTMNAILNGAEIMKIENIESEETSPKKKNIWVVVGSIIGSFVGLCLLLLALLLAMKCRKKKPKPRPAESVGWTPLRVYGGSSHSRMSEGTAYASP # GPNGYFALRIPFADLQLATNNFDQNLIIGSGGFGMVFKGVLRDNTKVAVKRGVPGSRQGLPEFQTEITVLSKIRHRHLVSLVGYCEEQSEMILVYEYM # EKGPLKSHLYGSGLPPLTWKQRLEICIASARGLHYLHTGSAEGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCLDETHVSTGVKGSFGYLDPEYFR # RQQLTDKSDVYSFGVVLCEVLCARPAVDPLLAREQVNLAEWAMQWQNKGMLEQIIDPYLVGRIRPSSLKKFGETAEKCLAEYGVDRPTMGDVLWNLEY # ALQLQETGQQREPHEASNINGPEPPTPGSVPHIPSNNIRREGEDGNYNSDLSTTKVFSQLMTNEGR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g75 ### # start gene g76 C.avellana_Jefferson_00004 AUGUSTUS gene 97506 102158 0.05 + . g76 C.avellana_Jefferson_00004 AUGUSTUS transcript 97506 102158 0.05 + . g76.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 97506 97506 . + . transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS exon 97506 97556 . + . transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 97545 97547 . + 0 transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS intron 97557 97980 0.92 + . transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS intron 98243 101048 0.37 + . transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS intron 101117 101758 0.45 + . transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS CDS 97545 97556 0.92 + 0 transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS CDS 97981 98242 0.4 + 0 transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS exon 97981 98242 . + . transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS CDS 101049 101116 0.43 + 2 transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS exon 101049 101116 . + . transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS CDS 101759 102031 1 + 0 transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS exon 101759 102158 . + . transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 102029 102031 . + 0 transcript_id "g76.t1"; gene_id "g76"; C.avellana_Jefferson_00004 AUGUSTUS tts 102158 102158 . + . transcript_id "g76.t1"; gene_id "g76"; # protein sequence = [MLDSVYGDEEWSFGYCEQGTGVFSCPSGKNPMYTYRESVVLGETNSSIFKVNQILRELSREWPGNSYDLLAKNCNHFC # DEFCERLEVPKLPGWVNRFANAGDAAMEVAGNTALRLRQAKTEIVSASKVAYRFLLGVANNAGGSPESPGNSNRGTPRFQGTWFKNLVTTGAKPSSSS # EIENQDEDRRRQQQSPLRQNSRSSLHDV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g76 ### # start gene g77 C.avellana_Jefferson_00004 AUGUSTUS gene 103273 106301 0.01 - . g77 C.avellana_Jefferson_00004 AUGUSTUS transcript 103273 106301 0.01 - . g77.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 103273 103273 . - . transcript_id "g77.t1"; gene_id "g77"; C.avellana_Jefferson_00004 AUGUSTUS exon 103273 104340 . - . transcript_id "g77.t1"; gene_id "g77"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 103704 103706 . - 0 transcript_id "g77.t1"; gene_id "g77"; C.avellana_Jefferson_00004 AUGUSTUS intron 104341 104559 0.5 - . transcript_id "g77.t1"; gene_id "g77"; C.avellana_Jefferson_00004 AUGUSTUS CDS 103704 104340 0.53 - 1 transcript_id "g77.t1"; gene_id "g77"; C.avellana_Jefferson_00004 AUGUSTUS CDS 104560 104690 0.44 - 0 transcript_id "g77.t1"; gene_id "g77"; C.avellana_Jefferson_00004 AUGUSTUS exon 104560 104779 . - . transcript_id "g77.t1"; gene_id "g77"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 104688 104690 . - 0 transcript_id "g77.t1"; gene_id "g77"; C.avellana_Jefferson_00004 AUGUSTUS exon 106071 106301 . - . transcript_id "g77.t1"; gene_id "g77"; C.avellana_Jefferson_00004 AUGUSTUS tss 106301 106301 . - . transcript_id "g77.t1"; gene_id "g77"; # protein sequence = [MGKCKGCGKLGRMVPRDGSLSAYDSALLLSPIVSVWDCIVRKMSMGCNKVQSVMRKGKKKQVKDEVDRMKQAEKKKRR # LEKALATSAAIISELEKKKQKKKEEQQRLDEEGAAIAEAVALHVLLGEDSDDSCKIVLNKDEGFNTWDCPHNIDLFVSGSRAGFPYSDSAKHSFEGIG # WVSNAYRSGCNWGGLESGDWSFSSGPFAREDLPASYFEEADWEATGFSAGLIAAQAVSSLQIAEDAHEDTIVLNGMLRG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g77 ### # start gene g78 C.avellana_Jefferson_00004 AUGUSTUS gene 108366 110360 0.12 + . g78 C.avellana_Jefferson_00004 AUGUSTUS transcript 108366 110360 0.12 + . g78.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 108366 108366 . + . transcript_id "g78.t1"; gene_id "g78"; C.avellana_Jefferson_00004 AUGUSTUS exon 108366 110360 . + . transcript_id "g78.t1"; gene_id "g78"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 108454 108456 . + 0 transcript_id "g78.t1"; gene_id "g78"; C.avellana_Jefferson_00004 AUGUSTUS CDS 108454 109428 1 + 0 transcript_id "g78.t1"; gene_id "g78"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 109426 109428 . + 0 transcript_id "g78.t1"; gene_id "g78"; C.avellana_Jefferson_00004 AUGUSTUS tts 110360 110360 . + . transcript_id "g78.t1"; gene_id "g78"; # protein sequence = [MLSXXXXXXXXXFLHFTPPFSKPLNPKTLKPPKKPAHKIHALLQYNRKPQLAGDTPRVVVITSGKGGVGKTTTTANVG # LSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVMEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPIGFGGKALVWLVDALKARQEGSPDFI # LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLALLGVIPEDSEVIRSTNR # GYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKKRGFFSFFGG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g78 ### # start gene g79 C.avellana_Jefferson_00004 AUGUSTUS gene 115014 118071 0.03 - . g79 C.avellana_Jefferson_00004 AUGUSTUS transcript 115014 118071 0.03 - . g79.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 115014 115014 . - . transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS exon 115014 115257 . - . transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 115162 115164 . - 0 transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS intron 115258 115652 0.41 - . transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS intron 115742 116398 0.94 - . transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS intron 116470 116733 1 - . transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS intron 116940 117738 1 - . transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS CDS 115162 115257 0.35 - 0 transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS CDS 115653 115741 0.91 - 2 transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS exon 115653 115741 . - . transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS CDS 116399 116469 0.94 - 1 transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS exon 116399 116469 . - . transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS CDS 116734 116939 1 - 0 transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS exon 116734 116939 . - . transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS CDS 117739 118035 1 - 0 transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS exon 117739 118071 . - . transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 118033 118035 . - 0 transcript_id "g79.t1"; gene_id "g79"; C.avellana_Jefferson_00004 AUGUSTUS tss 118071 118071 . - . transcript_id "g79.t1"; gene_id "g79"; # protein sequence = [MNFPALFPSNSLNFLEKTKPHFQVRRSRTPLRSTTNHVGASVQVSSGTNGIRSVSKKCTDKENENRGPFRLKNGGKGW # IHFVGVGGCGLSALAMLALKQGFEVSGSDIEWSSYMDGLQEAGANLHIGHSVSNLKGIKGSRLPDAMVVSSAIPQDNVEILHANAAGVPVYKRDYWLA # RLTESYNLIAVSGSHGKSTTASMLAYVLKAMDDDVTAVVGAHVPQFPGGNIISGCGQNFVLEVSFSLDVQNGIQFV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g79 ### # start gene g80 C.avellana_Jefferson_00004 AUGUSTUS gene 122670 131441 0.01 - . g80 C.avellana_Jefferson_00004 AUGUSTUS transcript 122670 131441 0.01 - . g80.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 122670 122670 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 122670 122896 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 122847 122849 . - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 122897 123021 0.63 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 123059 123171 0.97 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 123298 123715 0.93 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 123851 123985 1 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 124058 124151 0.98 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 124258 127334 0.18 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 127493 127738 0.86 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 127892 128125 1 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 129403 129501 0.98 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 129659 129869 0.93 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 130005 130108 1 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 130181 130274 0.85 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 130334 130705 0.73 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS intron 130893 131168 0.2 - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 122847 122896 0.64 - 2 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 123022 123058 0.63 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 123022 123058 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 123172 123297 0.9 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 123172 123297 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 123716 123850 1 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 123716 123850 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 123986 124057 0.99 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 123986 124057 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 124152 124257 0.19 - 1 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 124152 124257 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 127335 127492 0.28 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 127335 127492 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 127739 127891 0.86 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 127739 127891 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 128126 129402 1 - 2 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 128126 129402 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 129502 129658 0.92 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 129502 129658 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 129870 130004 0.99 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 129870 130004 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 130109 130180 1 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 130109 130180 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 130275 130333 0.76 - 2 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 130275 130333 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 130706 130892 0.5 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 130706 130892 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS CDS 131169 131318 0.14 - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS exon 131169 131441 . - . transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 131316 131318 . - 0 transcript_id "g80.t1"; gene_id "g80"; C.avellana_Jefferson_00004 AUGUSTUS tss 131441 131441 . - . transcript_id "g80.t1"; gene_id "g80"; # protein sequence = [MAVGLSAATPKPFRLFQHSLLQKPSPLFTSLALRHSQIHKTRRKTCFTVFIFLANGGTLALTLSLCPSLKXXXXGRPW # SWWYEFSDPIHTCGREVGQEEIREXXXXEDPGRGGGEVPLSEMFGTFALSVGAAVGIEFWARWAHKALWHASLWHMHESHHRPRDGPFELNDVFAVTN # AVPAIALLAYSLFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHERFPVGPIANVPYFRKVAAAHQIPPKQNICVGSGTKTWAPVFHLHQPRLRPPH # SLLPKTWAPTPSSSSLSMPTHPANSSLSATSKNLSSLASAPPQQPHLPSKPSKASKQSYPLTMSFPTILAVLPLQQHARQLIEMSLFGVSRKRLVLKL # RCCXXXXTLQGFQAILSSHHVIPNHTHCVATVATHEAANRNEFVRCVKEKIGLEVEVLFGEEETRLVYLGVLQFLSIFGKSVLVIDIGGGSTEFVVGK # EGKVSFGASLKLGHVNLTDKFVKHGLVGQMREYVRLVIRESGVVEKIKECGFEMVVGCSGTVRAIEKAVFYGYAKSDVFENDNEVFSGECKRDWAWRF # TREELRGVVERVCEGGEKEKVRREGMFKSRSEFIVAGAVLLEEIFEVIGIKEMEVSGYALGEGVIAESLAKVYGGYDLNANARWRSVVWLATRFNSKK # RMRAAAQCAGIAKEIFEGLRKYEQVAASLDEMDFEYLEAACLLHNIGLFTGKKGYHKQTYRVIMDVGLQGYNTEEVKVCHPSTNSALSLMISIINLLS # AAPGALFQVIRGGVGTWNRIELKRSFRTCQLALXXXXVPLSEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHRPRDGPFELNDVFAVTN # AVPAIALLAYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRKVAAAHQLHHSDKFDGVPYGTGGSGRPGRVGKGDK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/15 # CDS introns: 0/14 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g80 ### # start gene g81 C.avellana_Jefferson_00004 AUGUSTUS gene 135326 146398 0.06 + . g81 C.avellana_Jefferson_00004 AUGUSTUS transcript 135326 146398 0.06 + . g81.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 135326 135326 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 135326 135391 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 135359 135361 . + 0 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 135392 135938 1 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 136269 137799 0.99 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 137924 138040 0.96 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 138216 138295 0.97 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 138367 139266 0.99 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 139967 142359 0.68 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 142496 142641 0.85 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 142763 142846 0.94 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 143025 143131 0.74 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 143203 143334 0.95 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 143613 143939 0.41 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 144267 144388 0.93 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 144510 144615 0.89 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 144794 145252 0.65 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS intron 145324 145511 1 + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 135359 135391 1 + 0 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 135939 136268 1 + 0 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 135939 136268 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 137800 137923 0.97 + 0 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 137800 137923 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 138041 138215 0.96 + 2 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 138041 138215 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 138296 138366 1 + 1 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 138296 138366 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 139267 139966 0.68 + 2 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 139267 139966 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 142360 142495 0.63 + 1 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 142360 142495 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 142642 142762 0.94 + 0 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 142642 142762 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 142847 143024 0.73 + 2 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 142847 143024 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 143132 143202 1 + 1 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 143132 143202 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 143335 143612 0.37 + 2 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 143335 143612 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 143940 144266 0.39 + 0 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 143940 144266 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 144389 144509 0.89 + 0 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 144389 144509 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 144616 144793 0.65 + 2 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 144616 144793 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 145253 145323 1 + 1 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 145253 145323 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS CDS 145512 146206 1 + 2 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS exon 145512 146398 . + . transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 146204 146206 . + 0 transcript_id "g81.t1"; gene_id "g81"; C.avellana_Jefferson_00004 AUGUSTUS tts 146398 146398 . + . transcript_id "g81.t1"; gene_id "g81"; # protein sequence = [MEPCRRFTTSHVIRTIPAILILGILSLRVAECRVKVSSTLHYSAINCRKHSAVLTEFGAVGDGKTSNTKAFKAAIDSL # SKYASDGGSQLIVPPGKWLTGSFNLTSHFTLFLQKDAVILASQDMESEWPLLPVLPSYGRGRDAADGRFSSLIFGTNLTDVVITGNNGTIDGQGAFWW # EKFRNDELKVTRPYMIELMYSNQIQISNLTLINSPSWFVHPVYSSNVLIQGLTILAPVDSPNTDGIDPDSCTNTRIEDCFIVSGDDCIAVKSGWDEYG # IKFGMPTKHLIIRRLTCISPDSATIALGSEMSGGIQDVRAEDITAIDTESGVRIKTAIGRGAFVKDIYARRMTFKTMKYVFWMTGAYSQHPDGGFDPN # AIPHIQGINYRDVVAENVTYAARLDGIANDPFTGICISNATITLTVKPKKLQWNCTNIVGVTGNVTPQPCSLLSEKEGVDCPFPEDRLPIDDIQLKTC # FATTHTLFLSKYASDGGAQLIVPPGKWLTGSFNITSSHFTLFLQKGAVILASQDESEWPQIPPLPSYGTGRDAPGGRFSSLIFGTNLTDVVITGNNGT # IDGQGATWWKKYRSGGFLNVTRPYMIELMHSNQIQISNLTLINSPSWFVHPIYSSNVLIQWLTILAPIDSPNTDGVDPDSCTNTRIEDCFIVSGDDCI # AVKSGWDQYGIKYGMPTKQLVIRRLTCISPDSATIALGSEMSGGIQDVRAEDITAIETQSGIRIKTARGRGGYVIRTISAILVLGMLSSQTAECTAAK # VSLKYRAINCRKHSAVLTDFGAVGDGKTSNTKAFKAAIQSLSKHESDGAQLIVPPGKWLTGSFNITNSHFTLFLQKGAVILASQDESEWPQIPPLPSY # GRGRDAIGGRFSSLIFGTNLTDVVITGHNGTIDGQGATWWTKFRSGGFLNVTRPYLIELMYSNQIHISNITLINSPSWNVHPVYSSDILVQQLTILAP # IDSPNTDGINPDSCTNTRIEDCFIVSGDDCIAVKSGWDQYGIKFGMPTKQLIIRRLTCISPDSATIALGSEMSGGIEDVRAEDITAIETQSGIRIKTA # KGRGAYVKNIYARRMNFKTMKYVFWMSGAYSQHADDGFDPNAIPQIQGINYRDVVAENVTYAARLDGIDNDPFTGICISNATITLTAKPKELQWNCTN # IAGVTSNVTPQPCSLLPVKKGVICPFPVNRLPIDDIQLKTCSTTGA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/16 # CDS introns: 0/15 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g81 ### # start gene g82 C.avellana_Jefferson_00004 AUGUSTUS gene 147976 150152 0.05 + . g82 C.avellana_Jefferson_00004 AUGUSTUS transcript 147976 150152 0.05 + . g82.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 147976 147976 . + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS exon 147976 148029 . + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 147997 147999 . + 0 transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS intron 148030 148347 0.42 + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS intron 148663 148760 0.95 + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS intron 148870 148960 0.91 + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS intron 149139 149219 0.88 + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS intron 149291 149418 1 + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS CDS 147997 148029 0.2 + 0 transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS CDS 148348 148662 0.87 + 0 transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS exon 148348 148662 . + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS CDS 148761 148869 0.91 + 0 transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS exon 148761 148869 . + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS CDS 148961 149138 0.83 + 2 transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS exon 148961 149138 . + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS CDS 149220 149290 0.91 + 1 transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS exon 149220 149290 . + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS CDS 149419 150113 1 + 2 transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS exon 149419 150152 . + . transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 150111 150113 . + 0 transcript_id "g82.t1"; gene_id "g82"; C.avellana_Jefferson_00004 AUGUSTUS tts 150152 150152 . + . transcript_id "g82.t1"; gene_id "g82"; # protein sequence = [MEPCLRFRTSHLIQTISAILILGVAECTVKLSSTLQYPAINCRKHSAVLTEFGAVGDGKTSNTKAFKAAIDSLSKHAS # DGGALLIVPPGKWLTGSFNLTSHFTLFLHKDALLLGSTDESEFPQLPPLPSYGTTIRRFTSLIFGTNLTDVVITGNNGTIDGQGATWWTKYPSGGLLN # VTRPCMIELMYSNQIQISNLILINSPYSFVHPVYSSDILIQGLTILAPIDSPNTHGIQPDSCTNTRIEDCFIEPGDDCIFVKSGYDQYGIRFGMPSKQ # LVIRRLTCISPDNAIISLGSEMSGGIQDVRIEDITAFNMEAGLRIKTAIGRGGFVKDIYVRRLTMKTTKYVFWISGDYNKHPDNGFDPKALPEIHGIN # YRDVVAENVNVSAKFDGITNDVFTGICISNVNITLSQTPKALQWNCSNIAGVTSNVTPKPCNLLPEQKGVVCHFPEDKLPIEHVQLKACSATTA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g82 ### # start gene g83 C.avellana_Jefferson_00004 AUGUSTUS gene 150315 154061 0.03 - . g83 C.avellana_Jefferson_00004 AUGUSTUS transcript 150315 154061 0.03 - . g83.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 150315 150315 . - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS exon 150315 150552 . - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS exon 151298 151457 . - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 151305 151307 . - 0 transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS intron 151458 151538 1 - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS intron 151749 151887 0.97 - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS intron 152012 152140 0.59 - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS intron 152303 152396 0.96 - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS intron 152517 152635 0.98 - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS intron 152738 153435 0.97 - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS CDS 151305 151457 0.99 - 0 transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS CDS 151539 151748 1 - 0 transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS exon 151539 151748 . - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS CDS 151888 152011 0.6 - 1 transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS exon 151888 152011 . - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS CDS 152141 152302 0.57 - 1 transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS exon 152141 152302 . - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS CDS 152397 152516 0.98 - 1 transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS exon 152397 152516 . - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS CDS 152636 152737 0.96 - 1 transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS exon 152636 152737 . - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS CDS 153436 153992 0.97 - 0 transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS exon 153436 154061 . - . transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 153990 153992 . - 0 transcript_id "g83.t1"; gene_id "g83"; C.avellana_Jefferson_00004 AUGUSTUS tss 154061 154061 . - . transcript_id "g83.t1"; gene_id "g83"; # protein sequence = [MSLSDSISRKLFKHTSFLGLPLWVLIILLSAFFVVLILIFISLCFICRRRRRRKSYKDNYFCLPNPIPCKPRRYDSYS # MSSLDRRLLPRNIYEAEMSHGRSSEGHTAGTTTQQHFIVTDDVESVLRYLPVAKDVWRGSKFSLKEIEMATNSLAKENLIGSGDYGVVYRGILLDNTR # VAVKKLVRGSCQAEDFIAEVEAFGQVRHKNLVKLLGYCIEGAYRMLVYEYVDNGNLYQWLHGSPEISPLTWSIRKNIIQGIAKGLAYLHEDLEPNVLH # GCLKSSNILFDQQWNPKITDFGLAKLFDPEWSHLIMETLGYVAPESPSTDAFTEETDVYSFGILVMEIVSGLIPVDSRQPQPYLIEWFKSAVANREIS # CVVDPKLPEMPSSKALKRIILVALHCVDPNINHRPKMGDVVHMLEQCDMLLNNDCRIRRETSSHDHPEESLVAANRTNKGESSKKSLPALNDVGNEST # NHEGQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/3 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g83 ### # start gene g84 C.avellana_Jefferson_00004 AUGUSTUS gene 162536 166064 0.08 + . g84 C.avellana_Jefferson_00004 AUGUSTUS transcript 162536 166064 0.08 + . g84.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 162536 162536 . + . transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS exon 162536 162777 . + . transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 162591 162593 . + 0 transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS intron 162778 163518 0.68 + . transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS intron 163614 164345 0.99 + . transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS intron 164414 165357 0.85 + . transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS intron 165550 165718 0.67 + . transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS CDS 162591 162777 0.88 + 0 transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS CDS 163519 163613 0.91 + 2 transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS exon 163519 163613 . + . transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS CDS 164346 164413 1 + 0 transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS exon 164346 164413 . + . transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS CDS 165358 165549 0.85 + 1 transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS exon 165358 165549 . + . transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS CDS 165719 165848 0.67 + 1 transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS exon 165719 166064 . + . transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 165846 165848 . + 0 transcript_id "g84.t1"; gene_id "g84"; C.avellana_Jefferson_00004 AUGUSTUS tts 166064 166064 . + . transcript_id "g84.t1"; gene_id "g84"; # protein sequence = [MATLGTPAYVITKPFNSLTCPPPTARPERKLPQLRCALSPPEWRESRRLVSLVLSHFLFVPNQESLEVDQPQYAACRS # LLRSGPAASLRVNIRAVAQYASDNGNGKTASNSVDQCLSETFTSAEPWRNLIPYFCEHXXXXYFCRALEELDSLLLRASRNDTQASLESMKGEINVAV # NALESLLQTVPSDVLDKGKAVADSYRIREDVEPETLDQEMQQLESIL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g84 ### # start gene g85 C.avellana_Jefferson_00004 AUGUSTUS gene 166677 175501 0.04 - . g85 C.avellana_Jefferson_00004 AUGUSTUS transcript 166677 175501 0.04 - . g85.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 166677 166677 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 166677 167492 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 167278 167280 . - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 167493 169179 0.18 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 169290 170189 1 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 170282 170371 0.99 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 170466 170562 1 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 170652 171022 0.99 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 171141 171212 1 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 171302 171867 0.95 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 171973 172076 1 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 172179 172282 1 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 172370 172654 0.97 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 172679 172969 0.97 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 173072 173447 1 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 173589 173718 0.99 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 173836 173928 0.97 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 174022 174287 0.97 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 174393 174480 1 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 174654 175206 0.94 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS intron 175256 175360 1 - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 167278 167492 0.22 - 2 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 169180 169289 0.96 - 1 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 169180 169289 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 170190 170281 0.99 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 170190 170281 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 170372 170465 0.99 - 1 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 170372 170465 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 170563 170651 1 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 170563 170651 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 171023 171140 0.99 - 1 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 171023 171140 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 171213 171301 1 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 171213 171301 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 171868 171972 0.95 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 171868 171972 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 172077 172178 1 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 172077 172178 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 172283 172369 1 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 172283 172369 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 172655 172678 0.97 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 172655 172678 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 172970 173071 1 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 172970 173071 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 173448 173588 1 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 173448 173588 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 173719 173835 0.96 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 173719 173835 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 173929 174021 0.97 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 173929 174021 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 174288 174392 1 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 174288 174392 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 174481 174653 0.94 - 2 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 174481 174653 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 175207 175255 1 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 175207 175255 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS CDS 175361 175393 1 - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS exon 175361 175501 . - . transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 175391 175393 . - 0 transcript_id "g85.t1"; gene_id "g85"; C.avellana_Jefferson_00004 AUGUSTUS tss 175501 175501 . - . transcript_id "g85.t1"; gene_id "g85"; # protein sequence = [MGKSSKKSSLKVDAAPAVVAPSKSAKKGKREAVDAIEKQVSAKRQKKDNGVEQTLLKKKIEVKTQKKKKEETSSSDDS # SESEKEEVKIKTKKGVVALKPPVKVSSSESSDDDSSDESSDDVKVITKKGVVAAKQPVKESSEDESSDESSDDEPASKKQTVVAKNGIAAAPAKKGKD # DSSSDSSDTDSEDEEPKTKVAASSKKVPAAATKNGPLSALKKAEDSSDSSDSDDTESDEEKDSKKGAAITAKKVQPSKKIDDSESSDSDSDEDDDVPA # TKDAAKKMDIDEDDSEDSSEESDEEPQDKKTKVPPKVGKPSVKTAQDESNSSEDEESDSEDDKKPAKKPTQDSKKGNGVEEETDEDESDEESVEEQPK # TPKKNPQTPVAPQGETTSKTLFVGNLSFSVERADVDNFFKDAGEVVDVRFASDPDGRFKGFGHVEFATAEAAQKAIKLNGQDLLGRSVKLDFARERGA # YTPQNSKEGGDSFQKGGRGQTHTAYVRGFDKSLGVDEIRGSLEQHFGSCGEITRLSVPKDYETGEVKGFAYIDFSSGDNLGAALELNGSELGGEYLTV # EEAKPRAPLLHLRLRHHLFPLLPFAQPSGNPSLCDFAISVSVVXXXXXXXXXXXXXXXXXPASSLPTVAFRSTFRPP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/19 # CDS introns: 0/18 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g85 ### # start gene g86 C.avellana_Jefferson_00004 AUGUSTUS gene 184098 189906 0.05 + . g86 C.avellana_Jefferson_00004 AUGUSTUS transcript 184098 189906 0.05 + . g86.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 184098 184098 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 184098 184195 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 184131 184133 . + 0 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 184196 184308 0.76 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 184349 184443 0.74 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 184537 184875 0.11 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 184983 187778 0.26 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 187843 188156 0.21 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 188286 188414 1 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 188490 188582 0.98 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 188637 188751 0.98 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 188790 188897 1 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 189058 189406 1 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS intron 189468 189577 0.99 + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 184131 184195 0.76 + 0 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 184309 184348 0.76 + 1 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 184309 184348 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 184444 184536 0.12 + 0 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 184444 184536 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 184876 184982 0.24 + 0 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 184876 184982 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 187779 187842 0.21 + 1 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 187779 187842 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 188157 188285 0.8 + 0 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 188157 188285 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 188415 188489 1 + 0 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 188415 188489 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 188583 188636 0.98 + 0 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 188583 188636 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 188752 188789 1 + 0 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 188752 188789 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 188898 189057 1 + 1 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 188898 189057 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 189407 189467 0.99 + 0 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 189407 189467 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS CDS 189578 189669 1 + 2 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS exon 189578 189906 . + . transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 189667 189669 . + 0 transcript_id "g86.t1"; gene_id "g86"; C.avellana_Jefferson_00004 AUGUSTUS tts 189906 189906 . + . transcript_id "g86.t1"; gene_id "g86"; # protein sequence = [MSLLSDLINLDLSDTTEKIIAEIGGSGLDLRSKARTLPGPVTDPAQLPRWNYDGSSTGQAPGEDSEVMCDAYTPAGEP # IPTNKRFDAAKVFSHHDVVAEEPWYGIEQEYTLLQKDVKWPLGWPGPYYCGVGADKALGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVG # ISAGDELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTNSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFC # WGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/12 # CDS introns: 0/11 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g86 ### # start gene g87 C.avellana_Jefferson_00004 AUGUSTUS gene 192598 196430 0.01 + . g87 C.avellana_Jefferson_00004 AUGUSTUS transcript 192598 196430 0.01 + . g87.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 192598 192598 . + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS exon 192598 192679 . + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS exon 193366 193973 . + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 193390 193392 . + 0 transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS intron 193974 194060 1 + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS intron 194186 194272 1 + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS intron 194368 194445 0.94 + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS intron 194680 195274 1 + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS intron 195366 195524 0.53 + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS CDS 193390 193973 1 + 0 transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS CDS 194061 194185 1 + 1 transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS exon 194061 194185 . + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS CDS 194273 194367 1 + 2 transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS exon 194273 194367 . + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS CDS 194446 194679 0.94 + 0 transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS exon 194446 194679 . + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS CDS 195275 195365 1 + 0 transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS exon 195275 195365 . + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS CDS 195525 195595 0.53 + 2 transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS exon 195525 196430 . + . transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 195593 195595 . + 0 transcript_id "g87.t1"; gene_id "g87"; C.avellana_Jefferson_00004 AUGUSTUS tts 196430 196430 . + . transcript_id "g87.t1"; gene_id "g87"; # protein sequence = [MYARRIKCRNQRWGLAFQSSKYLSRPNCVEHASSQSLSRTPIARGHSSHNSLIRRHLLDSITPRGLAGGSSYSSFHVR # LTTCLKSSQLRVYSSEGDGRNTSEDEHIPIKDGSNFDKGKTRQEKVSEDVRRSDAHARLGEQDQKEWLKNEKLAIESKKKESPFLTRREKFRNEFSRR # IVPWEKISVSWDMFPYHIHEHTKNILVECAASHLKHKKFTASYGSRLTSSSGRILLQSMPGTELYRERLVRALARDLQVPLLVLDSNVLAPYDFGDEC # ESDEDDAESGDECTSESEVEDEHDASNEEEWTSSGEASADVSDNDEVDVEATAEAALKKLIPYNCNLEEFAKRVSGEVESSSESSKSEAVESCDKSKQ # PLKKDLSKVGAARSANQYSVHAYGIWH] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g87 ### # start gene g88 C.avellana_Jefferson_00004 AUGUSTUS gene 208301 211373 0.05 - . g88 C.avellana_Jefferson_00004 AUGUSTUS transcript 208301 211373 0.05 - . g88.t1 C.avellana_Jefferson_00004 AUGUSTUS tts 208301 208301 . - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS exon 208301 208677 . - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 208416 208418 . - 0 transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS intron 208678 208766 0.72 - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS intron 208956 209750 0.96 - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS intron 209968 210787 0.45 - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS intron 210897 210957 0.94 - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS intron 211125 211240 0.62 - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS CDS 208416 208677 0.73 - 1 transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS CDS 208767 208955 0.96 - 1 transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS exon 208767 208955 . - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS CDS 209751 209967 0.97 - 2 transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS exon 209751 209967 . - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS CDS 210788 210896 0.57 - 0 transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS exon 210788 210896 . - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS CDS 210958 211124 0.62 - 2 transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS exon 210958 211124 . - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS CDS 211241 211307 0.94 - 0 transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS exon 211241 211373 . - . transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 211305 211307 . - 0 transcript_id "g88.t1"; gene_id "g88"; C.avellana_Jefferson_00004 AUGUSTUS tss 211373 211373 . - . transcript_id "g88.t1"; gene_id "g88"; # protein sequence = [MDRKKPNSAGKKELVSLKAEGECEVGGVASSSKAGNKVDSPALPWPEVALSEFQEGVEARAPASLDIAQMITEADTKW # EGGSLVQRNSLGSDFDVGSEDKKEGKGLQVNESLAVWVYGPTDDVERRYLWEELVGIMSWWELSWCIEGDFNVVHFPCEKSGESRQSTANVEVFGVYV # GPRTHGHPTCRSAAVHHPCTLPPPLLTSPPTPPSFPQAQPPLHMHPTRLPQINRSMTLLYMPTSLVSSLFLLLSSNPLAVDMPARFLVTFHIVMAKPT # LGRIHVQCTALYPYRGILPLGPSRSMMDKSTFVVSRSTSTLLWVSNHGPFIWPSGQTCFTRP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g88 ### # start gene g89 C.avellana_Jefferson_00004 AUGUSTUS gene 215928 223944 0.01 + . g89 C.avellana_Jefferson_00004 AUGUSTUS transcript 215928 223944 0.01 + . g89.t1 C.avellana_Jefferson_00004 AUGUSTUS tss 215928 215928 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS exon 215928 216085 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS start_codon 216002 216004 . + 0 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS intron 216086 216577 0.19 + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS intron 216755 216839 1 + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS intron 216963 218300 0.97 + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS intron 218385 219700 0.99 + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS intron 219886 220095 0.98 + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS intron 220235 220313 0.97 + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS intron 220400 220954 0.17 + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS intron 221005 223168 0.18 + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS intron 223273 223613 0.77 + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS CDS 216002 216085 0.19 + 0 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS CDS 216578 216754 0.83 + 0 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS exon 216578 216754 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS CDS 216840 216962 1 + 0 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS exon 216840 216962 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS CDS 218301 218384 0.99 + 0 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS exon 218301 218384 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS CDS 219701 219885 0.99 + 0 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS exon 219701 219885 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS CDS 220096 220234 0.98 + 1 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS exon 220096 220234 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS CDS 220314 220399 0.22 + 0 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS exon 220314 220399 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS CDS 220955 221004 0.18 + 1 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS exon 220955 221004 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS CDS 223169 223272 0.7 + 2 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS exon 223169 223272 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS CDS 223614 223727 0.91 + 0 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS exon 223614 223944 . + . transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS stop_codon 223725 223727 . + 0 transcript_id "g89.t1"; gene_id "g89"; C.avellana_Jefferson_00004 AUGUSTUS tts 223944 223944 . + . transcript_id "g89.t1"; gene_id "g89"; # protein sequence = [MPATYLQIYAWRLAWHLLTPSVYDQTVQNIAKDEYESNFISAVVPPGEIGVKFEDIGALEDVKQALNELVILPMRRPE # LFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGSFEHEATRRM # RNEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLSQENLEPDFQFDKLAYATEGYSGSDLKNLCIAASYRP # VQELLEEEKKVCAFRCYLDLKWDRCDEKFVFLSIGESAFLSTGSGGLFEGLSVELRNHFVNSHAKPKSPAVGPSVAYDATSMNELRKWNEQYGEGGSR # RKSPFGFGD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g89 ### # # ----- prediction on sequence number 5 (length = 225095, name = C.avellana_Jefferson_00005) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 5 on both strands # start gene g90 C.avellana_Jefferson_00005 AUGUSTUS gene 2966 6965 0.02 + . g90 C.avellana_Jefferson_00005 AUGUSTUS transcript 2966 6965 0.02 + . g90.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 2966 2966 . + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS exon 2966 3616 . + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 3440 3442 . + 0 transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS intron 3617 4376 0.93 + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS intron 4464 4555 1 + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS intron 4814 4927 1 + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS intron 5093 5175 1 + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS intron 5230 5339 0.95 + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS intron 5487 6047 0.85 + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS CDS 3440 3616 0.9 + 0 transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS CDS 4377 4463 0.96 + 0 transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS exon 4377 4463 . + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS CDS 4556 4813 1 + 0 transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS exon 4556 4813 . + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS CDS 4928 5092 1 + 0 transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS exon 4928 5092 . + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS CDS 5176 5229 0.95 + 0 transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS exon 5176 5229 . + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS CDS 5340 5486 0.85 + 0 transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS exon 5340 5486 . + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS CDS 6048 6425 1 + 0 transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS exon 6048 6965 . + . transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 6423 6425 . + 0 transcript_id "g90.t1"; gene_id "g90"; C.avellana_Jefferson_00005 AUGUSTUS tts 6965 6965 . + . transcript_id "g90.t1"; gene_id "g90"; # protein sequence = [MAGAQFSSRGRTRRVLAVLFCLWGLISLSCAARMSVSRQRLEVQKHLKRLNKPASKSVKSSDGDTIDCVDISQQPAFD # HPFLKDHKIQMRPNYHPEGLFDENKASAKPIERSSPITQLWHQNGRCPEGTIPIRRTKKDDVLRASSAKRYGRKKHRSIPQPRSADPDLINQSGHQHA # IAYVEGDKYYGAKATINVWEPKIQQPNEFSLSQLWILGGSFGEDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVNSEIAMG # ASISPVSAYRNSQYDISILVWKDPKEGHWWMQFGNDFVLGYWPSFLFSYLAESASMIEWGGEVVNSEADGKHTSTQMGSGHFPEEGFGKSSYFRNVQV # VDDSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYYGGPGRNPNCA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g90 ### # start gene g91 C.avellana_Jefferson_00005 AUGUSTUS gene 10646 20943 0.01 + . g91 C.avellana_Jefferson_00005 AUGUSTUS transcript 10646 20943 0.01 + . g91.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 10646 10646 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 10646 10891 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 13893 14143 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 13911 13913 . + 0 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 14144 14966 0.26 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 15074 15395 0.25 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 15471 16932 0.5 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 17116 17269 0.49 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 17385 17614 1 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 17746 17861 0.99 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 17977 18064 1 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 19089 19346 0.87 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 19458 20089 0.52 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 20149 20248 0.32 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS intron 20375 20483 0.24 + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 13911 14143 0.58 + 0 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 14967 15073 0.21 + 1 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 14967 15073 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 15396 15470 0.32 + 2 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 15396 15470 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 16933 17115 0.46 + 2 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 16933 17115 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 17270 17384 1 + 2 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 17270 17384 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 17615 17745 0.99 + 1 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 17615 17745 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 17862 17976 1 + 2 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 17862 17976 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 18065 19088 0.87 + 1 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 18065 19088 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 19347 19457 0.59 + 0 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 19347 19457 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 20090 20148 0.52 + 0 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 20090 20148 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 20249 20374 0.24 + 1 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 20249 20374 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS CDS 20484 20769 0.33 + 1 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS exon 20484 20943 . + . transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 20767 20769 . + 0 transcript_id "g91.t1"; gene_id "g91"; C.avellana_Jefferson_00005 AUGUSTUS tts 20943 20943 . + . transcript_id "g91.t1"; gene_id "g91"; # protein sequence = [MARYLAGDASPFALWFLESVCMDGCYFSSCGAYCMGMLVDCNIGSRYNWVGCNNGWYCSFVGILFDHALVEITMAKLK # ELGVLCKLDLEKAYDHVNWEFLLYLLNRCGFGEMATVVGVEDKLVLSQKLFPPTNVVDVEGAVAILLLLAVALLCAYELCAVYVTAGSRASERYSPSG # FFFGVSAIAIAINMLFICRMVFNGNGLDVDEYVRRAYKFASSDCIEVGPVACLPEPPDPNELASHLGLLYLGSLIVLLVYSILYGVTAKEANWLGAIT # SAAIIILDWNIGACLYGFKLLKSRVAALFVAGTSRVFLICFGVYYWYLGHCVSYAVVASVLLGAAVSRHLSVTNPLAARRDALQSTVIRLREGFRRKE # QNSSSSSSEGCGSSMKRSSSVEAGHLGNVIEASGRSMAQCTVDGGNWNNVVLCRTASSQEGINSDKSIDSGRPSLALRSSSCRSVVQEPEVGTSFADK # NVDHTSSLVVCSSSGLESQGCESSASANQQTLDLNLALAFQERLNDPRIASMLKRRAREGDVELTSLLQDKGLDPNFAMMLKEKSLDPTILALLQRSS # LDADRDHRDNTDITIIDSNSVDNVMPNQISLSEELRLHGLDKWLQLSRLVLHHIVGTPERAWLLFSSVFILETVIVAIFRPKTIIIINATHQQFEFGI # AVLLLSLVVCSIMAFLRSLQAEEMAMTSKPRKYGFIAWLLSTCVGLLLSFLRILLCYTTALGSLEWLTMYNITESFSNALPCRMVNHALGSLEWQPAT # RQPRGWAVPPAITSATPRSPCPPKQTMGPSSKAMHLDSAWATPTLILPSSNTKPSSRAGLPPSQLQARGWTISTHQPSKGAGSCQPHHPT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/12 # CDS introns: 0/11 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g91 ### # start gene g92 C.avellana_Jefferson_00005 AUGUSTUS gene 24116 34724 0.14 + . g92 C.avellana_Jefferson_00005 AUGUSTUS transcript 24116 34724 0.14 + . g92.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 24116 24116 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 24116 24373 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 24254 24256 . + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 24374 25457 0.87 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 25732 25841 0.98 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 25993 26136 1 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 26249 26344 0.89 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 26511 26633 0.96 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 26705 26830 0.99 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 26923 27204 1 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 27368 27480 0.76 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 27553 28515 0.94 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 28894 28985 0.99 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 29102 29212 1 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 29511 30114 1 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 30435 30639 1 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 30992 31104 1 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 31426 31505 1 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 31611 31734 0.88 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 31864 32699 1 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 33081 33179 1 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 33318 33502 0.96 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS intron 33740 33840 1 + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 24254 24373 0.89 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 25458 25731 0.93 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 25458 25731 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 25842 25992 0.98 + 2 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 25842 25992 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 26137 26248 0.9 + 1 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 26137 26248 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 26345 26510 0.96 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 26345 26510 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 26634 26704 0.99 + 2 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 26634 26704 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 26831 26922 1 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 26831 26922 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 27205 27367 0.99 + 1 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 27205 27367 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 27481 27552 0.76 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 27481 27552 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 28516 28893 0.93 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 28516 28893 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 28986 29101 1 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 28986 29101 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 29213 29510 1 + 1 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 29213 29510 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 30115 30434 0.97 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 30115 30434 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 30640 30991 1 + 1 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 30640 30991 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 31105 31425 1 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 31105 31425 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 31506 31610 0.88 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 31506 31610 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 31735 31863 1 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 31735 31863 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 32700 33080 1 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 32700 33080 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 33180 33317 1 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 33180 33317 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 33503 33739 0.96 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 33503 33739 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS CDS 33841 34206 0.87 + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS exon 33841 34724 . + . transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 34204 34206 . + 0 transcript_id "g92.t1"; gene_id "g92"; C.avellana_Jefferson_00005 AUGUSTUS tts 34724 34724 . + . transcript_id "g92.t1"; gene_id "g92"; # protein sequence = [MVACLSIAVPIWIRNGYQFWFPRVQCVGNAGNHHFPGTKEGVVLAICISVFTGSVLALGGIISAKPLDDLGYKGLTGE # QKSFSSPYASSVYLGWAMASAIALVVTGVLPIVSWFATYRFSLSSAVCVGIFSVVLVAFCGASYLEVVKSRDDEVPTKGDFLAALLPLVCIPAVLSLC # SGLHKWKDDDWRLSRGVYAFVTIGLLLLLGAISAVIVVVKPWTIGVAFLLVLLMLVLAIGAIHHWASNNFYLTRIQMLFVCFLAFLLALAAFLVGLFE # DKPFVGASVGYFSFLFLLAGRALTVLLSPPIVVYSPRVLPVYVYDAHADCGKNVSAAFLVLYGIALATEGWGVVASLKLYPPFAGAAVSAITLVVAFG # FAVSRPCLTLKTMEDAVHFLSRETVVQAIARSATKTRNALSGTYSAPQRSASSAALLVGDPTIMRDRAGNFVLPRADVMKLRDRLRNEELVAGSFFSR # IRYGRTFRHGHANDVDHRREMCAHARILALEEAIDTEWVYMWDKFGGYLLLLLGLTAKAERVQDEVRLRLFLDSIGFSDLSASKIKKWMPEDRRQFEI # IQESYIREKEMEEEILMQRREEEGRGKERRKALLEKEERKWKEIEASLISSIPNAGSREAAAMAAAVRAVGGDAVLDDSFARERVSSIARRIRTAQLA # RRALQTGVAGAVCILDDEPTTSGRTCGLIDPSVCQSQKVSFSIAVMIQPESGPVCLLGTEFQKKVCWEILVAGSEQGIEAGQVGLRLITKGDRQTTVA # KEWSISATSIADGRWHIVTMTIDADLGEATCFLDGGFDGYQSGLPLRAGNSIWEQGTDVWIGVRPPIDMDAFGRSDSEGVESKMYIMDVFLWGRCLSE # DEIAALHAAIGSADFSAIDFPEDNWQWVDSPSRIDGWDSDPADVDLYDRDDVDWDGQYSSGRKRRSDRDGVVIDVDSFARRYRKPRMETQEEINQRML # SVELAVKEALCARGERHFTDQEFPPNDQSLFVDPKNPPVKLQVVSKWMRPAEIVKESRMDYGPCLFSGAANPSDVCQGRLGDCWFLSAVAVLTEVSRI # SEVIITPEYNEEGIYTVRFCIQGEWVPVVVDDWIPCEAPSKPAFATSRKGNELWVSILEKAYAKLHGSFEALEGGLVQDALVDLTGGAGEEIDMRSAQ # AQIDLASGRLWSQLLRFKQEGFLLGAGSPSGSDVHISSSGIVQGHAYSLLQVREVDGHKLVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHIPQS # KDGIFWMSWQDFQIHFRSIYVCRIYPPEMRYSVHGQWRGYSAGGCQDYETWNKNPQFRLRAIGSDASFPIHVFITLTQGVGFSRTAAGFRNYQSSHDS # MMFYIGMRILKTRGRRAAYNIYLHESVGGTDYVNSREISCEMVLDPDPKGYTIVPTTIHPGEEAPFVLSVFTKASISLELLEYEENGSSVGSRRRQYP # WKF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/21 # CDS introns: 0/20 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g92 ### # start gene g93 C.avellana_Jefferson_00005 AUGUSTUS gene 36810 39451 0.07 - . g93 C.avellana_Jefferson_00005 AUGUSTUS transcript 36810 39451 0.07 - . g93.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 36810 36810 . - . transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS exon 36810 37211 . - . transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 37069 37071 . - 0 transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS intron 37212 37405 0.44 - . transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS intron 37621 38287 0.98 - . transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS CDS 37069 37211 0.49 - 2 transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS CDS 37406 37620 0.44 - 1 transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS exon 37406 37620 . - . transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS CDS 38288 38523 0.99 - 0 transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS exon 38288 38527 . - . transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 38521 38523 . - 0 transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS exon 39405 39451 . - . transcript_id "g93.t1"; gene_id "g93"; C.avellana_Jefferson_00005 AUGUSTUS tss 39451 39451 . - . transcript_id "g93.t1"; gene_id "g93"; # protein sequence = [MEKESKIQRGHNNNRATETDFGLQWGNRKRLRCVKVKDQSLANKSDCLGKKKITSRVDRCVVGTAEKDLVSPQAHRLN # KNSDSPLNNRKVLMASPEKEDRYYTTRGSLGFDDNGKVLMDHVKEDKPLVWPKLFVTLSSKEKEEDFMAMKGFGQSRCMAVGSVPREVRSEGEKGFKE # GIDFLWLFNDSLNAVIVAEKM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g93 ### # start gene g94 C.avellana_Jefferson_00005 AUGUSTUS gene 45224 45831 0.4 - . g94 C.avellana_Jefferson_00005 AUGUSTUS transcript 45224 45831 0.4 - . g94.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 45224 45224 . - . transcript_id "g94.t1"; gene_id "g94"; C.avellana_Jefferson_00005 AUGUSTUS exon 45224 45831 . - . transcript_id "g94.t1"; gene_id "g94"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 45372 45374 . - 0 transcript_id "g94.t1"; gene_id "g94"; C.avellana_Jefferson_00005 AUGUSTUS CDS 45372 45680 0.82 - 0 transcript_id "g94.t1"; gene_id "g94"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 45678 45680 . - 0 transcript_id "g94.t1"; gene_id "g94"; C.avellana_Jefferson_00005 AUGUSTUS tss 45831 45831 . - . transcript_id "g94.t1"; gene_id "g94"; # protein sequence = [MKSSKTCEYGEDKWVEREMNHNAVYLCGSLELTTTAQKNNPKARAERDARKVGTKMAASDVGLGAGASAAAAFCTEEM # AINATINSATKNFNFIASISLNAR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g94 ### # start gene g95 C.avellana_Jefferson_00005 AUGUSTUS gene 49089 69051 0.01 - . g95 C.avellana_Jefferson_00005 AUGUSTUS transcript 49089 69051 0.01 - . g95.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 49089 49089 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 49089 49850 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 49249 49251 . - 0 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 49851 50421 0.83 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 50794 51191 1 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 52354 53304 0.47 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 53601 54488 0.74 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 54568 54727 1 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 54816 55587 1 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 55736 55808 1 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 56077 57037 0.93 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 57567 57627 0.46 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 58010 58109 0.7 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 58528 60014 0.94 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 60285 60970 0.95 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 61218 61638 0.77 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 61699 62071 0.78 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 62402 62517 0.87 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 62597 64858 0.63 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 64939 65061 0.99 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 65140 66793 1 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 66875 66958 0.62 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 67047 67720 0.99 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 67808 67904 0.99 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 68045 68168 0.98 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS intron 68243 68893 0.71 - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 49249 49850 1 - 2 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 50422 50793 0.82 - 2 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 50422 50793 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 51192 52353 0.49 - 0 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 51192 52353 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 53305 53600 0.72 - 2 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 53305 53600 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 54489 54567 1 - 0 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 54489 54567 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 54728 54815 1 - 1 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 54728 54815 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 55588 55735 1 - 2 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 55588 55735 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 55809 56076 0.97 - 0 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 55809 56076 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 57038 57566 0.8 - 1 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 57038 57566 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 57628 58009 0.54 - 2 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 57628 58009 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 58110 58527 0.7 - 0 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 58110 58527 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 60015 60284 0.98 - 0 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 60015 60284 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 60971 61217 0.94 - 1 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 60971 61217 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 61639 61698 0.78 - 1 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 61639 61698 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 62072 62401 0.87 - 1 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 62072 62401 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 62518 62596 0.64 - 2 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 62518 62596 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 64859 64938 0.93 - 1 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 64859 64938 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 65062 65139 0.99 - 1 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 65062 65139 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 66794 66874 0.62 - 1 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 66794 66874 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 66959 67046 1 - 2 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 66959 67046 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 67721 67807 1 - 2 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 67721 67807 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 67905 68044 0.98 - 1 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 67905 68044 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 68169 68242 0.82 - 0 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 68169 68242 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS CDS 68894 68953 0.56 - 0 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS exon 68894 69051 . - . transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 68951 68953 . - 0 transcript_id "g95.t1"; gene_id "g95"; C.avellana_Jefferson_00005 AUGUSTUS tss 69051 69051 . - . transcript_id "g95.t1"; gene_id "g95"; # protein sequence = [MISLFKSKVMFMFGAEFVEQGGLHQISWFQFLPHEADLNPLPDKSLKAEQKDTATWLVLSSHLQLQKEGFLSTWTNSF # VGPWDPSQGLHNPDEKIKLWLFLPGRHSSVIETAQSAVSKLRVIASGIWLAPGDSEEVAAALSQALRNRIERSLIGLSYMRFGDVFSRYYPSQSEEVL # RRGQPAVEFIFAATEEAVFVHVIISAKHIRSLSSGDIERVLKRSSNNPGYRLPVIVSPHGIRGRLTGCCPGDLVKQVYFSSGNFKSSNGFIGLPYHVS # QNSGYQMRGQNFYVEVTLGCPRSGSDNALQSNSDSMRNLAKNHVAESPAVGRGDQKGSRDQLPVYEKTFIYPAEAVLVPVLHTSFARSSLKRFWLQNW # TGPSLPSSSFFMHCVSNMDFVEGSWNEISGIHTKHGYXXXXXXXXXXXXXXXXXSSDSDHKMTTGASELDGDADSLACRQSGLSSNDQLENDCNKLGS # KRSRAGMAESFGQVGTATNSLAQDAYKSDFSSMEVDNSAITGASNEQIGSHWDWDDDDRGNVMDIQALLSEFGDFGDFFENDALPFGEPPGTAESQAL # MFSAPDGGDVRCSPVGMTDISDQMLLPVGFPSFESFDPPPPVAQEDCLSKNQEVTNSSLSSDLVNHTPAYSTCEFDHIIKAEALMTFATEYGAVDTPT # SEFSSSIFRSPYFPKSRKAESSNSSPNSYIYDEKTSMALNSKPCPGRNDASAVIPSKKYYTHVESGKEQHEKRSVAGNNSIATSEGVAPSPFSNLNST # NAVKSSLRKFTEGNLELSHFLLSTKTVLATEVECLMFQASMCRIRHTLLSSSSLMPIGLSRSSGSTVLNQLPSEQSTMTDNISGKYEVKKKESIPVRI # AGDIGMLDGHLNAPVGVWRSVGVPKVPKPSNSPSMEVSPSLPHNTFNEEGILSFGQMQPLQELLDGMALLVQQATSSVDLTLDGDCGDGPYGWLALQE # QWKRGFSCGPFMVHAGCGGTLASCHSLDIAGVELVDPLSADVHASSVISLLQSDIKTALKSAFGILDGPLSVTDWCKGRNQSGDAGTAGDGFSAESSI # SECRESSNTVTLSVGEPMSPSQSSAGGSSCLKVSSAMDGAKADETCQRRSNQEIFSSESEQQLCTRLRPTLFVLPLPAILVGYQDDWLKTSASSLQLW # EKAPLEPYALQKPITYNVICPDIDPLTSAAADFFQQLGTVYETCKLGSHSPQSLGNQMEIDSGKWSSSGFVLLDCPQSMKMESSNASLVGSISDYFLS # LSNGWDLMSYLKTLSKVLKGLKLGPFLSTNPKEGSSGPCMNYFTVANQLRTLLVPNMQVLYVVCPFPEPIAVLQTVVESSVAVGSVILQSDRERRSIL # HSQVGKALSCSAAVDEATMSNVLVLSGFNIPKLVLHIVTVDAIFRVTSPPLNELVILKETAFTVYNKARRISRGSSNDMIQSSSLSSRSSSVLTQMSP # ISGMWKDCVGPRITGHSLPREGEIDASLRSGAWDNSWQTTRTGGLSCEPTRPGDYNLPDEIRYLFEPLFILAEPGSVEHGVSPAISGNIVSESSKPLS # DDSGGAFMQGASSAGGGDAGSCSQLDGSETDAFGSSHPKSFPSLHCCYGWTEDWRWLVCIWTDSRGELLDSHVFPFGGISSRQDTKGLQCLFVQVLQQ # GCQILQACSSSDNGSTKPRDFVITRIGSFFELEYLEWQKAINSVGGSEVKKWPLQLRRSVRDGIPASSNGTSLQQQEMGLIQERGLPSSPSPLYSPHT # KASGYIKGGLGQPAARKQLIGAHTVVDSSRGLLQWVQSISFVAISVDHSLHLVFQADSLSPGGTQGGSVMGLSGYLEGFTPVKSLGSMSASYLLIPSP # SMRFLPATPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFVVSKAVPSMRKDCRSSMKEEWPSVLSVSLIDYYGGTSIIQDKIVRGVNKQGGRSLSSE # AKDFEIETHLVLQSVAAELHALSWMTVSPAYLERRTALPFHCDMVLRLRRLLHFADKDLSRQLEK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/24 # CDS introns: 0/23 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g95 ### # start gene g96 C.avellana_Jefferson_00005 AUGUSTUS gene 69794 72911 0.04 - . g96 C.avellana_Jefferson_00005 AUGUSTUS transcript 69794 72911 0.04 - . g96.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 69794 69794 . - . transcript_id "g96.t1"; gene_id "g96"; C.avellana_Jefferson_00005 AUGUSTUS exon 69794 70163 . - . transcript_id "g96.t1"; gene_id "g96"; C.avellana_Jefferson_00005 AUGUSTUS exon 72374 72911 . - . transcript_id "g96.t1"; gene_id "g96"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 72409 72411 . - 0 transcript_id "g96.t1"; gene_id "g96"; C.avellana_Jefferson_00005 AUGUSTUS CDS 72409 72834 0.46 - 0 transcript_id "g96.t1"; gene_id "g96"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 72832 72834 . - 0 transcript_id "g96.t1"; gene_id "g96"; C.avellana_Jefferson_00005 AUGUSTUS tss 72911 72911 . - . transcript_id "g96.t1"; gene_id "g96"; # protein sequence = [MVSGILANLFPLRFTISRDDKLEMTLGKDERFLQFFQLRVSRPDKPSNDNGNYFIAVPTNLRIPKDVIFPRMAGNALS # LEQPDRSKNSRFQVDHVWKAFKMFAIWKIQSFKPFKDSNRWMDVRQTGITFKLDLASEDLGLR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/3 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g96 ### # start gene g97 C.avellana_Jefferson_00005 AUGUSTUS gene 79021 85411 0.24 - . g97 C.avellana_Jefferson_00005 AUGUSTUS transcript 79021 85411 0.24 - . g97.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 79021 79021 . - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS exon 79021 79477 . - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 79227 79229 . - 0 transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS intron 79478 80363 1 - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS intron 80698 80941 1 - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS intron 81071 81306 1 - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS intron 81448 82026 0.52 - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS intron 82159 82309 0.37 - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS intron 82481 85196 0.5 - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS CDS 79227 79477 1 - 2 transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS CDS 80364 80697 1 - 0 transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS exon 80364 80697 . - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS CDS 80942 81070 1 - 0 transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS exon 80942 81070 . - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS CDS 81307 81447 0.72 - 0 transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS exon 81307 81447 . - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS CDS 82027 82158 0.37 - 0 transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS exon 82027 82158 . - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS CDS 82310 82480 0.47 - 0 transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS exon 82310 82480 . - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS CDS 85197 85340 0.55 - 0 transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS exon 85197 85411 . - . transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 85338 85340 . - 0 transcript_id "g97.t1"; gene_id "g97"; C.avellana_Jefferson_00005 AUGUSTUS tss 85411 85411 . - . transcript_id "g97.t1"; gene_id "g97"; # protein sequence = [MVLISENITENDMAAAQTLVPLATESREDCDLERGQQDFITSDRKMDGVKMSPTNENKSQNSSELENITTGWEIQPYV # ENPIMKHFCRQSINVELISKVLKQLVTQSTSQLKQVSAWETKLGTTNVVGEISVSFKLPEYCAIDIAEVDKIIRRPMPQDGDLNNVNTQNVPQFSFAQ # RLNGWNIERRQRSNGKSCDMYYRHESSHRTFRSTVEVVNFLLYEAYPPKQQRANKSKSEGDYLEQRSQHGRGLLKRKMASPISGGSSSKSKEKMYVLS # DVCEEYTNATVEELLAAAYLNILNSSSNSSMQGGSEPEFSSDYVDPKEAREMVEEFLDTSYNNLLNHFNEKENAPQENKKGKVDEQKDKGQSGVNPIQ # EQANVAEVQTNVEEVEDNPTEVEANAGAFSSSPSAYTEQCDLINHIPHVSECELAFLLGNN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g97 ### # start gene g98 C.avellana_Jefferson_00005 AUGUSTUS gene 90906 91280 0.3 + . g98 C.avellana_Jefferson_00005 AUGUSTUS transcript 90906 91280 0.3 + . g98.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 90906 90906 . + . transcript_id "g98.t1"; gene_id "g98"; C.avellana_Jefferson_00005 AUGUSTUS exon 90906 91280 . + . transcript_id "g98.t1"; gene_id "g98"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 90959 90961 . + 0 transcript_id "g98.t1"; gene_id "g98"; C.avellana_Jefferson_00005 AUGUSTUS CDS 90959 91189 0.63 + 0 transcript_id "g98.t1"; gene_id "g98"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 91187 91189 . + 0 transcript_id "g98.t1"; gene_id "g98"; C.avellana_Jefferson_00005 AUGUSTUS tts 91280 91280 . + . transcript_id "g98.t1"; gene_id "g98"; # protein sequence = [METITTQYSSFSFTFFMKMMTILLLLLICFSSNPVEGARPLNGMMKPTPATNRVKVPPSAPNPCHPKDVEGHCLVN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g98 ### # start gene g99 C.avellana_Jefferson_00005 AUGUSTUS gene 93826 98411 0.06 + . g99 C.avellana_Jefferson_00005 AUGUSTUS transcript 93826 98411 0.06 + . g99.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 93826 93826 . + . transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS exon 93826 94120 . + . transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 93878 93880 . + 0 transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS intron 94121 95667 0.29 + . transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS intron 96161 96459 0.97 + . transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS intron 96630 97991 0.57 + . transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS CDS 93878 94120 0.26 + 0 transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS CDS 95668 96160 0.91 + 0 transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS exon 95668 96160 . + . transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS CDS 96460 96629 0.69 + 2 transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS exon 96460 96629 . + . transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS CDS 97992 98270 0.96 + 0 transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS exon 97992 98411 . + . transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 98268 98270 . + 0 transcript_id "g99.t1"; gene_id "g99"; C.avellana_Jefferson_00005 AUGUSTUS tts 98411 98411 . + . transcript_id "g99.t1"; gene_id "g99"; # protein sequence = [MFFRKMMAILLLLLICFSSNAAEGARPLNGMMKPTPSTNRVKVTPPADEGARTLNGMMKPTPSTDRGKVPPPAPNGCH # PKQRLALLGIPADCLPPGLVEFVKDDKTRIPELVSAILPTDEEMREAFREAKAGSKKASTRVKRRFRDNVEWLKWLMFEGDPAAALKHLSKMSVGQRG # VCGAVWGNNDVAYRCRTCEHDPTCAICVPCFQNGNHKHHDYSIFYTGGGCCDCGDITAWKREGFCSKHKEIGREANLGSESSGLRRCLCCTDWLVRFW # RGSPSMENMDVDSSLESSQLKHRDRILQRLALLGIPGDCLPPGLVEFVKDDKTRIPELVSAILPTDEEIREAFREAKPGSKKASTRVNRRFRDSVEWL # KWLMLAAALKHLSKMSVGQRGV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g99 ### # start gene g100 C.avellana_Jefferson_00005 AUGUSTUS gene 98666 107155 0.01 + . g100 C.avellana_Jefferson_00005 AUGUSTUS transcript 98666 107155 0.01 + . g100.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 98666 98666 . + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS exon 98666 98850 . + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 98695 98697 . + 0 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS intron 98851 99085 1 + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS intron 100315 100754 0.55 + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS intron 100926 101275 0.67 + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS intron 101520 101595 1 + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS intron 102319 103088 0.48 + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS intron 103281 103413 0.64 + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS intron 104100 106261 0.21 + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS intron 106314 106394 0.22 + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS CDS 98695 98850 0.9 + 0 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS CDS 99086 100314 0.91 + 0 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS exon 99086 100314 . + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS CDS 100755 100925 0.48 + 1 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS exon 100755 100925 . + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS CDS 101276 101519 1 + 1 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS exon 101276 101519 . + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS CDS 101596 102318 0.96 + 0 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS exon 101596 102318 . + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS CDS 103089 103280 0.63 + 0 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS exon 103089 103280 . + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS CDS 103414 104099 0.31 + 0 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS exon 103414 104099 . + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS CDS 106262 106313 0.21 + 1 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS exon 106262 106313 . + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS CDS 106395 107045 0.21 + 0 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS exon 106395 107155 . + . transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 107043 107045 . + 0 transcript_id "g100.t1"; gene_id "g100"; C.avellana_Jefferson_00005 AUGUSTUS tts 107155 107155 . + . transcript_id "g100.t1"; gene_id "g100"; # protein sequence = [MGTTNTTIILFSIRVAVAVIVXLVKEMNLLAMLLGCLGDIFFSCAGEDDRLQVAKWGNLYETTIRVLEDVRFVMSHAA # VAKYITHDQKNISKTWMRLLAFVQGMNPQKRETGLHIEEDNENIISPFALCHSIANIHSLLVDGAFSAASSEETDDDILSNTYKQDVVDADGLRHAKV # GRLSEESSACSATWRSSSLACASEVAEFKPDAISYPLIPPTFKWLMYECLRAIDNWLVDSTSGAALNELSPNTSSNPGSNFSALKETLSKIRKGKYIF # RRQASSTEDHDTSHVNSGFGMILELQNGKSKDNKLMTSGEIDTVNTCCPAWSNDSLMEGDTMDIDALRVLSLSDWPNISYNVSSQDISVHIPLHRLLS # LLLQKALRRCFGESAVPNMTSDSSANSSSTSCIDFFQHVLGGCHPFGFSAFVMEHLLRVRVFCAEVHAGMWRKNGDTALYSCEWYRSVRWSGQGIELD # LFLLQCCAALAPPDLFINRIIERFGLSNYLSLNLERSNEYVLIYLISIWYEPVLVQEMLTLIIQIVNERRFCGLTTAESLKRELIFTLAVGDATRSQL # VKSLPRGLSKFNQLQEILDTVAAYSNPSGFNQGMYSLRWTYWKELDLYHPRWNPRDLQVAEERYFRFCSVSPLTSQLPRWTKIYPPLKEMARVTTCKA # VLQIIRAVLFYAIFTDKGSESRAPHGVLLTALHLLSLALDICYQQRESSDQSCSSMDEVPILAYSVEEIWEGLNYGAGGQSLLSLLVFLMRMEKNENV # NNFFDTSSCNLSSLIASILKKFAEIDSGCMAKLQQLAPEVVNCLSQSKPSSDTNISGPASDSEKRKAKARERQAAILEKMRAEQSKFLASMDSAVDES # SKSGQVVNSSDVGDDSEQTAEVVCSLCHDPNSKDPMSFLILLQKSRLVSFVDRGPPSWDKFCRLEKEHVSAATDKVTDQSGISTSSGGSGLISSSPSA # QLVQNAVNEYSLYGQPEEVNAFVDFVKAWFPAVRDIQVPRTSNDGRERTVYSMETLEQDMYFCIRREMHDTLLHSNFTEDDNKLSTAEGSSERRKDAE # SVLLGKYIAALSRAMKGSPSASEDARKDKASVESTSKCPAYDGFGPSDGDGVHISSCGHALHQGCLDRYLASLKERYVRRIVFEGGHIVDPALGEFLC # PVCRRLANSVMPALPGDFKDGWEQSVSSTVSYSCAAGPSAASSEEISSLRIQQALALLQSAANVVGKDEILKALPLQGNGGMRSNLESVRRVFSKMYY # PNKQDKLSQSERVSHSMLMWDTLKYSIVTMEIAARCGRTHMTPNYGLNAMYEELKSSSGFILSLLLKNVQNARSKNALHVLQRFRGIQLFAESICSGK # SLGYASSTSRQGTVF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g100 ### # start gene g101 C.avellana_Jefferson_00005 AUGUSTUS gene 108696 109574 0.05 + . g101 C.avellana_Jefferson_00005 AUGUSTUS transcript 108696 109574 0.05 + . g101.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 108696 108696 . + . transcript_id "g101.t1"; gene_id "g101"; C.avellana_Jefferson_00005 AUGUSTUS exon 108696 109574 . + . transcript_id "g101.t1"; gene_id "g101"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 108729 108731 . + 0 transcript_id "g101.t1"; gene_id "g101"; C.avellana_Jefferson_00005 AUGUSTUS CDS 108729 109400 0.88 + 0 transcript_id "g101.t1"; gene_id "g101"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 109398 109400 . + 0 transcript_id "g101.t1"; gene_id "g101"; C.avellana_Jefferson_00005 AUGUSTUS tts 109574 109574 . + . transcript_id "g101.t1"; gene_id "g101"; # protein sequence = [MVAETTSQENPRAGDRIGERMEVANELTFMLVEMLLEFCKYSESLLSFVSRVIFSSVGLXXXXLMVAETTSQENPRAG # DCIGERMEVANELTFMLVEMLLDFCKYNESLLSFVSRVVFSSVGLLENLVRAERLLREDVVKKLSELLLKLLGEPLFKYEFAKVFMSYYPNVVNDAIN # EGTNHALKKYPLLSTFSVQILTVPTLTPRLVKXXXXSETARRTSFQI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g101 ### # start gene g102 C.avellana_Jefferson_00005 AUGUSTUS gene 114766 117747 0.16 + . g102 C.avellana_Jefferson_00005 AUGUSTUS transcript 114766 117747 0.16 + . g102.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 114766 114766 . + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS exon 114766 114959 . + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 114832 114834 . + 0 transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS intron 114960 115251 0.79 + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS intron 115319 115450 0.92 + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS intron 115529 115773 0.88 + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS intron 115852 116941 0.83 + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS intron 117011 117281 0.83 + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS CDS 114832 114959 0.34 + 0 transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS CDS 115252 115318 0.99 + 1 transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS exon 115252 115318 . + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS CDS 115451 115528 0.93 + 0 transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS exon 115451 115528 . + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS CDS 115774 115851 0.91 + 0 transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS exon 115774 115851 . + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS CDS 116942 117010 0.84 + 0 transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS exon 116942 117010 . + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS CDS 117282 117356 0.96 + 0 transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS exon 117282 117747 . + . transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 117354 117356 . + 0 transcript_id "g102.t1"; gene_id "g102"; C.avellana_Jefferson_00005 AUGUSTUS tts 117747 117747 . + . transcript_id "g102.t1"; gene_id "g102"; # protein sequence = [MLFKLEVLLQVLAPPILIVSVTDRVSQKFXXXXCSSSWKSCCSQSGCQAHAMVCGAGTGVFLLIRRTTILLQRSARQA # HWPSPYLDTFGKEKTTILLQRSARQSPWPSPYLDTFGEEDIDMHRGKPLYLNEERYAALTYMVASHGLDRSSKVLHQTTIGSFFTV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g102 ### # start gene g103 C.avellana_Jefferson_00005 AUGUSTUS gene 123418 127721 0.04 - . g103 C.avellana_Jefferson_00005 AUGUSTUS transcript 123418 127721 0.04 - . g103.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 123418 123418 . - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS exon 123418 124872 . - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 123681 123683 . - 0 transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS intron 124873 125383 0.99 - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS intron 125513 125792 0.94 - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS intron 125897 125989 1 - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS intron 126085 126739 0.97 - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS intron 126798 127166 0.87 - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS intron 127219 127499 1 - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS CDS 123681 124872 1 - 1 transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS CDS 125384 125512 0.94 - 1 transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS exon 125384 125512 . - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS CDS 125793 125896 1 - 0 transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS exon 125793 125896 . - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS CDS 125990 126084 1 - 2 transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS exon 125990 126084 . - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS CDS 126740 126797 0.99 - 0 transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS exon 126740 126797 . - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS CDS 127167 127218 1 - 1 transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS exon 127167 127218 . - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS CDS 127500 127645 0.97 - 0 transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS exon 127500 127721 . - . transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 127643 127645 . - 0 transcript_id "g103.t1"; gene_id "g103"; C.avellana_Jefferson_00005 AUGUSTUS tss 127721 127721 . - . transcript_id "g103.t1"; gene_id "g103"; # protein sequence = [MAEMKLEERCLENKQSTAASSSSVSEGSGSANLKSPGTCSPAPTSPSPRRATGPIRRAKGGWTAQEDETLRNAVAAFK # GKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKIIELVTRYGPTKWSLIAKSLAGRIGKQCRERWHNHLNPDIKKDAWTLDEELALMK # AHRIHGNKWAEIAKVLCGRTDNAIKNHWNSSLKKKLDFYLATGKLPPLPKNSPQNGAKDTNRSTVAKNLPLCSNKGSDSTAQSSSGTTDICKTNENSK # DQLVSSAPSRDMAASLNVIPNSSADSECEEFKAGSSNMDLSCSNSGSVRNFENSGINSEPKFENCAINSKLKIDNCGNNDEPMVEKCGTNIKIDEDKV # IGTPLSRETPIYGSLYYEPPQLESCNPLDFDVLNSSCMQHEYNSSPIVSPISFFTPPCVKGGRLSIPSPESILKMAAKSFPNTPSILRKRNTGGQKHL # HPNKIARADEESVKKVVYGSDEQRKSKNSLEKSECQDESLCESPASHGNSIIGANGEAFNASPPYRLRSKRTAVLKSVEKQLDFTFEKEKCDANTKSI # ELSTNGSSPVTEDCSHATKIGVT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g103 ### # start gene g104 C.avellana_Jefferson_00005 AUGUSTUS gene 135866 144135 0.04 + . g104 C.avellana_Jefferson_00005 AUGUSTUS transcript 135866 144135 0.04 + . g104.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 135866 135866 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 135866 136166 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 135997 135999 . + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 136167 136258 1 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 136428 136533 1 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 136928 137232 0.96 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 137439 137541 1 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 137853 137931 1 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 137999 138867 0.65 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 138911 140139 0.66 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 140265 142716 0.93 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 142799 142906 1 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 143200 143286 1 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 143334 143432 1 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 143455 143541 0.97 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 143605 143702 0.92 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS intron 143742 143844 0.61 + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 135997 136166 1 + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 136259 136427 1 + 1 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 136259 136427 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 136534 136927 0.96 + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 136534 136927 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 137233 137438 1 + 2 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 137233 137438 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 137542 137852 1 + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 137542 137852 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 137932 137998 0.97 + 1 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 137932 137998 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 138868 138910 0.65 + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 138868 138910 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 140140 140264 0.9 + 2 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 140140 140264 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 142717 142798 1 + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 142717 142798 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 142907 143199 1 + 2 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 142907 143199 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 143287 143333 1 + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 143287 143333 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 143433 143454 1 + 1 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 143433 143454 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 143542 143604 0.92 + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 143542 143604 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 143703 143741 0.61 + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 143703 143741 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS CDS 143845 143928 0.61 + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS exon 143845 144135 . + . transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 143926 143928 . + 0 transcript_id "g104.t1"; gene_id "g104"; C.avellana_Jefferson_00005 AUGUSTUS tts 144135 144135 . + . transcript_id "g104.t1"; gene_id "g104"; # protein sequence = [MNPNSISKVRVIVRVRPFLPHEISDKNNDRTPCVSVLDQDSEYGEEVAVYLKDKDTSRNECYRLDSFFGQEDNNLGRI # FYKEVSPLIPGIFHGCNATVFAYGATGSGKTYTMQGTDEQPGLMPLAMSTILPLCQSTGSTAEISYYEVYMDRCYDLLELKAKEISILDDKDGKIHLR # GLSRVPVKSMSEFYEAFSCGVQRRKVAHTDLNDVSSRSHGVLVISVSTPSGDGSVAAVTGKLNLIDLAGNEDNRRTFNEGIRLQESGKINQSLFALSN # VIYALNNNKPRVPYRESKLTRILQDSLGGTSRAIMVACLNPGEYQESVHTVSLAARSRHISNFVSSAHKLETPRDKMDMEAKLRAWLESKGKTKSAQR # FGAFNSPFMGKTPSSVSSVKKPSIFRSSVKAKASTNRGASEAKERFIIPEPVMNLFNNEGPVDACLEGVSIPNKWYQSQADDEEVLHDATPELTPSDE # PEFLDNDEDIEQGEHSHDHEDSRSQIGQVAGMSNKEEVEVAADGILSNTYLPDEASDKEENMTAAAKSVGSSPVTEKTNALQSSSRKVLSQIDTNITQ # KPLEGLSSTDQTCPDFFEPITPKKPFIETSANKLQIFGTPLDKFNAQSSNLKSYLIQEYIDFLNTASKEELLELKGIGIKRAEYIIELRETSPFKSLS # DLEKIGLSSKQVHNLFTRAARGILDRPEDSTPSCSEIY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/15 # CDS introns: 0/14 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g104 ### # start gene g105 C.avellana_Jefferson_00005 AUGUSTUS gene 144316 144763 0.46 + . g105 C.avellana_Jefferson_00005 AUGUSTUS transcript 144316 144763 0.46 + . g105.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 144316 144316 . + . transcript_id "g105.t1"; gene_id "g105"; C.avellana_Jefferson_00005 AUGUSTUS exon 144316 144763 . + . transcript_id "g105.t1"; gene_id "g105"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 144381 144383 . + 0 transcript_id "g105.t1"; gene_id "g105"; C.avellana_Jefferson_00005 AUGUSTUS CDS 144381 144593 0.88 + 0 transcript_id "g105.t1"; gene_id "g105"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 144591 144593 . + 0 transcript_id "g105.t1"; gene_id "g105"; C.avellana_Jefferson_00005 AUGUSTUS tts 144763 144763 . + . transcript_id "g105.t1"; gene_id "g105"; # protein sequence = [MGWPNHLLELPPSCKKRGVAEPTPKALGGGRLSWATPDRFEVTEATFGLAKALEDGSATKEKLNHPLACY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g105 ### # start gene g106 C.avellana_Jefferson_00005 AUGUSTUS gene 145100 146111 0.16 - . g106 C.avellana_Jefferson_00005 AUGUSTUS transcript 145100 146111 0.16 - . g106.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 145100 145100 . - . transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS exon 145100 145440 . - . transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 145298 145300 . - 0 transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS intron 145441 145552 1 - . transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS intron 145615 145957 1 - . transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS CDS 145298 145440 1 - 2 transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS CDS 145553 145614 1 - 1 transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS exon 145553 145614 . - . transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS CDS 145958 146022 0.99 - 0 transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS exon 145958 146111 . - . transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 146020 146022 . - 0 transcript_id "g106.t1"; gene_id "g106"; C.avellana_Jefferson_00005 AUGUSTUS tss 146111 146111 . - . transcript_id "g106.t1"; gene_id "g106"; # protein sequence = [MSCCGGNCGCGSGCKCGSGCGGCKMYPDMGYTEKTTTETLVLDTSKELRWRWEPRMAASADRTAPVTHALVNEREIVA # YEAETAFDFEN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g106 ### # start gene g107 C.avellana_Jefferson_00005 AUGUSTUS gene 155928 161651 0.05 - . g107 C.avellana_Jefferson_00005 AUGUSTUS transcript 155928 161651 0.05 - . g107.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 155928 155928 . - . transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS exon 155928 156601 . - . transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 156081 156083 . - 0 transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS intron 156602 157111 0.97 - . transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS intron 158781 158931 1 - . transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS intron 159018 159499 0.98 - . transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS CDS 156081 156601 0.97 - 2 transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS CDS 157112 158780 0.97 - 0 transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS exon 157112 158780 . - . transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS CDS 158932 159017 1 - 2 transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS exon 158932 159017 . - . transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS CDS 159500 159659 0.92 - 0 transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS exon 159500 159691 . - . transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 159657 159659 . - 0 transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS exon 161582 161651 . - . transcript_id "g107.t1"; gene_id "g107"; C.avellana_Jefferson_00005 AUGUSTUS tss 161651 161651 . - . transcript_id "g107.t1"; gene_id "g107"; # protein sequence = [MGKHFRDKRCAFPSESSHPGCTWNILHVIKYHHWRYAKRRYSNRRCAGGSHVAGDINLLDDTNAFSDDQMQEQNGAEM # GYCVIGGKMTQSTPAPKNSVRARIKAMISDEISKKKGKHHRSSSCPVRSQLVRRNSIHHLESSDSVPLADFVLDNGSPTSQNHEYSPAISTWDSLPLE # CCEDSVTSEKSYEECEFQEQPTENRTLVEEKLDNTKQDMLEQKLIHAKELTRDASLHTKELLNPLDMINVNKNLLLKMGLSKSGSFPLPGSSGRRGSG # ASKLKRMQEGIGFHAKEKGKFQFGSQSHKAVEFRYSGDFTNQSMPSKAEYEVDGMLNSSHKTADMHENKMAIKRFKDLKQKIRHVIKESRKERHRIAM # DAILHKIPHGRGFSNEWKKEIFNQLKDSAINRQGKASPESSYEIDHSVARMRHMRRTSSLNESLDRYCQLYETSFNREAKHTTSGRSKTEEASLPSGS # APKSLTRVHSLPELKSFIYQSEDSSDVYSSGMMTRTVVDVSVSKGSSFGEQENLDLPLDSEDRLQLDILVESKNQENLLGAGETDLVLGDEVGSPSSI # ANNEANAGLIVDDFGNSEAREITSQNEDIEEDIGPSKEPIAELEEHIPVSQTDSDSLKDTTSPVHISIAEGYEIPHFQVDAKERAEFDYVRDVLELSG # FSGNESLGTWHSDELAVDPYVYEEVEDCWENEEGDNCSHLLLFDLINEVLMEIYGRSCSYCPIPLSSLSHIRPMPAGHHVLQEVWALISWYMSLRPEG # NQSEDYVVSKDLAKSDGWMNLQFETECVGLELDDLIFDDLLEEVFWT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g107 ### # start gene g108 C.avellana_Jefferson_00005 AUGUSTUS gene 164816 167697 0.82 + . g108 C.avellana_Jefferson_00005 AUGUSTUS transcript 164816 167697 0.82 + . g108.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 164816 164816 . + . transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS exon 164816 166271 . + . transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 164904 164906 . + 0 transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS intron 166272 166352 0.99 + . transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS intron 166467 167052 0.97 + . transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS intron 167318 167415 1 + . transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS CDS 164904 166271 1 + 0 transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS CDS 166353 166466 0.97 + 0 transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS exon 166353 166466 . + . transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS CDS 167053 167317 1 + 0 transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS exon 167053 167317 . + . transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS CDS 167416 167531 1 + 2 transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS exon 167416 167697 . + . transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 167529 167531 . + 0 transcript_id "g108.t1"; gene_id "g108"; C.avellana_Jefferson_00005 AUGUSTUS tts 167697 167697 . + . transcript_id "g108.t1"; gene_id "g108"; # protein sequence = [MGNGIGKACHGFAGDGEISKRHNDVGVVLSDPLDEGLGHSFCYVRPDPPRLSYSSSNSEEDTQDRDSVATTAFRSISG # ASVSANTSTPISTCLADLIGSSFVDRAASFASSTSFASTPLQPVRRCSTCELVPGSGPMERGFMSGPMERGFVSGPIDSGPIEEAACEQLPIENIVKS # KKRRRWFNNIFKKLISSAIACGHKPVMAPVKGAVNASDSGGCIHLKDGEYFKERKSLQWAQGKAGEDRVQVVISEEHGWVFVGIYDGFNGPDATEYLI # SNLYPAVHRELMGNESQSRNFDEENEISGNGEMMDLDSNSKRKQGNSSKNKRNFESDGERSNHSEVLKSLSEALRKTEDEYLDIADKMVRNNPELALI # GSCVLVMLMKGEDVYLMNVGDSRAVLAQEAELDDLRPRKVHQDLKQINEDILSNQNFYFGVACGGLQNLIPLQLTTDHSTNVEEEVERIRNEHPDDAS # AVVNERVKGYLKVTRAFGVGFLKQPKWNDALLEIFRVNYVGSSPYITCLPSLYHLRLGPRDRFLILSSDGLYQYFTNEEAVFHVESFIASFPEGDPAQ # HLIEEVLFRAAKKFGMDFYELLDIPQGERRRYHDDVSIIIISLEGRIWRSSM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g108 ### # start gene g109 C.avellana_Jefferson_00005 AUGUSTUS gene 172282 175921 0.31 - . g109 C.avellana_Jefferson_00005 AUGUSTUS transcript 172282 175921 0.31 - . g109.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 172282 172282 . - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS exon 172282 172461 . - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 172387 172389 . - 0 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS intron 172462 172550 0.94 - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS intron 172629 173312 0.87 - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS intron 173374 174115 0.98 - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS intron 174241 174427 0.92 - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS intron 174518 175029 0.9 - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS intron 175104 175220 0.94 - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS intron 175351 175464 1 - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS intron 175548 175655 0.99 - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS CDS 172387 172461 0.94 - 0 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS CDS 172551 172628 0.98 - 0 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS exon 172551 172628 . - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS CDS 173313 173373 0.98 - 1 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS exon 173313 173373 . - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS CDS 174116 174240 0.99 - 0 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS exon 174116 174240 . - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS CDS 174428 174517 0.89 - 0 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS exon 174428 174517 . - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS CDS 175030 175103 0.92 - 2 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS exon 175030 175103 . - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS CDS 175221 175350 1 - 0 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS exon 175221 175350 . - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS CDS 175465 175547 0.99 - 2 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS exon 175465 175547 . - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS CDS 175656 175884 1 - 0 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS exon 175656 175921 . - . transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 175882 175884 . - 0 transcript_id "g109.t1"; gene_id "g109"; C.avellana_Jefferson_00005 AUGUSTUS tss 175921 175921 . - . transcript_id "g109.t1"; gene_id "g109"; # protein sequence = [MANQSLGVLTWWRKWAKKNWAIAAVGFSVAIFIFPLISNSWRGDDSNVNQPFDGSHSIDANLVDLTLLHNAKDRGALC # LDGSPAGYHFQKGFGSGSNNWLLHIEGGGWCDTISSCSSRSLNPLGSSKYMERQVPFSGILSRDPAQNPDFFSWNKVKIRYCDGASFAGHPESENGTG # LFFRGQLIWEALMDELLSLGLSSAKQALLSGCSAGGLASLIHCDDFPKFLPKDATVKCLSDAGFFLDEKDVLGNQVFGSFYRDVVQLQCLFPREIIKN # IKTPVFLVNPAYDFWQMISRYKISWYQMRQILITAGKIAD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g109 ### # start gene g110 C.avellana_Jefferson_00005 AUGUSTUS gene 178435 181891 0.06 - . g110 C.avellana_Jefferson_00005 AUGUSTUS transcript 178435 181891 0.06 - . g110.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 178435 178435 . - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS exon 178435 178807 . - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 178548 178550 . - 0 transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS intron 178808 178954 0.36 - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS intron 179098 179379 0.65 - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS intron 179585 179683 0.99 - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS intron 179822 180024 0.91 - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS intron 180305 180395 0.86 - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS intron 180766 181405 0.99 - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS intron 181495 181588 1 - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS CDS 178548 178807 0.39 - 2 transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS CDS 178955 179097 0.35 - 1 transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS exon 178955 179097 . - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS CDS 179380 179584 0.93 - 2 transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS exon 179380 179584 . - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS CDS 179684 179821 0.94 - 2 transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS exon 179684 179821 . - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS CDS 180025 180304 0.92 - 0 transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS exon 180025 180304 . - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS CDS 180396 180765 0.53 - 1 transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS exon 180396 180765 . - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS CDS 181406 181494 1 - 0 transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS exon 181406 181494 . - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS CDS 181589 181678 1 - 0 transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS exon 181589 181891 . - . transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 181676 181678 . - 0 transcript_id "g110.t1"; gene_id "g110"; C.avellana_Jefferson_00005 AUGUSTUS tss 181891 181891 . - . transcript_id "g110.t1"; gene_id "g110"; # protein sequence = [MGRIAVAVIVSLWLIPVSFLVNRIVPEPYMDEIFHAPQAQQYCKGNFRSWDPMITTPPGLYYLSLAHVASLFPGMFLI # QADSSFSEVCTTAILRSVNGVLALLCSILVYEIITHLRPTLSERKATIIAVVLALYPLHWFFTFLYYTDVASLTAVLAMYLASLKKSYWFSALVKDSA # QAFFINHLGALAVVIRQTNIIWMFFVACIGVIDATLTHERDKIEVNENEIDAAIRKTDRLTSKNNVTWGLNLRKRKFSSALDTDKHSIPSTSIFSANH # MSGLLDEVQVILLRSWHMKWKLLVSFSPFLMVLLAFLAFVRWNGSVVLGAKEAHAVSPHFAQIMYFGLVSALAVAPLHCSLGQIIDLFQSFWKRRPLS # FFQVLMAVIAGFFSVHYFSIAHPYLLADNRHYPFYLWRKVINAHWSMKYLLVPLYVYSWFSILTVLGKVQRKIWVLAFFLATAAVLVPAPLIEFRYYT # IPFYFLILHSPITDYQSWLLMGFLYLALNVLTMMLFLFRPFHWSHEPGIQRFIW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g110 ### # start gene g111 C.avellana_Jefferson_00005 AUGUSTUS gene 183094 187401 0.07 - . g111 C.avellana_Jefferson_00005 AUGUSTUS transcript 183094 187401 0.07 - . g111.t1 C.avellana_Jefferson_00005 AUGUSTUS tts 183094 183094 . - . transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS exon 183094 183445 . - . transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 183380 183382 . - 0 transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS intron 183446 183531 1 - . transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS intron 184146 185619 0.99 - . transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS intron 186014 186109 0.99 - . transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS CDS 183380 183445 1 - 0 transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS CDS 183532 184145 1 - 2 transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS exon 183532 184145 . - . transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS CDS 185620 186013 0.99 - 0 transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS exon 185620 186013 . - . transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS CDS 186110 186169 0.99 - 0 transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS exon 186110 186179 . - . transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 186167 186169 . - 0 transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS exon 187294 187401 . - . transcript_id "g111.t1"; gene_id "g111"; C.avellana_Jefferson_00005 AUGUSTUS tss 187401 187401 . - . transcript_id "g111.t1"; gene_id "g111"; # protein sequence = [MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV # SNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA # ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAA # GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIV # HRKCF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g111 ### # start gene g112 C.avellana_Jefferson_00005 AUGUSTUS gene 197733 199000 0.15 + . g112 C.avellana_Jefferson_00005 AUGUSTUS transcript 197733 199000 0.15 + . g112.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 197733 197733 . + . transcript_id "g112.t1"; gene_id "g112"; C.avellana_Jefferson_00005 AUGUSTUS exon 197733 199000 . + . transcript_id "g112.t1"; gene_id "g112"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 197995 197997 . + 0 transcript_id "g112.t1"; gene_id "g112"; C.avellana_Jefferson_00005 AUGUSTUS CDS 197995 198603 1 + 0 transcript_id "g112.t1"; gene_id "g112"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 198601 198603 . + 0 transcript_id "g112.t1"; gene_id "g112"; C.avellana_Jefferson_00005 AUGUSTUS tts 199000 199000 . + . transcript_id "g112.t1"; gene_id "g112"; # protein sequence = [MSNSEVFLIKDSKEAVEFKILATPRLIFEDESESSYDDVPELHKXXXXXXXXXXXXXDDGHCCEVKTPDEERERPSLQ # LGEVVKVVKEDDGHCCEVKTPDEERERPSLQLGEVVMVVEEDDDGFKTPTSLDHKIPVIKQCPPAPKKPKPPLKRKFPANKVRRNLPLEFSEEIESLF # PFPLLSDSNRNKKPRRDDEAERSSKL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g112 ### # start gene g113 C.avellana_Jefferson_00005 AUGUSTUS gene 202813 206945 0.03 + . g113 C.avellana_Jefferson_00005 AUGUSTUS transcript 202813 206945 0.03 + . g113.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 202813 202813 . + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS exon 202813 204572 . + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 202953 202955 . + 0 transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS intron 204573 204714 0.72 + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS intron 204806 204988 0.67 + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS intron 205147 205259 0.98 + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS intron 205312 205383 0.96 + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS intron 205464 205545 0.96 + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS intron 205640 205714 1 + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS CDS 202953 204572 0.94 + 0 transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS CDS 204715 204805 0.72 + 0 transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS exon 204715 204805 . + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS CDS 204989 205146 0.67 + 2 transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS exon 204989 205146 . + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS CDS 205260 205311 0.98 + 0 transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS exon 205260 205311 . + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS CDS 205384 205463 0.96 + 2 transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS exon 205384 205463 . + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS CDS 205546 205639 0.98 + 0 transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS exon 205546 205639 . + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS CDS 205715 206418 1 + 2 transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS exon 205715 206945 . + . transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 206416 206418 . + 0 transcript_id "g113.t1"; gene_id "g113"; C.avellana_Jefferson_00005 AUGUSTUS tts 206945 206945 . + . transcript_id "g113.t1"; gene_id "g113"; # protein sequence = [MERKRTLTMNWDGLRDDDDADDRFYESNDRVSSAISLDLASSSSEEDDDSVDFEESRVSFTSAASSAHSAKSRSSSSP # PPDYDVWISAPGSINERRKRLLRGMGLDNNKKDFISFKRIVSNRSQSQRLTSAPTTSPTKEPKTESPSNSNSNSPSPSQLPLVLVRSRSDSDIETFSI # SRRRKVELIGAVSKQRLTRTYSMILAPHARVFPPYADSIRVWPKGSESATGTGRSIRGALSKTRFGAFFLIKNLDTGTEFIVSEYDEDGMWNRLSDLQ # TGRKLTMEEFEKCVGYSPVVKELMRREKVSSNLMNGIDESAIERKVSANSYFSKSLRMSKRGGAALLKNVRGIANSMSGGLIGEKEREFSQLPFPVLL # EQRLGKNSSEWVKVRQSGKTYKELSALHLCQEIQAHEGSIWTIKFSHDARFLASAGEDRVVHVWEVQECEIMSLRPIEEGGAMTQNMSPIHPSLCAAS # PDNRPSPALGEVTPLPSEKKRKGKSATRKWNSIPDYVHVPETVFSLSERPVCSFQGHADDVLDLSWSKSQLLLSSSMDKTVRLWDLESKSCLKLFAHN # DYVTCIQFNPVDDNYFISGSLDAKVRLWSIPDRHVVDWIDFHEMVTAASYTPDGQGAIIGSHKGIIRKYNTEDCKLDQISQIDIQTKKKSHAKKITGF # QFAPGNPSEVLVTSADSRIRILDGSDITHKFKGFRNTSSQIAASFSVDGRYIISASEDSHVYIWKREEPRNAGNGKGKNLVTVQQQEHFQCKDVSVAI # PWPGTIKGDPPPMPVHSKRHSKTSNSPLPSASASPIREDNSTNSKRHLPPLPKKGSTAQESVSTPTEEELALVSRTESGIGESFNSVSASVRVGDSFS # ISAAANPSSSWSSSWSLFDAGNTHVSHGIQPTSWGLVIVTAGLGGEIRAYQNFGLPRRIGRQTSLFGGNT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g113 ### # start gene g114 C.avellana_Jefferson_00005 AUGUSTUS gene 215363 218385 0.01 + . g114 C.avellana_Jefferson_00005 AUGUSTUS transcript 215363 218385 0.01 + . g114.t1 C.avellana_Jefferson_00005 AUGUSTUS tss 215363 215363 . + . transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS exon 215363 215849 . + . transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS start_codon 215393 215395 . + 0 transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS intron 215850 216840 0.44 + . transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS intron 216895 216971 0.48 + . transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS intron 217571 217952 0.15 + . transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS CDS 215393 215849 0.45 + 0 transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS CDS 216841 216894 0.85 + 2 transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS exon 216841 216894 . + . transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS CDS 216972 217570 0.29 + 2 transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS exon 216972 217570 . + . transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS CDS 217953 218225 0.17 + 0 transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS exon 217953 218385 . + . transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS stop_codon 218223 218225 . + 0 transcript_id "g114.t1"; gene_id "g114"; C.avellana_Jefferson_00005 AUGUSTUS tts 218385 218385 . + . transcript_id "g114.t1"; gene_id "g114"; # protein sequence = [MEGADQKPHAVCVATPSQSHIKAMLKFSKLLHRKGFHITFVNTEFNHQRFLRSRGSNSLDGIPDFRFVTIPDSLPPSD # PNATQDVVALCDSIMKNFLAPFSDLLRKLHNTENNPPVTCIVSDGFMPFTITAAHELGIPIAMLFTISACTLMAYESYLTNGYLDIIIDWIPVIDWIP # GMRDIRLRDLPSLIQTTDPNDVMFKFIVEAVERAPKASAIIVQTFDALEHEVLDALYPMFPRLYVIGPLQLLLDHSHNDHLKSIGYNLWVEETECLHW # LNSKAPNSVLYVNFGSITVMTPQQLTEFGWGLANSKHSFLWVIRPDLVIGESAIMPPEFHVETKEXXXXQTTDPNDVMFKFIVEALERAPKAAAIICD # CRSANALLAXXXXTNSKYTCNEWDIGMEIRSCANREEVEKIVRELMEGDKGKKMKKKAMEWKKLAKEATGPHGSSSINLNNLVNEVLL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g114 ### # # ----- prediction on sequence number 6 (length = 182652, name = C.avellana_Jefferson_00006) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 6 on both strands # start gene g115 C.avellana_Jefferson_00006 AUGUSTUS gene 776 1388 0.21 + . g115 C.avellana_Jefferson_00006 AUGUSTUS transcript 776 1388 0.21 + . g115.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 776 776 . + . transcript_id "g115.t1"; gene_id "g115"; C.avellana_Jefferson_00006 AUGUSTUS exon 776 1388 . + . transcript_id "g115.t1"; gene_id "g115"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 879 881 . + 0 transcript_id "g115.t1"; gene_id "g115"; C.avellana_Jefferson_00006 AUGUSTUS CDS 879 1217 0.95 + 0 transcript_id "g115.t1"; gene_id "g115"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 1215 1217 . + 0 transcript_id "g115.t1"; gene_id "g115"; C.avellana_Jefferson_00006 AUGUSTUS tts 1388 1388 . + . transcript_id "g115.t1"; gene_id "g115"; # protein sequence = [MNFRSLEEFWAFYVNQHSKPSTRRWHFVGTLTGIFFLLCSVVFSWWFLFFVPFFGYGLAWYSHFFVEGNVPATFGHPF # WSLLCDFKMFGLMLTGKMDKEIKRLGKRPMLQIF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g115 ### # start gene g116 C.avellana_Jefferson_00006 AUGUSTUS gene 2881 10101 0.05 - . g116 C.avellana_Jefferson_00006 AUGUSTUS transcript 2881 10101 0.05 - . g116.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 2881 2881 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 2881 3247 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 2930 2932 . - 0 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 3248 3357 1 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 3541 3631 1 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 3750 3881 1 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 4166 5060 0.98 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 5243 6216 0.87 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 6474 7561 0.96 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 7633 7735 1 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 8356 8563 1 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 8719 8822 0.85 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 8941 9175 0.92 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 9259 9489 0.96 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS intron 9601 9753 0.93 - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 2930 3247 0.99 - 0 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 3358 3540 1 - 0 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 3358 3540 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 3632 3749 1 - 1 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 3632 3749 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 3882 4165 1 - 0 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 3882 4165 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 5061 5242 0.89 - 2 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 5061 5242 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 6217 6473 0.88 - 1 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 6217 6473 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 7562 7632 0.97 - 0 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 7562 7632 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 7736 8355 1 - 2 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 7736 8355 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 8564 8718 0.85 - 1 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 8564 8718 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 8823 8940 0.85 - 2 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 8823 8940 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 9176 9258 0.98 - 1 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 9176 9258 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 9490 9600 0.93 - 1 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 9490 9600 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS CDS 9754 9896 0.99 - 0 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS exon 9754 10101 . - . transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 9894 9896 . - 0 transcript_id "g116.t1"; gene_id "g116"; C.avellana_Jefferson_00006 AUGUSTUS tss 10101 10101 . - . transcript_id "g116.t1"; gene_id "g116"; # protein sequence = [MRSSASTRAFLICLILCSSLNFINGEEPKKNKFRDREASDDALGYPDIDEDALLNTQCPRNLELRWQTEVSSSIYATP # LIADINSDGKLDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMADKIEIPRRRVNKNWYVG # LDSDPVDRSHPDVHDELLVVEAAEKMSQKNGSTPELNTSVTTSAESKLGMANTSNSENESKSNGSQISIPELNTSVTKSAESHVNMANVSNQENEQKM # NESRIQSNIKLPTSEDNSSVNTGSGGTINAQNGTNTGRRLLEDNNSKESQDGGSKSKENSNEELHVATVENDKGLEADADSSFELFRESDELADEYSY # DYDDYVDESLWGDEGWTERKHEKVEDYVNIDAHILCTPVIADIDKDGVSEMVVAVSYFFDHEYYADSEHLKDLGGIDIEKYVAGAIVVINLDSKQIKW # TADLDLSTDSGKFRAYIYSSPTVVDLDGDGYLDILIGTSFGLFYVLDHHGKVREKFPLEMAEIQGAVIAADINDDGKIELVTTDVHGNVAAWNTKGEE # IWEAHIKSLVPQGPTIGDVDGDGHTDVVVPTISGNIYVLSGKDGSLVRPYPYRTHGRVMNQVLLVDLNKRGEKKKGLTLVTTSFDGYLYLIDGPTSCA # DVVDIGETSYSMVLAENVDGGDDLDLIVTTMNGNVFCFSTPVPHHPLKAWKSPYQGRNNVAIRYNREGIFVPHPSRAFRDEEGKNFFVEFEIVDRYRV # PSGSQAPYNVTATLLVPGNYQGERRIKQTQIFDRPGKYRMKLPTVGVRTTGTVLVEMVDKNGLYFSDDFSLTFHMYYYKLLKWLIVLPMLGMFGVLVI # LRPQEAVPLPSFSRNTDL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/13 # CDS introns: 0/12 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g116 ### # start gene g117 C.avellana_Jefferson_00006 AUGUSTUS gene 17306 19851 0.43 + . g117 C.avellana_Jefferson_00006 AUGUSTUS transcript 17306 19851 0.43 + . g117.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 17306 17306 . + . transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS exon 17306 17620 . + . transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 17467 17469 . + 0 transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS intron 17621 18463 0.63 + . transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS intron 18811 18896 0.95 + . transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS CDS 17467 17620 0.58 + 0 transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS CDS 18464 18810 0.88 + 2 transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS exon 18464 18810 . + . transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS CDS 18897 19559 0.97 + 0 transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS exon 18897 19851 . + . transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 19557 19559 . + 0 transcript_id "g117.t1"; gene_id "g117"; C.avellana_Jefferson_00006 AUGUSTUS tts 19851 19851 . + . transcript_id "g117.t1"; gene_id "g117"; # protein sequence = [MWHNNNAALTVANCPCMPQNRNSILQMIRVKKKTEQKRTSTINCNKIALLIFSVAKRIEKLQRNFLWGRLGEEFKYHL # VKSSKVCTPIKEGRLGIRNLMVFNHALLGKWSWHYRSERDAWWRVVVDAKFGSLWGGWCSMELGGTFGVGLRKNIRKGWDTFQGFMSFEYCLCEGRLS # CGSFGGAGGSNQWNISFSRRAHDWEMDVFXXXXVWHTQAPSRASFFVWSAALGKILTLDNLRKRHVIVMNRCCMCXXXXQVLHSARVRRGCEDRLCWI # SSKRGRFKVKLIFASLACTEGRRFPWKSVWRTQAPSRASFFVWLAALGKILTLDNLGNRHVIVTNKCCMCKRNEETVDLLLHCEVAYALWCAFFGRFG # LSWVMPRRVSDLLAC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g117 ### # start gene g118 C.avellana_Jefferson_00006 AUGUSTUS gene 22073 25991 0.01 - . g118 C.avellana_Jefferson_00006 AUGUSTUS transcript 22073 25991 0.01 - . g118.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 22073 22073 . - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS exon 22073 23142 . - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 22804 22806 . - 0 transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS intron 23143 23502 0.86 - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS intron 23710 23802 0.91 - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS intron 23935 24991 0.55 - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS intron 25076 25419 0.86 - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS intron 25572 25765 0.64 - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS CDS 22804 23142 0.86 - 0 transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS CDS 23503 23709 1 - 0 transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS exon 23503 23709 . - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS CDS 23803 23934 0.9 - 0 transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS exon 23803 23934 . - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS CDS 24992 25075 0.89 - 0 transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS exon 24992 25075 . - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS CDS 25420 25571 0.74 - 2 transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS exon 25420 25571 . - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS CDS 25766 25895 0.59 - 0 transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS exon 25766 25991 . - . transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 25893 25895 . - 0 transcript_id "g118.t1"; gene_id "g118"; C.avellana_Jefferson_00006 AUGUSTUS tss 25991 25991 . - . transcript_id "g118.t1"; gene_id "g118"; # protein sequence = [MVCNLITIKWYFYSWRGKEHFDRQHLLYEMYGHFSFNHNPGWQGWLDCPAFGQEICGMIPSKVPLSEAYNDAVVPGKR # YSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPASDLKKEGIKHVKVSQFLFRQKHSKKFILVHCTHGCNRTGYMIVNYIMRSHPTSVTQAVKMFAEARP # PGIYKPDYIDALYTFYHERKPEMVVCPPTPEWKRSSGLDLNGEALPDDDDDGVSAAPLQGDSSTDCSQGLISSSPYSFLFATPKKVCSQKWQIEWMKV # KIKDCEELKDEDRLELLMNVEDDFRWENKVAREAGPLEGDEEEDRKVAWLNEVKEDLSITVAWPGTKGKTITL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g118 ### # start gene g119 C.avellana_Jefferson_00006 AUGUSTUS gene 28066 29374 0.05 + . g119 C.avellana_Jefferson_00006 AUGUSTUS transcript 28066 29374 0.05 + . g119.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 28066 28066 . + . transcript_id "g119.t1"; gene_id "g119"; C.avellana_Jefferson_00006 AUGUSTUS exon 28066 28148 . + . transcript_id "g119.t1"; gene_id "g119"; C.avellana_Jefferson_00006 AUGUSTUS exon 29073 29374 . + . transcript_id "g119.t1"; gene_id "g119"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 29122 29124 . + 0 transcript_id "g119.t1"; gene_id "g119"; C.avellana_Jefferson_00006 AUGUSTUS CDS 29122 29313 0.45 + 0 transcript_id "g119.t1"; gene_id "g119"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 29311 29313 . + 0 transcript_id "g119.t1"; gene_id "g119"; C.avellana_Jefferson_00006 AUGUSTUS tts 29374 29374 . + . transcript_id "g119.t1"; gene_id "g119"; # protein sequence = [MSSNVGGVRHRVVAQVTWAFGGGTAVRQWHRWRSVLGSAMVVGFFTSRVVRDKKEVRVNGEGF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g119 ### # start gene g120 C.avellana_Jefferson_00006 AUGUSTUS gene 37186 38453 0.16 + . g120 C.avellana_Jefferson_00006 AUGUSTUS transcript 37186 38453 0.16 + . g120.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 37186 37186 . + . transcript_id "g120.t1"; gene_id "g120"; C.avellana_Jefferson_00006 AUGUSTUS exon 37186 38453 . + . transcript_id "g120.t1"; gene_id "g120"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 37374 37376 . + 0 transcript_id "g120.t1"; gene_id "g120"; C.avellana_Jefferson_00006 AUGUSTUS CDS 37374 38156 1 + 0 transcript_id "g120.t1"; gene_id "g120"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 38154 38156 . + 0 transcript_id "g120.t1"; gene_id "g120"; C.avellana_Jefferson_00006 AUGUSTUS tts 38453 38453 . + . transcript_id "g120.t1"; gene_id "g120"; # protein sequence = [MASDQTLFHHSQLALFLIGPPTFISCLFLQAPYGKHHRPGWGPTIYPPLAWFLMESPTLWLTLLIFPYGHHSSNPKSL # ILISPFLFHYFHRTCIYPLRLHRNTARRNGAGADFPVAVAVMAFGFNVLNAYLQARWVSEYKDYEGDGWFWWRFFGGLVVFWGGMAVNMWADRVLVGL # KKESGGYKVPRGGWFELVSCPNYLGEMVEWLGWAVMTWSWAGLGFFLYTCANLVPRARAHHRWYLEKFGEDYPKARKVVIPFLY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g120 ### # start gene g121 C.avellana_Jefferson_00006 AUGUSTUS gene 39518 46181 0.04 - . g121 C.avellana_Jefferson_00006 AUGUSTUS transcript 39518 46181 0.04 - . g121.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 39518 39518 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS exon 39518 40974 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 39805 39807 . - 0 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS intron 40975 41058 0.89 - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS intron 41137 41592 0.87 - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS intron 41662 41738 1 - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS intron 41791 43479 0.97 - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS intron 43635 43714 1 - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS intron 43830 44078 1 - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS intron 44240 44374 0.94 - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS intron 44483 45090 0.97 - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS intron 45166 45268 1 - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS CDS 39805 40974 0.97 - 0 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS CDS 41059 41136 0.89 - 0 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS exon 41059 41136 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS CDS 41593 41661 0.94 - 0 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS exon 41593 41661 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS CDS 41739 41790 0.98 - 1 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS exon 41739 41790 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS CDS 43480 43634 1 - 0 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS exon 43480 43634 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS CDS 43715 43829 1 - 1 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS exon 43715 43829 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS CDS 44079 44239 0.98 - 0 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS exon 44079 44239 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS CDS 44375 44482 0.96 - 0 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS exon 44375 44482 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS CDS 45091 45165 1 - 0 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS exon 45091 45165 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS CDS 45269 45592 1 - 0 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS exon 45269 46181 . - . transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 45590 45592 . - 0 transcript_id "g121.t1"; gene_id "g121"; C.avellana_Jefferson_00006 AUGUSTUS tss 46181 46181 . - . transcript_id "g121.t1"; gene_id "g121"; # protein sequence = [MASISHSAVAFGGASASDLLGSSSNGVSGVPLRTLGRARLGTRRDLAVVAKMRKVKKLDHPWPDNADPNVKGGVLTHL # SHFKPLNVKPKPVTLEFERPLIDLEKKIIDVRKMANETGLDFSDQILSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFSITEKFVELHGD # RSGYDDPAIVTGIGTIDGRRYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAFADLKSEELGQGEAIAHNLRTMFG # LKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKTAKAAPKAAERLKITAPELCKLQIADGIIPEPLGGAHADPSWTSQRIKK # AINESMDELMKMDTPELLKHRMLKFRKIGGFQEGLPVDPKKKINMKRKEEPIWKTSGLNIEDEVKKLMQQRLDAKEPSVTSPLSGMDEMMAKLKREVD # REFSDAAKAIGLKDRLTTLRGEFSKVNSQDQLVHPALKDKFEKLRDELNQGLSAAPNYESLKYKLDMLKELSKSKSLAEKSNKGATLKQEINKKFAEV # IDRPDIKEKYRALKAEIENVGVSTLQDLDHELKEKIVKVKKEIELELANALKSLGLDVEVVKSKAKELSEQTSFSDVKVKIEELNEEIKEGIENVVKS # SDLKEKIELLKLEVAKAGKTPDVVSKNRIAALEQQIKQSLAEALDSSNLKEKHEKLKAEISKTIESSGGLDGRLKRQYPNEDGSTYDEPRVEMNVGAN # RTFA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g121 ### # start gene g122 C.avellana_Jefferson_00006 AUGUSTUS gene 48757 49491 0.26 - . g122 C.avellana_Jefferson_00006 AUGUSTUS transcript 48757 49491 0.26 - . g122.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 48757 48757 . - . transcript_id "g122.t1"; gene_id "g122"; C.avellana_Jefferson_00006 AUGUSTUS exon 48757 49491 . - . transcript_id "g122.t1"; gene_id "g122"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 48911 48913 . - 0 transcript_id "g122.t1"; gene_id "g122"; C.avellana_Jefferson_00006 AUGUSTUS CDS 48911 49432 0.87 - 0 transcript_id "g122.t1"; gene_id "g122"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 49430 49432 . - 0 transcript_id "g122.t1"; gene_id "g122"; C.avellana_Jefferson_00006 AUGUSTUS tss 49491 49491 . - . transcript_id "g122.t1"; gene_id "g122"; # protein sequence = [MASTCKIVLVVVAMFVGLIAFVSGDAALINSVCSKTGNPVYCHKCYNMYSRSSHEDVKALGRTSLDCASLQSITVMGL # VDKLVVNATNKARKNSYVDCALKLSYGDGQITGALKSWQNARYAVASNQMLLALNAARQCSTKQQKFRLSSALGNELRTLQGFCEAANGVLKQIH] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g122 ### # start gene g123 C.avellana_Jefferson_00006 AUGUSTUS gene 51364 52151 0.3 - . g123 C.avellana_Jefferson_00006 AUGUSTUS transcript 51364 52151 0.3 - . g123.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 51364 51364 . - . transcript_id "g123.t1"; gene_id "g123"; C.avellana_Jefferson_00006 AUGUSTUS exon 51364 52151 . - . transcript_id "g123.t1"; gene_id "g123"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 51570 51572 . - 0 transcript_id "g123.t1"; gene_id "g123"; C.avellana_Jefferson_00006 AUGUSTUS CDS 51570 52091 0.91 - 0 transcript_id "g123.t1"; gene_id "g123"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 52089 52091 . - 0 transcript_id "g123.t1"; gene_id "g123"; C.avellana_Jefferson_00006 AUGUSTUS tss 52151 52151 . - . transcript_id "g123.t1"; gene_id "g123"; # protein sequence = [MASTCKFVLVVVAVFVGLIAFVSGDAALINNVCSKTRNPVYCHKCYNMYSRSSHEDVKALGRTSLDCASLESITVMGL # VDKFVVNATNKAMKNSYVDCALKLHSGDDQITGALKNWQNARYVVASNQMLLALNAAHQCSTQLQKFRLSPALANELRTLQGFCEAANGVLKQIH] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g123 ### # start gene g124 C.avellana_Jefferson_00006 AUGUSTUS gene 52616 57379 0.05 + . g124 C.avellana_Jefferson_00006 AUGUSTUS transcript 52616 57379 0.05 + . g124.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 52616 52616 . + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS exon 52616 52914 . + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 52751 52753 . + 0 transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS intron 52915 53408 0.98 + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS intron 53497 54408 0.47 + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS intron 54473 55500 0.46 + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS intron 55607 55775 0.74 + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS intron 55831 56334 0.7 + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS intron 56389 57043 0.75 + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS CDS 52751 52914 0.68 + 0 transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS CDS 53409 53496 0.91 + 1 transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS exon 53409 53496 . + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS CDS 54409 54472 0.47 + 0 transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS exon 54409 54472 . + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS CDS 55501 55606 0.7 + 2 transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS exon 55501 55606 . + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS CDS 55776 55830 0.75 + 1 transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS exon 55776 55830 . + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS CDS 56335 56388 0.74 + 0 transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS exon 56335 56388 . + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS CDS 57044 57187 0.97 + 0 transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS exon 57044 57379 . + . transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 57185 57187 . + 0 transcript_id "g124.t1"; gene_id "g124"; C.avellana_Jefferson_00006 AUGUSTUS tts 57379 57379 . + . transcript_id "g124.t1"; gene_id "g124"; # protein sequence = [MYAEVVLEQLKHGIAKFELVSVPVPSISTSNSRTCPTAFLGYNSHRFFARIGPSLGGGSPAMRKLERYSVQKVTGDGR # CLFRALVKGMAFNKGISLNPREERENADDLRMAVKEVICDNDKERRRYEEALIAITVDESLRRYCQRIERPDFWGGESELLVLSKLCRQPITVYIPEH # EHTKGGWGAGFIPIAEYGAEFDKGSRKDKARKVVRLLYSGKNHYDLLV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g124 ### # start gene g125 C.avellana_Jefferson_00006 AUGUSTUS gene 58966 68455 0.05 + . g125 C.avellana_Jefferson_00006 AUGUSTUS transcript 58966 68455 0.05 + . g125.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 58966 58966 . + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS exon 58966 59331 . + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 59089 59091 . + 0 transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS intron 59332 63325 0.83 + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS intron 63860 65946 0.36 + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS intron 66056 66333 0.25 + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS intron 66515 67662 0.95 + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS intron 67875 68030 0.91 + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS CDS 59089 59331 0.92 + 0 transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS CDS 63326 63859 0.99 + 0 transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS exon 63326 63859 . + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS CDS 65947 66055 0.34 + 0 transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS exon 65947 66055 . + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS CDS 66334 66514 0.52 + 2 transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS exon 66334 66514 . + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS CDS 67663 67874 0.96 + 1 transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS exon 67663 67874 . + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS CDS 68031 68200 0.9 + 2 transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS exon 68031 68455 . + . transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 68198 68200 . + 0 transcript_id "g125.t1"; gene_id "g125"; C.avellana_Jefferson_00006 AUGUSTUS tts 68455 68455 . + . transcript_id "g125.t1"; gene_id "g125"; # protein sequence = [MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAAVASDLDSKERQVMIQGGASSGDFLSAESHNVSLDGDF # SIQVLQKALEVWDLQVIPFDSPVAEHAQVDPELENAFICHLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLSAYLDSLKGFGWSIFLVRGNFPKEC # PMSSSEASNGYGQWLSPEDAERITKSCNPTQAPPQSINQSQQPSDPFLLSRESEMFSEMEDEDLKAAIAASLIDSLPAPAAATISAGFKFLFSVPFQM # GSSDRLFNRQRSVHEILGGGLVADVILWKRKNVTVRILLVTLAVWLVFERSGYTLLSLVSSVFLLLAAILFLWAKSAAILNRPAPPLPELHLSEEMVN # EAATFIRLRVNTLLSVSHDIALGKDSRLFFKVAAYLWLIYFLGGLTDFITLGYTCFVVILTIPALYDRFEDHIDKCVIGAYKKLQLLYVKLDGEYISR # LQKWILEQKKLS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g125 ### # start gene g126 C.avellana_Jefferson_00006 AUGUSTUS gene 69237 70661 0.02 - . g126 C.avellana_Jefferson_00006 AUGUSTUS transcript 69237 70661 0.02 - . g126.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 69237 69237 . - . transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS exon 69237 69930 . - . transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 69436 69438 . - 0 transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS intron 69931 70016 1 - . transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS intron 70185 70352 0.66 - . transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS CDS 69436 69930 1 - 0 transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS CDS 70017 70184 0.69 - 0 transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS exon 70017 70184 . - . transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS CDS 70353 70541 0.62 - 0 transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS exon 70353 70661 . - . transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 70539 70541 . - 0 transcript_id "g126.t1"; gene_id "g126"; C.avellana_Jefferson_00006 AUGUSTUS tss 70661 70661 . - . transcript_id "g126.t1"; gene_id "g126"; # protein sequence = [MPVSLILLIAWFPAALSMVFISTIRTIEFVRKPTNELRVFYHFLYASIVLAMFLMPMTLIPKLPTEVTSTNQEQNPET # SGFANMSILFIATLCGVGSSSTAIDNLGHIGDQSLGYPYSTIQNPPTPYVDFDAAFGVRWPPAHCHPGPWICLCGICYDWVLPWCTSNIALCHNFGAF # QPHYSILFNCAQLATPIGSYILNVKVAGLLYDTQALKQLAKKGIDRSSVKQLTCIGYECCRLPFIIVAAVTFFGALISLILVARTREFYKSDVYKNYS # REASTTETP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g126 ### # start gene g127 C.avellana_Jefferson_00006 AUGUSTUS gene 72491 76111 0.09 - . g127 C.avellana_Jefferson_00006 AUGUSTUS transcript 72491 76111 0.09 - . g127.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 72491 72491 . - . transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS exon 72491 73876 . - . transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 72745 72747 . - 0 transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS intron 73877 74757 0.61 - . transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS intron 74817 75742 1 - . transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS CDS 72745 73876 0.61 - 1 transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS CDS 74758 74816 0.78 - 0 transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS exon 74758 74816 . - . transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS CDS 75743 75994 1 - 0 transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS exon 75743 76111 . - . transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 75992 75994 . - 0 transcript_id "g127.t1"; gene_id "g127"; C.avellana_Jefferson_00006 AUGUSTUS tss 76111 76111 . - . transcript_id "g127.t1"; gene_id "g127"; # protein sequence = [MLQIRLRKPPSEGAGGVKPLPVETVTVACPDHLVLADLPVAKGIGAATAGSLVKTVGRRSRRPLGDRVHFCVRCDFPI # AIYGRLSPCEHAFCLDCARSDLICYLCDERIQKIQTIKMMEGIFICAAPHCLKSFLKRSDFESHIHESHANLLQPNAEKEDGNESESQSAKQSTASDS # TTRGPPRPVFSPSSSSQVHDREDKTRRQQSREPPPTRPIVQPKQPPSFGQVQNHPSELQPDNSRPQGFDRLGHPNRFHQQSFDNHGGPQQESGQFPDK # QQGILSENPFPEYPPNFAVPVNSSPMLNPPPLPFGYRPFQTEGGQPFYGTPFEMTRQDSASEVGPEQGSLLGFPPVQAYAQPWNAGFAGFSFEPPPGQ # GIVDGFTNASDSHGKVAFHQGDYGRNPGVMPSNPPPPLANKGMEQVQSGSVMDPRDGKGILAPQPMTLPPPPPPPPQHKRKFYPDASRDGQGYGWQHE # NRDSFGSGQD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g127 ### # start gene g128 C.avellana_Jefferson_00006 AUGUSTUS gene 79862 83731 0.05 - . g128 C.avellana_Jefferson_00006 AUGUSTUS transcript 79862 83731 0.05 - . g128.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 79862 79862 . - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS exon 79862 80740 . - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 80615 80617 . - 0 transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS intron 80741 80842 1 - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS intron 80948 81053 0.97 - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS intron 81153 81251 0.62 - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS intron 81386 81474 1 - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS intron 81554 81653 1 - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS intron 81873 83515 0.96 - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS CDS 80615 80740 0.74 - 0 transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS CDS 80843 80947 1 - 0 transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS exon 80843 80947 . - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS CDS 81054 81152 0.97 - 0 transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS exon 81054 81152 . - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS CDS 81252 81385 0.63 - 2 transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS exon 81252 81385 . - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS CDS 81475 81553 1 - 0 transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS exon 81475 81553 . - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS CDS 81654 81872 0.96 - 0 transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS exon 81654 81872 . - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS CDS 83516 83599 0.99 - 0 transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS exon 83516 83731 . - . transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 83597 83599 . - 0 transcript_id "g128.t1"; gene_id "g128"; C.avellana_Jefferson_00006 AUGUSTUS tss 83731 83731 . - . transcript_id "g128.t1"; gene_id "g128"; # protein sequence = [MVADSKSKSDISFAGTFASSAFAACVAEICTIPLDTAKVRLQLQKKAIAGDGVALPKYRGLLGTVGTIAREEGLSALW # KGIVPGLHRQCLFGGLRIGLYEPVKNLYVGKDFVGDVPLSKKILAGLTTGALAITIANPTDLVKVRLQAEGKLPPGVPRRYSGALNAYSTIVRQEGVG # ALWTGIGPNIARNAIINAAELASYDQVKQTILKIPGFTDNVLTHLLSGLGAGFFAVCIGSPVDVHGALHVISFQSAFDFIFLVPGVYNAIQFGDYFAR # WGSKCSC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g128 ### # start gene g129 C.avellana_Jefferson_00006 AUGUSTUS gene 87088 89381 0.01 - . g129 C.avellana_Jefferson_00006 AUGUSTUS transcript 87088 89381 0.01 - . g129.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 87088 87088 . - . transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS exon 87088 87432 . - . transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 87351 87353 . - 0 transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS intron 87433 87532 0.28 - . transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS intron 87649 88175 0.99 - . transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS intron 88405 88520 0.98 - . transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS intron 88625 88771 0.94 - . transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS CDS 87351 87432 0.28 - 1 transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS CDS 87533 87648 0.28 - 0 transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS exon 87533 87648 . - . transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS CDS 88176 88404 0.99 - 1 transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS exon 88176 88404 . - . transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS CDS 88521 88624 0.95 - 0 transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS exon 88521 88624 . - . transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS CDS 88772 89323 0.27 - 0 transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS exon 88772 89381 . - . transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 89321 89323 . - 0 transcript_id "g129.t1"; gene_id "g129"; C.avellana_Jefferson_00006 AUGUSTUS tss 89381 89381 . - . transcript_id "g129.t1"; gene_id "g129"; # protein sequence = [MRAPTRHATGMSRASLTFKVSPFILHHLRLRIRKRPIMKNQIPWSTVGMVAAWYGSNIGVLLLNKYLLSNYGFKYPVF # LTLCHMTACSLLSYVAIVCMKVVPMQTIKSGAQFLKIAGLSVVFCFSVVCGNVSLRYLPVSFNQAIGATTPFFTAVFAYVMTSKKEAWVTYLTLLPVV # AGVIIASGGEPSFHLFGFIMCVSATAARALKSVLQDILLSSDGEKLNSMNLLLYMAPIAVVFLLPAALLMEKNVVDITVALAKKDIKIVWYLLFNSSL # AYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFKNPISVIGMAGYGLTVVGVVIAEPASRLAGPPWLGLLLKADAHIVPA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g129 ### # start gene g130 C.avellana_Jefferson_00006 AUGUSTUS gene 90933 96701 0.03 - . g130 C.avellana_Jefferson_00006 AUGUSTUS transcript 90933 96701 0.03 - . g130.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 90933 90933 . - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS exon 90933 91510 . - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 90962 90964 . - 0 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS intron 91511 91788 0.97 - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS intron 91959 92069 0.74 - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS intron 92191 92685 1 - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS intron 92812 92913 1 - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS intron 93185 93272 0.99 - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS intron 93538 94256 0.55 - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS intron 94611 95257 0.75 - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS intron 95467 96320 0.94 - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS CDS 90962 91510 1 - 0 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS CDS 91789 91958 0.97 - 2 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS exon 91789 91958 . - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS CDS 92070 92190 0.74 - 0 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS exon 92070 92190 . - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS CDS 92686 92811 1 - 0 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS exon 92686 92811 . - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS CDS 92914 93184 0.99 - 1 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS exon 92914 93184 . - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS CDS 93273 93537 0.85 - 2 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS exon 93273 93537 . - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS CDS 94257 94610 0.82 - 2 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS exon 94257 94610 . - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS CDS 95258 95466 0.93 - 1 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS exon 95258 95466 . - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS CDS 96321 96664 0.64 - 0 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS exon 96321 96701 . - . transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 96662 96664 . - 0 transcript_id "g130.t1"; gene_id "g130"; C.avellana_Jefferson_00006 AUGUSTUS tss 96701 96701 . - . transcript_id "g130.t1"; gene_id "g130"; # protein sequence = [MGRLSFLYGRVQWTSATIWFLVFLLFVLHTIGGTSSASHYLIGLGSYDITGPAADVNMMGYANLEQTASGIHFRLRAR # SFIVAEPQGSRLVFVNLDACMASQIVTIKVLERLKARYGDLYTEQNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDVIVDGIEKSIVQAHESLR # PGTIFVNKGELLDAGVNRSPSAYLKNPAEERANYKYDVDKEMTLLKFVDDEWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDRFEQKGFLE # GFDEYFNKSGTEGIPRRVSTIVPNPKKNRNQFLRLAAHFQFSQGRPATRFSSLARRVRNASGQADRPQFVSAFCQSNCGDVSPNVLGAYCIDTGLSCD # FDHSTCNGKNELCYGRGPGYPDEFESTRIIGERQFRKAVELFGGATEPLKGKVDYRHTYLDFSNLEVSLPEARGGHEVVKTCPAALGFSFAAGTTDGP # GAFDFKQGDDQGNVFWRVVRDLIKTPIQEQIKCQHPKPILLDTGEIKEPYDWAPSILPVQILRIGQLVILSVPGGKITLLYLPLEYYLNIIHVEFTTM # AGRRLRDAVKLVLTSGSNGEFDKNVHVVIAGLTNTYSQYVTTFEEYQVQRYEGASTLYGPHTLDAYIQEFKKLAAALISGKAVEPGTQPPDLLGKQIS # LLPPVVVDATPPGVNFGDVKTDVPPNSTFKRREMVTVTFWSACPRNDLLTEATFAAVEILQDQKTWAPAYDDDDFCLRFKWSRPEKLSPYSYATMEWR # IPESAASGVYRISHFGASKSLFGSISHFTGSSSAFVVA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g130 ### # start gene g131 C.avellana_Jefferson_00006 AUGUSTUS gene 99648 100851 0.04 - . g131 C.avellana_Jefferson_00006 AUGUSTUS transcript 99648 100851 0.04 - . g131.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 99648 99648 . - . transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS exon 99648 100197 . - . transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 100156 100158 . - 0 transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS intron 100198 100280 0.75 - . transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS intron 100510 100602 1 - . transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS intron 100639 100757 1 - . transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS CDS 100156 100197 0.74 - 0 transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS CDS 100281 100509 0.85 - 1 transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS exon 100281 100509 . - . transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS CDS 100603 100638 1 - 1 transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS exon 100603 100638 . - . transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS CDS 100758 100789 1 - 0 transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS exon 100758 100851 . - . transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 100787 100789 . - 0 transcript_id "g131.t1"; gene_id "g131"; C.avellana_Jefferson_00006 AUGUSTUS tss 100851 100851 . - . transcript_id "g131.t1"; gene_id "g131"; # protein sequence = [MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVSWYAGKRMAYIYKAKVKNNGTHYRCIWGKVIR # PHGNSGIVRAKFKSNLPPKSMGARVRVFMYPSNI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g131 ### # start gene g132 C.avellana_Jefferson_00006 AUGUSTUS gene 101706 109944 0.03 + . g132 C.avellana_Jefferson_00006 AUGUSTUS transcript 101706 109944 0.03 + . g132.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 101706 101706 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS exon 101706 101799 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 101747 101749 . + 0 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS intron 101800 102297 0.36 + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS intron 103086 103173 0.78 + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS intron 103465 103547 0.73 + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS intron 104010 105643 0.97 + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS intron 105851 106320 0.86 + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS intron 106388 107444 0.62 + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS intron 107777 107924 0.8 + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS intron 108067 108366 0.99 + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS intron 108493 109331 0.94 + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS CDS 101747 101799 0.63 + 0 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS CDS 102298 103085 0.35 + 1 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS exon 102298 103085 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS CDS 103174 103464 0.61 + 2 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS exon 103174 103464 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS CDS 103548 104009 0.71 + 2 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS exon 103548 104009 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS CDS 105644 105850 0.9 + 2 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS exon 105644 105850 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS CDS 106321 106387 0.62 + 2 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS exon 106321 106387 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS CDS 107445 107776 0.62 + 1 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS exon 107445 107776 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS CDS 107925 108066 0.8 + 2 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS exon 107925 108066 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS CDS 108367 108492 0.99 + 1 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS exon 108367 108492 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS CDS 109332 109716 1 + 1 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS exon 109332 109944 . + . transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 109714 109716 . + 0 transcript_id "g132.t1"; gene_id "g132"; C.avellana_Jefferson_00006 AUGUSTUS tts 109944 109944 . + . transcript_id "g132.t1"; gene_id "g132"; # protein sequence = [MGERDMIVEFAGIPTTTRDWFGGLATENXXXXKPSYAWRSIHSSCALIREGLVWRIGDGKSVRIWEDRWLPNPSTYRV # QSYPVLLDRTATVSQLIEEDGHTWNHNLLVQIFTEEECSLIQALPISTTNQQDKQIXXXXATVSQLIDEDGHTWNHNLLVQIFTEEECSLIQALPIST # TNQQDKQIWRGTKMGVFTVKSAYYIQKEWEDMQLAESSSPKGISKVWKRIWQLQLPPVEKMWFWKACHDILPTRDALFRRKVITDPSCPLCGLEAETG # FHILWNXGMMAKCDQEEFRQFVITARRIWLRRNAFLYEGVFAHPDTIIRQVHVTLQELQQVKPGEPRSGQLEIPRVLGPQLPLQPGWFLVTWDAAVGT # RMGTVVTWDATVGTRMGTVGYGALIRNHQGELLAAKSLTRLGLLEPDAAEALGALMAIQLARQIGCLQIHLQGDAKVIVEAVNSNEQDWSRRGHLTDD # IRTALTVFTQWQMELSPETQTRKPICWHGWQRRRPWTECGLLIFLIVFENTVILSYLLGTCXQRSEAGEKESGKWSSYQYVGRTGSVLPTASLAGTEV # SVEEIRSASAFSDHYPPSIHGALVSSPEPDPNEQAIVYQGGYGGDYGGTTSDFGRQILDEVEIRELLIDHVGHRCCWGSRPARTWKIHAVEDCNVYVG # TLDTFIEERETIRETKPYLSGDIDGRDKGPELGIWELDLKSQFPVLFVPYKESQAKIPHSEHIDKCSGCAGRGDTVCLTCNANQEPGFFKENQMTQCP # VCYGRGLIAHKDGSDTICMNCNGKGKIPCATCASRGLIKCDKCHGSGSLLSHNVAVVRWKTLSTRKVGATSGAASVPDEVFHRAKGVQLCNTQAHQCT # PAFFADSFFLNKFSSEVIADRAHVPPSSRVICERHTISVVPVTRVTMSHRARSFSFYIIGFSREVYLKDYYPSRFCWGLCPCLEWLKL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g132 ### # start gene g133 C.avellana_Jefferson_00006 AUGUSTUS gene 111466 113081 0.22 - . g133 C.avellana_Jefferson_00006 AUGUSTUS transcript 111466 113081 0.22 - . g133.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 111466 111466 . - . transcript_id "g133.t1"; gene_id "g133"; C.avellana_Jefferson_00006 AUGUSTUS exon 111466 112249 . - . transcript_id "g133.t1"; gene_id "g133"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 111512 111514 . - 0 transcript_id "g133.t1"; gene_id "g133"; C.avellana_Jefferson_00006 AUGUSTUS CDS 111512 112243 0.93 - 0 transcript_id "g133.t1"; gene_id "g133"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 112241 112243 . - 0 transcript_id "g133.t1"; gene_id "g133"; C.avellana_Jefferson_00006 AUGUSTUS exon 112854 113081 . - . transcript_id "g133.t1"; gene_id "g133"; C.avellana_Jefferson_00006 AUGUSTUS tss 113081 113081 . - . transcript_id "g133.t1"; gene_id "g133"; # protein sequence = [MEPRWKGKGLKAKALAEPMSKIVSQLQSSLIQSDAHGLLAGCSVLIEVESEQTDLLDRACFGGRIITAEKDKDLFRLG # LEEAFYLCHSLKCLKIVGGDNCSKNDVELWQCMISKKSTFPDFYKAYSHLRMKNWVVKSGSNYGVDFVAYCHHPSLVHSEYAVLVLSEGEGEVNGRLR # LWSDLHCTTRVSRGVVKTLLVLKINKNGNGTASPSYLEKYTLVERTVTRWHPEQCREDHMIVEKRTK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g133 ### # start gene g134 C.avellana_Jefferson_00006 AUGUSTUS gene 124156 127639 0.14 + . g134 C.avellana_Jefferson_00006 AUGUSTUS transcript 124156 127639 0.14 + . g134.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 124156 124156 . + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS exon 124156 124940 . + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 124383 124385 . + 0 transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS intron 124941 125426 0.54 + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS intron 125500 125589 0.54 + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS intron 125661 125916 0.54 + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS intron 126006 126099 1 + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS intron 126233 126314 0.56 + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS intron 126563 126642 1 + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS intron 127120 127224 0.99 + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS CDS 124383 124940 1 + 0 transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS CDS 125427 125499 0.54 + 0 transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS exon 125427 125499 . + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS CDS 125590 125660 0.54 + 2 transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS exon 125590 125660 . + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS CDS 125917 126005 1 + 0 transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS exon 125917 126005 . + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS CDS 126100 126232 1 + 1 transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS exon 126100 126232 . + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS CDS 126315 126562 0.56 + 0 transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS exon 126315 126562 . + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS CDS 126643 127119 1 + 1 transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS exon 126643 127119 . + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS CDS 127225 127477 0.99 + 1 transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS exon 127225 127639 . + . transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 127475 127477 . + 0 transcript_id "g134.t1"; gene_id "g134"; C.avellana_Jefferson_00006 AUGUSTUS tts 127639 127639 . + . transcript_id "g134.t1"; gene_id "g134"; # protein sequence = [MSSGVVGPSNSGNVSPRHAAGPTKTRRRVADLIMTDTERTPSSVISDLSDQEDDSDLDGGSNCGSXXXXXXXXXXXXX # XXXXVLLLRSRAFFCVPDKWLLWAAVMAQSLRSGRNMGRKIFGLLMLMAFLSVFVKVSFLSSHVERREMKMDNGLLIVQTFKDDWSMAQRAVAETHTS # MPKRVLERLTTPEIWMKPNSDNFYRCIVRPKNRIRTGSKTNGYLLVHANGGLNQMRTGICDMVAVAKIMNATLVLPSLDHDSFWTDTSEFKDIFDWRH # FIEVLKDDIEIVEHLPSKYAALTPLPKAPVSWSKMLHLQASYYRNEMIPLLKRHKVIQFTHTDSRLANNGLASSIQKLRCRANYEALQYTKEIEDFGT # VLVDRLRNNSEPFIALHLRYEKDMLAFTGCSHNLTTKEAKELRIMRYGVKHWKEKEIDSKERRLQGGCPMSPREAALFLKAMGYPSTTTIYIVAGEMY # GSNSMAAFRSEYPNVFTHSTLATEEELLPFTPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRLNFVKLIDRLDEGAISWE # EFSLEVKNLHSNRLGAPYLRHAGESPRLEENFFANPFPGCVCNKSQEQLTRLKLDQRRLKAAAQR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g134 ### # start gene g135 C.avellana_Jefferson_00006 AUGUSTUS gene 127977 130141 0.01 - . g135 C.avellana_Jefferson_00006 AUGUSTUS transcript 127977 130141 0.01 - . g135.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 127977 127977 . - . transcript_id "g135.t1"; gene_id "g135"; C.avellana_Jefferson_00006 AUGUSTUS exon 127977 129033 . - . transcript_id "g135.t1"; gene_id "g135"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 128338 128340 . - 0 transcript_id "g135.t1"; gene_id "g135"; C.avellana_Jefferson_00006 AUGUSTUS intron 129034 129180 0.98 - . transcript_id "g135.t1"; gene_id "g135"; C.avellana_Jefferson_00006 AUGUSTUS CDS 128338 129033 0.9 - 0 transcript_id "g135.t1"; gene_id "g135"; C.avellana_Jefferson_00006 AUGUSTUS CDS 129181 129963 1 - 0 transcript_id "g135.t1"; gene_id "g135"; C.avellana_Jefferson_00006 AUGUSTUS exon 129181 130141 . - . transcript_id "g135.t1"; gene_id "g135"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 129961 129963 . - 0 transcript_id "g135.t1"; gene_id "g135"; C.avellana_Jefferson_00006 AUGUSTUS tss 130141 130141 . - . transcript_id "g135.t1"; gene_id "g135"; # protein sequence = [MSSLQLIPPSLPLPLLLNCKLPRGNRASEPHTLAQISKLKRSVARASINGDTNGAVEPPKPARRGRKKGPISSSATSP # PKKTKGSRKTEAENGTVGANESEKLDPEFDDYDDGIDFPYDDPPLICCFGAARKEFVPTVRVSDNQMHPDIYSEWKMLQWDPPEFVRAPGGPPSNVAI # SLVRLGGRAAFMGKVGKDNLGDEMVLAMNKEKVQTRAVKFDGNAKTACTYVKLNFEDGRMKSETVKEAAEDSLLSSELNLAVLKEARIFHFNSEVLTS # PSLQSTLFRAIAWSKKFGGLTFFDLNLPLPLWKSRDETREIIKKAWNEANIIEVSRQELEFLLDEDYYERKRNYRPQYYADNFEQTKNRRRDYYHYTR # EEISPLWHDGLKFLFVTDGTLRIHYYSPSFDGVVIGTEDVLITPFTCDRTGSGDAVVAGIMRKLTTNPEMFENQDVLERQLRFAISAGIISQWTIGAV # RGFPTESATQNLKEQVYVPSLW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g135 ### # start gene g136 C.avellana_Jefferson_00006 AUGUSTUS gene 134015 134821 0.18 - . g136 C.avellana_Jefferson_00006 AUGUSTUS transcript 134015 134821 0.18 - . g136.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 134015 134015 . - . transcript_id "g136.t1"; gene_id "g136"; C.avellana_Jefferson_00006 AUGUSTUS exon 134015 134821 . - . transcript_id "g136.t1"; gene_id "g136"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 134164 134166 . - 0 transcript_id "g136.t1"; gene_id "g136"; C.avellana_Jefferson_00006 AUGUSTUS CDS 134164 134781 0.91 - 0 transcript_id "g136.t1"; gene_id "g136"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 134779 134781 . - 0 transcript_id "g136.t1"; gene_id "g136"; C.avellana_Jefferson_00006 AUGUSTUS tss 134821 134821 . - . transcript_id "g136.t1"; gene_id "g136"; # protein sequence = [MGMILGKICVETPKYQVIKSLADYEIRKYPPSVIAEVAYDPSQFKGNKDGGFTVLANYIGALGNPQNSKPEKIAMTAP # VITKTQESPGEKIAMTAPVVTKAGGEEGKKNMVIMQFLLPDKYQKAEEAPKPVDERVVIREQGERKYGVVKFGGVATEAVVEEKVEKLKKSLERDGYK # ITGEFLLARYNPPWTLPPFRTNEVMIPIE] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g136 ### # start gene g137 C.avellana_Jefferson_00006 AUGUSTUS gene 139646 141702 0.66 + . g137 C.avellana_Jefferson_00006 AUGUSTUS transcript 139646 141702 0.66 + . g137.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 139646 139646 . + . transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS exon 139646 140131 . + . transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 139738 139740 . + 0 transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS intron 140132 140221 0.96 + . transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS intron 140492 140779 1 + . transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS CDS 139738 140131 0.98 + 0 transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS CDS 140222 140491 0.98 + 2 transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS exon 140222 140491 . + . transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS CDS 140780 141456 1 + 2 transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS exon 140780 141702 . + . transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 141454 141456 . + 0 transcript_id "g137.t1"; gene_id "g137"; C.avellana_Jefferson_00006 AUGUSTUS tts 141702 141702 . + . transcript_id "g137.t1"; gene_id "g137"; # protein sequence = [MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGMYQGGSELQLERIDVYYNEANGGRYVPRAVLMDLEPGTMDSVRT # GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVS # DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT # SRGSQQYRALSVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIAPTGLKMASTFIGNST # SIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEDEYEEEEEEEMNDM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g137 ### # start gene g138 C.avellana_Jefferson_00006 AUGUSTUS gene 144175 145551 0.14 - . g138 C.avellana_Jefferson_00006 AUGUSTUS transcript 144175 145551 0.14 - . g138.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 144175 144175 . - . transcript_id "g138.t1"; gene_id "g138"; C.avellana_Jefferson_00006 AUGUSTUS exon 144175 145551 . - . transcript_id "g138.t1"; gene_id "g138"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 144358 144360 . - 0 transcript_id "g138.t1"; gene_id "g138"; C.avellana_Jefferson_00006 AUGUSTUS CDS 144358 145410 1 - 0 transcript_id "g138.t1"; gene_id "g138"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 145408 145410 . - 0 transcript_id "g138.t1"; gene_id "g138"; C.avellana_Jefferson_00006 AUGUSTUS tss 145551 145551 . - . transcript_id "g138.t1"; gene_id "g138"; # protein sequence = [MAALSISRRFAAVTFFVFFFKSLAADPDSSFSFTRFGNDPKIESKIGVYGDAKVVNGGYAVQLTGPESSIAGLVKYKN # PIKLVEGKSRNLVSFSTYFSFAMTTGNSDGLDFLMVPSGFNDTSPFGLSLESGKSKIEFVAVRFNTLTDSDDGLVKNHVGIGVGNVLSAGLSNASAYN # LGPRSEKIHVWIDYEAASKGLEIRLSEHGGSRPSSPLLSYLIDLSKALEEEEMFVSFRSSAGNSSKTCFLHSWSFKIRYVPNWMHSEPLDPNAFAKST # KTLAVPKRSDCLSRVLAAMIFGAACGALAAFTVLYLWTIFGNRRPVAPEEFSMQPMDCEYKKVKIVVDKAIEDGKK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g138 ### # start gene g139 C.avellana_Jefferson_00006 AUGUSTUS gene 152348 155181 0.13 - . g139 C.avellana_Jefferson_00006 AUGUSTUS transcript 152348 155181 0.13 - . g139.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 152348 152348 . - . transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS exon 152348 152573 . - . transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 152493 152495 . - 0 transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS intron 152574 152755 0.96 - . transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS intron 153117 153764 0.61 - . transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS intron 153944 154760 1 - . transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS CDS 152493 152573 0.96 - 0 transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS CDS 152756 153116 0.8 - 1 transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS exon 152756 153116 . - . transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS CDS 153765 153943 0.76 - 0 transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS exon 153765 153943 . - . transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS CDS 154761 155150 0.69 - 0 transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS exon 154761 155181 . - . transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 155148 155150 . - 0 transcript_id "g139.t1"; gene_id "g139"; C.avellana_Jefferson_00006 AUGUSTUS tss 155181 155181 . - . transcript_id "g139.t1"; gene_id "g139"; # protein sequence = [MKLGLLLWRSPSQHSLSLPSLPFPSPTTKHPILLISANTQEELTARERRRLRNERRESKGATNWREQVEERLIKKPKK # RYASWTDELNLDNLAQLGPQWWVIRVSRIKVQDAAEVLARSLAKNFPDMDFKVYAPAIHVKRKLKNGSYSVTPKPLFRGCVFLRFVLNKEIHDFIREC # DGVGGFVGSRVGNTKKQINKPRPVSVVDMEAIFRQAKEEQEKTDRAFEEDQQKESLNSEMPIVDSHLDPNDETKSEMDLKPKRKSRKASDPLTDGSST # AKDYKLLVPGSTVRVVSGTLAEFVGNLKKMNRKTGKATVGFTLFGKESLVDLDVNDIIAETN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g139 ### # start gene g140 C.avellana_Jefferson_00006 AUGUSTUS gene 156856 159730 0.02 + . g140 C.avellana_Jefferson_00006 AUGUSTUS transcript 156856 159730 0.02 + . g140.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 156856 156856 . + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS exon 156856 157159 . + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 156986 156988 . + 0 transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS intron 157160 157274 1 + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS intron 157540 158261 1 + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS intron 158460 158552 0.93 + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS intron 159235 159326 1 + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS intron 159437 159519 0.95 + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS CDS 156986 157159 1 + 0 transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS CDS 157275 157539 1 + 0 transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS exon 157275 157539 . + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS CDS 158262 158459 0.93 + 2 transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS exon 158262 158459 . + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS CDS 158553 159234 0.93 + 2 transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS exon 158553 159234 . + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS CDS 159327 159436 0.98 + 1 transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS exon 159327 159436 . + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS CDS 159520 159584 0.28 + 2 transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS exon 159520 159730 . + . transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 159582 159584 . + 0 transcript_id "g140.t1"; gene_id "g140"; C.avellana_Jefferson_00006 AUGUSTUS tts 159730 159730 . + . transcript_id "g140.t1"; gene_id "g140"; # protein sequence = [MRNRSRAKKPEAFGKGKVTPIQVAFIVDRYLLDNNFSETRSIFRTEASSLISNSPVREAPKSLLSLGDMLDEYICLKE # QKVMVDQERVRLEQEKCRVQTLLQGMQAVMNTYNSSGGFPSQMNISSGATRSAVVAVSQPFLPNSSPSGCPVNNTPTVNPVSTPINTIMKPGSLPSPI # TDPSVKKRKDCKVSIDAAQAAKRSRSKVPARNFTNRGVNTLPQSDNAVDCQEIAQPSCAIRSSPDNCLPDEPLVQGSSVAKCLFNQPLLSIPSNSSDP # KTPVKPNSSPSDKSTSPLEISSSANCSNRNTSQAVTPTRCTVISSKRVTVSPNSQILYSMERSHCISASSPIKTNLKRHSRRDHVKGRLDFDVSDVAT # NSDKPIVGEISTSESGKEEDIFDIDFPNLDALGDFSFSEMLGDLDLGLEGVDYTCHPTLGSSVDTISGSSSPESVDVNMRANQLMSEYSSTVTEVLSG # KGMNINGPDSLTAVKSITQCITILSPG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g140 ### # start gene g141 C.avellana_Jefferson_00006 AUGUSTUS gene 160026 162651 0.04 - . g141 C.avellana_Jefferson_00006 AUGUSTUS transcript 160026 162651 0.04 - . g141.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 160026 160026 . - . transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS exon 160026 160226 . - . transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 160155 160157 . - 0 transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS intron 160227 160462 0.63 - . transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS intron 160970 161035 1 - . transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS intron 161261 162157 0.55 - . transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS CDS 160155 160226 0.63 - 0 transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS CDS 160463 160969 0.63 - 0 transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS exon 160463 160969 . - . transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS CDS 161036 161260 0.56 - 0 transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS exon 161036 161260 . - . transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS CDS 162158 162580 0.59 - 0 transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS exon 162158 162651 . - . transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 162578 162580 . - 0 transcript_id "g141.t1"; gene_id "g141"; C.avellana_Jefferson_00006 AUGUSTUS tss 162651 162651 . - . transcript_id "g141.t1"; gene_id "g141"; # protein sequence = [MVHATAASSSHALFSTSLSSSNLRVSPLYLGGKLIQTVTSNTTSKIPCKAVVGSTVTVAETKAQKKDKEFQIENLTTW # LLKQEQAGNIDAELTIVLSSISLACKQIASLLQRSSIINLTGAHGTINIQGEDQKKLDVISNELFCNCLRSSGRTGIIASEEEDVPVAVEETYSGHYI # VVFDPIDGSANIDTALTTGSIFGIYAPDKQCLLDIDDDSTLDQAKQKCIIDVCQSGSNLLAAGYCLYSSSVVFTLSLGKGVFAFTLDPSYGEFVLTHE # NIKIPKSGKIYSFNEGNYDLWDENLKKYLTHLRQPGNNGKPYSGRYIGCLVGEIHRMLLYGGIYGNPKNKNSKNGNLRLLYECAPMSYLVEQAGGIAT # DGHQRILDIKPAEVHQRTPIFIGSPDEVEKLQTYLC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g141 ### # start gene g142 C.avellana_Jefferson_00006 AUGUSTUS gene 164198 166391 0.13 - . g142 C.avellana_Jefferson_00006 AUGUSTUS transcript 164198 166391 0.13 - . g142.t1 C.avellana_Jefferson_00006 AUGUSTUS tts 164198 164198 . - . transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS exon 164198 164548 . - . transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 164477 164479 . - 0 transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS intron 164549 164658 0.99 - . transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS intron 165166 165276 1 - . transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS intron 165502 165889 0.76 - . transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS CDS 164477 164548 1 - 0 transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS CDS 164659 165165 0.99 - 0 transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS exon 164659 165165 . - . transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS CDS 165277 165501 0.76 - 0 transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS exon 165277 165501 . - . transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS CDS 165890 166327 0.99 - 0 transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS exon 165890 166391 . - . transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 166325 166327 . - 0 transcript_id "g142.t1"; gene_id "g142"; C.avellana_Jefferson_00006 AUGUSTUS tss 166391 166391 . - . transcript_id "g142.t1"; gene_id "g142"; # protein sequence = [MVSVAAATRPSHLLFSSSRSLSPFQQCVFESKTLVTCPNNNSSNGKKKHVAAGVRCMAVGTADQAAGAKKKKGAFEIQ # TLTNWLLKQEQAGAIDAELTIVLSSISMACKQIASLVQRASISNLTGVQGAVNIQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY # SGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADHGDDDTLDNVEQRCVVSVCQPGSNLLAAGYCMYSSSVIFVLTIGTGVFAFSLDPMYGEF # VLTQENIQIPKAGKIYSFNEGNYQLWDDKLKKYIDDLKDPGPTGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQA # GGKGSDGHRRVLDIMPNEIHQRVPLYIGSLEEVEKLEKYLA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g142 ### # start gene g143 C.avellana_Jefferson_00006 AUGUSTUS gene 171486 172908 0.49 + . g143 C.avellana_Jefferson_00006 AUGUSTUS transcript 171486 172908 0.49 + . g143.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 171486 171486 . + . transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS exon 171486 171654 . + . transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 171585 171587 . + 0 transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS intron 171655 171753 1 + . transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS intron 172081 172483 1 + . transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS CDS 171585 171654 0.9 + 0 transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS CDS 171754 172080 1 + 2 transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS exon 171754 172080 . + . transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS CDS 172484 172626 1 + 2 transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS exon 172484 172908 . + . transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 172624 172626 . + 0 transcript_id "g143.t1"; gene_id "g143"; C.avellana_Jefferson_00006 AUGUSTUS tts 172908 172908 . + . transcript_id "g143.t1"; gene_id "g143"; # protein sequence = [MAAFMSKLSLALFLSSLFLHAALAELICEDLPKSVCAFSVASSGKRCLLETSVAGDGSVSYQCRSSEVLVQRISEYIE # TDQCVQACGVDRNMIGISSDALLEPQFTAKLCSPACYHECPNIVDLYFNLAAGEGVFLPNLCESQRSNPHRAMSELLSSGVANGPIPAAYPPATAASA # PSA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g143 ### # start gene g144 C.avellana_Jefferson_00006 AUGUSTUS gene 174756 175802 0.2 + . g144 C.avellana_Jefferson_00006 AUGUSTUS transcript 174756 175802 0.2 + . g144.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 174756 174756 . + . transcript_id "g144.t1"; gene_id "g144"; C.avellana_Jefferson_00006 AUGUSTUS exon 174756 175190 . + . transcript_id "g144.t1"; gene_id "g144"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 174820 174822 . + 0 transcript_id "g144.t1"; gene_id "g144"; C.avellana_Jefferson_00006 AUGUSTUS intron 175191 175285 1 + . transcript_id "g144.t1"; gene_id "g144"; C.avellana_Jefferson_00006 AUGUSTUS CDS 174820 175190 0.9 + 0 transcript_id "g144.t1"; gene_id "g144"; C.avellana_Jefferson_00006 AUGUSTUS CDS 175286 175661 0.99 + 1 transcript_id "g144.t1"; gene_id "g144"; C.avellana_Jefferson_00006 AUGUSTUS exon 175286 175802 . + . transcript_id "g144.t1"; gene_id "g144"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 175659 175661 . + 0 transcript_id "g144.t1"; gene_id "g144"; C.avellana_Jefferson_00006 AUGUSTUS tts 175802 175802 . + . transcript_id "g144.t1"; gene_id "g144"; # protein sequence = [MNKITPQNCQNTSAGCRTLLRHPNQWAPTSGLATESIVFTIGSSSPNLATGRQASLPKVRRRPFFSFFCKRMKKGCWK # PGTVAQIGANLGTGGLPGETSVPPANLQFCQHPWSQLKFAEPRFLRMKKGCWKPGTVAQIGANLRTGCLSGETSVPPANLQFRQHPWSQLKLAEPRFL # RFANSLLKIADPAAGSPSTLQQRPASSVIANPRHRQSATWFALGDHQPCFLFFRFPSLTLAHHHRTRVRIWG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g144 ### # start gene g145 C.avellana_Jefferson_00006 AUGUSTUS gene 178476 179731 0.3 + . g145 C.avellana_Jefferson_00006 AUGUSTUS transcript 178476 179731 0.3 + . g145.t1 C.avellana_Jefferson_00006 AUGUSTUS tss 178476 178476 . + . transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS exon 178476 178646 . + . transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS start_codon 178577 178579 . + 0 transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS intron 178647 178754 1 + . transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS intron 179010 179307 0.57 + . transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS CDS 178577 178646 0.84 + 0 transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS CDS 178755 179009 0.57 + 2 transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS exon 178755 179009 . + . transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS CDS 179308 179471 0.78 + 2 transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS exon 179308 179731 . + . transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS stop_codon 179469 179471 . + 0 transcript_id "g145.t1"; gene_id "g145"; C.avellana_Jefferson_00006 AUGUSTUS tts 179731 179731 . + . transcript_id "g145.t1"; gene_id "g145"; # protein sequence = [MAAFMSKLSLVLFLSSLFLNAALAELACEDLPKSVCAFSVASLGKRCLLETSVAGNGRVAYQCRSSEVLVEKISEYIE # TDQCVQACGVXXXXLGGQQWTRGVPMQVIGGVFLPNLCVRQRSNPHRAMGELLSSGVANGPIPAAYGPIPAAYPPATAASAPSA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g145 ### # # ----- prediction on sequence number 7 (length = 176912, name = C.avellana_Jefferson_00007) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 7 on both strands # start gene g146 C.avellana_Jefferson_00007 AUGUSTUS gene 1 1511 0.21 - . g146 C.avellana_Jefferson_00007 AUGUSTUS transcript 1 1511 0.21 - . g146.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 1 1 . - . transcript_id "g146.t1"; gene_id "g146"; C.avellana_Jefferson_00007 AUGUSTUS exon 1 422 . - . transcript_id "g146.t1"; gene_id "g146"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 336 338 . - 0 transcript_id "g146.t1"; gene_id "g146"; C.avellana_Jefferson_00007 AUGUSTUS intron 423 920 0.59 - . transcript_id "g146.t1"; gene_id "g146"; C.avellana_Jefferson_00007 AUGUSTUS CDS 336 422 0.71 - 0 transcript_id "g146.t1"; gene_id "g146"; C.avellana_Jefferson_00007 AUGUSTUS CDS 921 1418 0.69 - 0 transcript_id "g146.t1"; gene_id "g146"; C.avellana_Jefferson_00007 AUGUSTUS exon 921 1511 . - . transcript_id "g146.t1"; gene_id "g146"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 1416 1418 . - 0 transcript_id "g146.t1"; gene_id "g146"; C.avellana_Jefferson_00007 AUGUSTUS tss 1511 1511 . - . transcript_id "g146.t1"; gene_id "g146"; # protein sequence = [MDGAEIPEAFHEWQQIPSPLPQNTPTEHQFGLGWESETALAVVGDNYLNPNDDGSIFPPPDLQSPEDPNSEGDDEEEN # RRPLVGYDQIGRRCRVRFEILRAAVFRVASRVRNTAVCAGGFWSIASVTGVVAAVLLSFLYVRVRRWRQKVHQQSKDRFVFLIREKDEKINQLLLHIA # QMNEVVSARRRVPVLRIG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g146 ### # start gene g147 C.avellana_Jefferson_00007 AUGUSTUS gene 5146 14088 0.01 + . g147 C.avellana_Jefferson_00007 AUGUSTUS transcript 5146 14088 0.01 + . g147.t1 C.avellana_Jefferson_00007 AUGUSTUS tss 5146 5146 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 5146 5534 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 5254 5256 . + 0 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS intron 5535 5764 0.91 + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS intron 5921 6793 0.96 + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS intron 6858 6946 0.84 + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS intron 7012 8856 0.47 + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS intron 8954 9378 0.98 + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS intron 9678 10594 0.93 + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS intron 10670 11119 0.88 + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS intron 11397 12276 0.97 + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS intron 12553 13430 0.99 + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS intron 13665 13825 1 + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 5254 5534 1 + 0 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 5765 5920 0.96 + 1 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 5765 5920 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 6794 6857 0.96 + 1 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 6794 6857 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 6947 7011 0.84 + 0 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 6947 7011 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 8857 8953 0.71 + 1 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 8857 8953 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 9379 9677 0.99 + 0 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 9379 9677 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 10595 10669 0.93 + 1 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 10595 10669 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 11120 11396 0.47 + 1 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 11120 11396 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 12277 12552 0.99 + 0 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 12277 12552 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 13431 13664 1 + 0 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 13431 13664 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS CDS 13826 13987 1 + 0 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS exon 13826 14088 . + . transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 13985 13987 . + 0 transcript_id "g147.t1"; gene_id "g147"; C.avellana_Jefferson_00007 AUGUSTUS tts 14088 14088 . + . transcript_id "g147.t1"; gene_id "g147"; # protein sequence = [MLVSALLTSVGINSGLCVLFFTLYSILRKQPSNYDVYIPRLLVEGTSTRRSGFNLERLIPSPGWVRRAWKLSEEELLS # SSGLDAVVFMRIITFCLKVFVVAGIIGVFVLLPVNCTGDQLEDVDFVDFSNNSLDVFTISNVSSGSKRLWIHFCAVYIVTVFVCSLLYYSPMPLHEIG # TLMILGLNTYHGGRNVDLVDHYEKKLEDIEENVRLEQSEVSLAGEEIHAAFVSFKSRYGAAIAFHLQQSINPTQWVTEQAPEPHDVYWPFFSSSFMRR # WISKLVVVVACILLTILFLIPVVVVQGLTNLSQLEGWFPFLESLLTMKPPETSSPPVPPARGNAPCTSVLGRTFVSQVITGYLPSLILMLFLKTVPPV # MELLSSIQGYVSNSGIERSACNKVLWFTIWNIFFATVFSGSVLYQVSIFLEPRNIPAKLAVSVPAQASFFIAYVVTSGWTSASSELFRLVPLVWSLIR # KPCTKSVDDELEVPSIPYHRDIPRLLFFGLLGITYFFLAPLILPFLLVYFCFGYIIYRNQFINVYAPKYETAGKFWPIVHNSMIFSLILMHAIAVGIF # TLKKLSVASTLIFPLAILTLLFNEYCRKRFLPVFTAYPAESLIKKDRADENDAAMAEFYDSLVTAYQDPAFMPIHFSSNSDSIHSPLISSAQV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/11 # CDS introns: 0/10 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g147 ### # start gene g148 C.avellana_Jefferson_00007 AUGUSTUS gene 17716 18614 0.07 + . g148 C.avellana_Jefferson_00007 AUGUSTUS transcript 17716 18614 0.07 + . g148.t1 C.avellana_Jefferson_00007 AUGUSTUS tss 17716 17716 . + . transcript_id "g148.t1"; gene_id "g148"; C.avellana_Jefferson_00007 AUGUSTUS exon 17716 18614 . + . transcript_id "g148.t1"; gene_id "g148"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 17746 17748 . + 0 transcript_id "g148.t1"; gene_id "g148"; C.avellana_Jefferson_00007 AUGUSTUS CDS 17746 18573 0.92 + 0 transcript_id "g148.t1"; gene_id "g148"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 18571 18573 . + 0 transcript_id "g148.t1"; gene_id "g148"; C.avellana_Jefferson_00007 AUGUSTUS tts 18614 18614 . + . transcript_id "g148.t1"; gene_id "g148"; # protein sequence = [MVFALGTYDTAEEAARAYDEAACLLRGANTRTNFWPRHSTPPALPSKITNLLLLRLKARHIAATSAPTSCLPVEQEIK # VKDYDDKFDSFFNADASDNITTVSFESSSLTGGFEEGSCVRALDMEEEIEEKEDLQFVDAERSDSYCSPFEITEEMVLGPLMELENHGDQEASVLGET # MKRMMFERKFSASLYAFNGIPECLRLKQSGVANDQTEKKDKEETFQKVVMQEEVENIPQTSTEIGXXXXXXXXXXXFLSTESSEQCLWSSLNLSSICS # I] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g148 ### # start gene g149 C.avellana_Jefferson_00007 AUGUSTUS gene 24756 28753 0.29 + . g149 C.avellana_Jefferson_00007 AUGUSTUS transcript 24756 28753 0.29 + . g149.t1 C.avellana_Jefferson_00007 AUGUSTUS tss 24756 24756 . + . transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS exon 24756 25281 . + . transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 24936 24938 . + 0 transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS intron 25282 25769 0.87 + . transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS intron 27007 27140 1 + . transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS CDS 24936 25281 0.99 + 0 transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS CDS 25770 27006 0.87 + 2 transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS exon 25770 27006 . + . transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS CDS 27141 28599 1 + 1 transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS exon 27141 28753 . + . transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 28597 28599 . + 0 transcript_id "g149.t1"; gene_id "g149"; C.avellana_Jefferson_00007 AUGUSTUS tts 28753 28753 . + . transcript_id "g149.t1"; gene_id "g149"; # protein sequence = [MEKTEEPNANKKCTTETRGFRGRASPHKHQYQYQHQLLQYSNQYGFCNQNQYQRYYPALLPLPPQIPLQLALTPPLPQ # NQSFRTKTHLYKPSCKLNNPPLVASSDTQVRNVTISTGPEGLERPKSLPPKGDNGRRIMGARTPQAVVTARRPDSGGVEGPVISLLANHFLVQFDSSQ # RIFHYNVEISPNPPKEVARMIKQKLVEENSIVLSGSFPAYDGRKNLYSPVEFQNDRLEFYVSLPLPTSKSALPKGEFNDLLEKPPKLKLFRINIKLVS # KFDGKELTSYLTKEGDDWIPLPQDYLHALDVVLRESPTEKCIAVGRSLYSSSMGGTKEIGGGAIGLRGFFQSLRPTQQGLALNVDFSVSAFHESIGVI # PYLQKRLDFLRDLSQRKTRGLTGEERKEVEKALKNIRVFVCHRESLQRYRVYGLTEEATENLCFADRDGKNLRLVSYFKEHYNYDIQFRNMPCLQISR # SKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPRERKAIIDGVMRGPVGPKSGIQGREFKLHVSGEMTRLNGRILQPPKLKLGDGGHVRDLI # PSRNDRQWNLLDSHVFEGAQIERWALISFGGTSEQKSYVPKFINQLSQRCEQLGIFLNKSTIVSPQFESTHVLNNVSLLESKLKKIHKAASNNLQLLV # CIMERKHKGYADLKRIAETSIGVVSQCCLYQNLSKLSSQFLANLALKINAKVGGCTVALFNSLPSQIPRVLQSDEPVIFMGADVTHPHPLDDFSPSVA # AVVGSMNWPAANKYVSRMRSQTHRQEIIQDLGAMVGELLEDFCQEVKKLPKRIIFFRDGVSETQFYKVLEEELQAIRDACNRFPGYKPLITFSVVQKR # HHTRLFPFETDPSSTQNQFSDENVPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYSLCYTFVRCTKPISLVPPAY # YAHLAAYRGRLYLERSEPTGYMRNASTFSRAAPPKASPLPKLSENVKKLMFYC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g149 ### # start gene g150 C.avellana_Jefferson_00007 AUGUSTUS gene 39929 41331 0.03 - . g150 C.avellana_Jefferson_00007 AUGUSTUS transcript 39929 41331 0.03 - . g150.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 39929 39929 . - . transcript_id "g150.t1"; gene_id "g150"; C.avellana_Jefferson_00007 AUGUSTUS exon 39929 40431 . - . transcript_id "g150.t1"; gene_id "g150"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 39957 39959 . - 0 transcript_id "g150.t1"; gene_id "g150"; C.avellana_Jefferson_00007 AUGUSTUS intron 40432 40503 0.79 - . transcript_id "g150.t1"; gene_id "g150"; C.avellana_Jefferson_00007 AUGUSTUS CDS 39957 40431 0.81 - 1 transcript_id "g150.t1"; gene_id "g150"; C.avellana_Jefferson_00007 AUGUSTUS CDS 40504 41039 0.38 - 0 transcript_id "g150.t1"; gene_id "g150"; C.avellana_Jefferson_00007 AUGUSTUS exon 40504 41331 . - . transcript_id "g150.t1"; gene_id "g150"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 41037 41039 . - 0 transcript_id "g150.t1"; gene_id "g150"; C.avellana_Jefferson_00007 AUGUSTUS tss 41331 41331 . - . transcript_id "g150.t1"; gene_id "g150"; # protein sequence = [MEISCGPSPRNRSDDLKKDGSEETHLRNFELESADNITGSNSQFRSMNALEILRESVKILRYNSSGFMIITALLICPM # TAVVLSNVLVKQSIVKRLTIRLLLVAKSSGLPLRPFVKHSCQHFAEMAVSSTMCFPLYITLSLLSKAAVVYSVDCSYSRKKFDVSKFYVIIAKIWSRL # VSTACTVVGFSPDLIVYVAIMMGLVFSVLFANAIIICNIAIVISVLEDVSGPQAMLRSSTLIKGQTQVGLLIFLGSTIGMAFIEGLFEHRVKTLSYGD # GSSRIWEGPLLVIMFSFVVLIDSMMSAVFYFSCRSFNMEALGGEGHSILETMAVSAERIGIQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g150 ### # start gene g151 C.avellana_Jefferson_00007 AUGUSTUS gene 43396 45285 0.15 + . g151 C.avellana_Jefferson_00007 AUGUSTUS transcript 43396 45285 0.15 + . g151.t1 C.avellana_Jefferson_00007 AUGUSTUS tss 43396 43396 . + . transcript_id "g151.t1"; gene_id "g151"; C.avellana_Jefferson_00007 AUGUSTUS exon 43396 43882 . + . transcript_id "g151.t1"; gene_id "g151"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 43439 43441 . + 0 transcript_id "g151.t1"; gene_id "g151"; C.avellana_Jefferson_00007 AUGUSTUS intron 43883 44560 0.88 + . transcript_id "g151.t1"; gene_id "g151"; C.avellana_Jefferson_00007 AUGUSTUS CDS 43439 43882 0.91 + 0 transcript_id "g151.t1"; gene_id "g151"; C.avellana_Jefferson_00007 AUGUSTUS CDS 44561 45142 0.88 + 0 transcript_id "g151.t1"; gene_id "g151"; C.avellana_Jefferson_00007 AUGUSTUS exon 44561 45285 . + . transcript_id "g151.t1"; gene_id "g151"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 45140 45142 . + 0 transcript_id "g151.t1"; gene_id "g151"; C.avellana_Jefferson_00007 AUGUSTUS tts 45285 45285 . + . transcript_id "g151.t1"; gene_id "g151"; # protein sequence = [MENPEPRLNLFTVLSESKRILNAHSRHFLALSVLFLLPLSFSLVVYPTLLHLLTDPFPKNTQILLRAHPFDIHTHHHH # HHQQEPIFSNNQLLSLLYSLFICAFSLLAVGSITFSVYHGFYGRPVKLISAIKSVFTSFFPLLLTVIIFQVIVSLICIAFGLFLFLVVRAMELLGHEV # EYSSPYFVTFSGVLLLALIMVLVYLQVNWSLVSVIVVVESRWGFEPLSRSASLVKGMRGVALSLLLFFGGFAGIVVWTGAVSAVGSDGASDEWKSWAF # VVQIVVTSTLLMLLLLYYAAANTVLYMYCKALHGELAVEIAEEFAREYVSLPFDDGKVPHVVSVFVS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g151 ### # start gene g152 C.avellana_Jefferson_00007 AUGUSTUS gene 46873 54301 0.03 - . g152 C.avellana_Jefferson_00007 AUGUSTUS transcript 46873 54301 0.03 - . g152.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 46873 46873 . - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS exon 46873 48022 . - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 47240 47242 . - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS intron 48023 49005 0.99 - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS intron 49195 49791 0.85 - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS intron 49873 50151 0.89 - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS intron 50281 51019 0.45 - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS intron 51092 51172 0.83 - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS intron 51242 51581 0.9 - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS intron 51984 53755 0.71 - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS intron 53870 53973 0.99 - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS CDS 47240 48022 1 - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS CDS 49006 49194 0.85 - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS exon 49006 49194 . - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS CDS 49792 49872 0.96 - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS exon 49792 49872 . - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS CDS 50152 50280 0.87 - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS exon 50152 50280 . - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS CDS 51020 51091 0.84 - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS exon 51020 51091 . - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS CDS 51173 51241 0.9 - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS exon 51173 51241 . - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS CDS 51582 51983 0.72 - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS exon 51582 51983 . - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS CDS 53756 53869 0.82 - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS exon 53756 53869 . - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS CDS 53974 54015 1 - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS exon 53974 54301 . - . transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 54013 54015 . - 0 transcript_id "g152.t1"; gene_id "g152"; C.avellana_Jefferson_00007 AUGUSTUS tss 54301 54301 . - . transcript_id "g152.t1"; gene_id "g152"; # protein sequence = [MRKHGWQLPYHPLQVVAVAVFLALGFAFYVFFAPFVGKKLYQYIVMGLYTPLITCVFGLYIWCAAADPADPGVFKSKK # YLKISDYEKHSRPKDSKLGGESTSSRLDANAATAGGKPVDNDVVGKDATSNDHINEIKEKNASPKPSSGFLLACSPCAIICNSCSSSEESSEQMSEEG # MFYCSLCEVEVFKYSKHCRVCDKCVDRFDHHCRWLNNCIGKKNYRQFFTLMVTSLLLLILQWSTGILVLICCSLERKRFSVDISAKLGSSFSLAPFII # VVAVCTILALIATLPLAQLFFFHILLIKKGISTYDYIIALREQEQEQQGVGAQQSPQMSPASSLTGLSSASSFTTFHRGAWCTPPRLFLEDQFDVIPP # ENASVSSLGKIGAREEQIKKKNPGAVKISPWTLARLNGEEVSKAAAEARKKSKILQPVPRRDAPFGLEPDSSFGSSGRRMVPRPDNNRRRANKRVRLP # ADLPLEPLPTVSVKEVEKGFNESSTSLAPLQLEARSAFQTSRAMSSSAGIVASSPESSLDSPDIHPFRVSSSGPEEARRLTGLSAAGAVSQGGIPLSR # STSDGYEASGGEDSDRVPSRIFQRSTNWSSLLFASGHDERVIKLNASSSSQANNSRKL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g152 ### # start gene g153 C.avellana_Jefferson_00007 AUGUSTUS gene 66256 71675 0.02 + . g153 C.avellana_Jefferson_00007 AUGUSTUS transcript 66256 71675 0.02 + . g153.t1 C.avellana_Jefferson_00007 AUGUSTUS tss 66256 66256 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS exon 66256 66632 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS exon 67602 67892 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 67610 67612 . + 0 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS intron 67893 68188 0.99 + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS intron 68273 68369 0.67 + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS intron 68682 68991 1 + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS intron 69077 69254 0.86 + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS intron 69388 69800 0.84 + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS intron 69930 70679 0.83 + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS intron 70875 71010 0.75 + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS intron 71134 71424 0.5 + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS CDS 67610 67892 0.97 + 0 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS CDS 68189 68272 1 + 2 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS exon 68189 68272 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS CDS 68370 68681 0.64 + 2 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS exon 68370 68681 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS CDS 68992 69076 0.86 + 2 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS exon 68992 69076 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS CDS 69255 69387 0.86 + 1 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS exon 69255 69387 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS CDS 69801 69929 0.94 + 0 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS exon 69801 69929 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS CDS 70680 70874 0.78 + 0 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS exon 70680 70874 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS CDS 71011 71133 0.73 + 0 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS exon 71011 71133 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS CDS 71425 71553 0.51 + 0 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS exon 71425 71675 . + . transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 71551 71553 . + 0 transcript_id "g153.t1"; gene_id "g153"; C.avellana_Jefferson_00007 AUGUSTUS tts 71675 71675 . + . transcript_id "g153.t1"; gene_id "g153"; # protein sequence = [MGGCASKPNISVNTPRKYFRRRRKGHRKISTSISDIPIKGIDDAGNHVSDFAVSEFVHLDFEKGAATTCKRSEVSNRT # FHLTQLQWNHSQIDANGICQEEAWFDSVSILESDSDDDFSSVYGDCFPSVGNAAQLLQYESASCFVDSGCKYEGFYGSYLKIDGGAQNSGEKTQENNV # KSCLPGLLPSVSFNDKGQHLSSPPPQRKQSAVIMYSYKRKSVDGNEKTEYCSSEKLLYRPRGGLQIPCSSGEKPTPGCXDKQKLPAPDCSAYVPIGVD # LFVCPRKINHIAQHLELPSVKAHEKLPIYPATMFLGENDGEGMSLVLYFKLSDHFDKEISPSFQDSIKRLVEDEMEKVKGFAKESLVPFRERLKILAG # VVNPEDLQLSSTERKLIHAYNDKPVLSRPQHNFFKGPNYFEIDLDIHRFSYISRKGLESFRDRLKYGILDVGLTIQPEELPEQVLCCVCLNKIDLVNH # SQIPTIVTLKDDRFGQTPVD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g153 ### # start gene g154 C.avellana_Jefferson_00007 AUGUSTUS gene 71902 75921 0.18 - . g154 C.avellana_Jefferson_00007 AUGUSTUS transcript 71902 75921 0.18 - . g154.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 71902 71902 . - . transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS exon 71902 72825 . - . transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 72543 72545 . - 0 transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS intron 72826 73620 0.97 - . transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS intron 73780 73867 0.99 - . transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS intron 74584 75326 1 - . transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS CDS 72543 72825 1 - 1 transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS CDS 73621 73779 0.96 - 1 transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS exon 73621 73779 . - . transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS CDS 73868 74583 1 - 0 transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS exon 73868 74583 . - . transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS CDS 75327 75812 1 - 0 transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS exon 75327 75921 . - . transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 75810 75812 . - 0 transcript_id "g154.t1"; gene_id "g154"; C.avellana_Jefferson_00007 AUGUSTUS tss 75921 75921 . - . transcript_id "g154.t1"; gene_id "g154"; # protein sequence = [MAEKEQPPPPSTLSSSSSSQVSKSTAYNLPSRPTITLPPRSSMETLFNXXXXXXXPGLGGLGFSPGPMTLLSSFFSDT # DDCRSFSQLLAGAMTSPAAIPSHQRQSFPPPDEGGSGAGDDDFRFRPNRPSNSAVPQSPIFTVPPGLSPAGLLDSPGLFSPGGQGPFGMTHQQALAQV # TAQAAQAYSHMNVKPDYSSSLSAAPATSLTQLPAFTSNATAHQKVPPSVPDSSVAMNETSDVSHSDQRSQPSTFTVDNPAADGYNWRKYGQKQVKGSE # FPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGQHNHQPPQTNKRAKDTGNSSSLGNPDLASQVQGGNSNKLRGMAPYSMSKKGQESSQATPEHLSA # TSDSEEVGDAETGVDERDEDEDEPNPKKRSTEVKVSEPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTSPGCNVRKHV # ERAASDPKAVITTYEGKHNHDVPAARSSSHNTAPSTTSQPRPDNAVAEKHTLMNKMDLRNNDQQPIARSRLKEEQIT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g154 ### # start gene g155 C.avellana_Jefferson_00007 AUGUSTUS gene 81566 84417 0.05 + . g155 C.avellana_Jefferson_00007 AUGUSTUS transcript 81566 84417 0.05 + . g155.t1 C.avellana_Jefferson_00007 AUGUSTUS tss 81566 81566 . + . transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS exon 81566 81793 . + . transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 81727 81729 . + 0 transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS intron 81794 82267 0.91 + . transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS intron 82502 82781 0.98 + . transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS intron 82880 83339 0.62 + . transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS intron 83383 84050 0.39 + . transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS CDS 81727 81793 0.98 + 0 transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS CDS 82268 82501 0.92 + 2 transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS exon 82268 82501 . + . transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS CDS 82782 82879 0.72 + 2 transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS exon 82782 82879 . + . transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS CDS 83340 83382 0.62 + 0 transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS exon 83340 83382 . + . transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS CDS 84051 84187 0.38 + 2 transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS exon 84051 84417 . + . transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 84185 84187 . + 0 transcript_id "g155.t1"; gene_id "g155"; C.avellana_Jefferson_00007 AUGUSTUS tts 84417 84417 . + . transcript_id "g155.t1"; gene_id "g155"; # protein sequence = [MEEEEEKQEKHQAKSIRCIVKLGGAAITCKSELEKINEENLEIVSSQLRQAMMLGQSPSTKVLGMDWSKRHGKSEVSC # SVDDFGNDAVVDSSRFIVVHGAGSFGHFQASKSGVHKGGLDQPLVKAGFVATRISVTTLNLEIVRALARAQFSAAHASEKWDVEKITLSKVSSFLCRG # YCFGWNVSIFLWMVNL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g155 ### # start gene g156 C.avellana_Jefferson_00007 AUGUSTUS gene 87951 90191 0.16 - . g156 C.avellana_Jefferson_00007 AUGUSTUS transcript 87951 90191 0.16 - . g156.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 87951 87951 . - . transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS exon 87951 88478 . - . transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 88377 88379 . - 0 transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS intron 88479 88965 0.95 - . transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS intron 89041 89122 0.97 - . transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS intron 89180 89295 0.97 - . transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS intron 89419 89972 0.99 - . transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS CDS 88377 88478 0.99 - 0 transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS CDS 88966 89040 1 - 0 transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS exon 88966 89040 . - . transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS CDS 89123 89179 0.97 - 0 transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS exon 89123 89179 . - . transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS CDS 89296 89418 1 - 0 transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS exon 89296 89418 . - . transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS CDS 89973 90095 0.99 - 0 transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS exon 89973 90191 . - . transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 90093 90095 . - 0 transcript_id "g156.t1"; gene_id "g156"; C.avellana_Jefferson_00007 AUGUSTUS tss 90191 90191 . - . transcript_id "g156.t1"; gene_id "g156"; # protein sequence = [MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSS # HNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDENMLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g156 ### # start gene g157 C.avellana_Jefferson_00007 AUGUSTUS gene 93357 101411 0.05 - . g157 C.avellana_Jefferson_00007 AUGUSTUS transcript 93357 101411 0.05 - . g157.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 93357 93357 . - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS exon 93357 93823 . - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 93665 93667 . - 0 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS intron 93824 94583 0.52 - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS intron 94666 94745 0.58 - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS intron 94827 95952 0.56 - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS intron 96026 96317 0.92 - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS intron 96564 97930 0.88 - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS intron 98014 99130 0.92 - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS intron 99285 99624 0.79 - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS intron 99714 100787 0.68 - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS CDS 93665 93823 0.27 - 0 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS CDS 94584 94665 0.57 - 1 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS exon 94584 94665 . - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS CDS 94746 94826 0.58 - 1 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS exon 94746 94826 . - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS CDS 95953 96025 0.59 - 2 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS exon 95953 96025 . - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS CDS 96318 96563 0.91 - 2 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS exon 96318 96563 . - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS CDS 97931 98013 0.9 - 1 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS exon 97931 98013 . - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS CDS 99131 99284 0.75 - 2 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS exon 99131 99284 . - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS CDS 99625 99713 0.77 - 1 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS exon 99625 99713 . - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS CDS 100788 101338 0.53 - 0 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS exon 100788 101411 . - . transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 101336 101338 . - 0 transcript_id "g157.t1"; gene_id "g157"; C.avellana_Jefferson_00007 AUGUSTUS tss 101411 101411 . - . transcript_id "g157.t1"; gene_id "g157"; # protein sequence = [MTPKWSSMVLDNRNMRSNSKHISGITEDYKLLPRSISQDSESFLLDAINMSFFERLNLAWKIMFPSSTSRKSSNARVA # KQRLKMILFSDRCAVNDEAKQKIVDNVVQALSDFVEIESQDKVQLSVSTDSDLGTIYSVTVPVRRVKPEYQDLDEVGAITNIEYKDTGERSGSVDVRF # DFFIPDERVSGNFWWAIHPQSLDSSQVPSNFHPSLGQITGGLSAQSLRLYNVDGSALSFEAQSEAALLDCCFQNESVAFSAASDGSVTRYDLHSGIND # TIGNHDDIATGIGYSDETCQVISAGLDKKLLFWDTRIAKALACSRNLGAEVESMSLFGFHLMVVIGASIYMYDLRNLDKSVQSRESHSDIRCVSPIPY # SKGYAAGSVDGRVAVEISHPSNPNDIEYMFRCHPKSKDGRYHLVSVNDIVFNPLIRGAFVTGDNEGYVSAWDARSRRRLFELPRHPNSVASLSYNHEG # QLLAVASSYTYQEAKELLVILLLTSTFYFCSTLSF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g157 ### # start gene g158 C.avellana_Jefferson_00007 AUGUSTUS gene 102296 102739 0.11 + . g158 C.avellana_Jefferson_00007 AUGUSTUS transcript 102296 102739 0.11 + . g158.t1 C.avellana_Jefferson_00007 AUGUSTUS tss 102296 102296 . + . transcript_id "g158.t1"; gene_id "g158"; C.avellana_Jefferson_00007 AUGUSTUS exon 102296 102739 . + . transcript_id "g158.t1"; gene_id "g158"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 102375 102377 . + 0 transcript_id "g158.t1"; gene_id "g158"; C.avellana_Jefferson_00007 AUGUSTUS CDS 102375 102644 0.95 + 0 transcript_id "g158.t1"; gene_id "g158"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 102642 102644 . + 0 transcript_id "g158.t1"; gene_id "g158"; C.avellana_Jefferson_00007 AUGUSTUS tts 102739 102739 . + . transcript_id "g158.t1"; gene_id "g158"; # protein sequence = [MESETSGVKCKRISTKKQRGESSDLGRAQRASKRVKMVGTQRCRDPQIPRYRHFLRLPISLSLGFVALALTSVSFLAR # NGLSGYGHSGK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g158 ### # start gene g159 C.avellana_Jefferson_00007 AUGUSTUS gene 103956 107266 0.03 + . g159 C.avellana_Jefferson_00007 AUGUSTUS transcript 103956 107266 0.03 + . g159.t1 C.avellana_Jefferson_00007 AUGUSTUS tss 103956 103956 . + . transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS exon 103956 104484 . + . transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 104192 104194 . + 0 transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS intron 104485 104863 0.46 + . transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS intron 104976 105553 0.99 + . transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS intron 105714 106003 1 + . transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS intron 106153 106824 1 + . transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS CDS 104192 104484 0.75 + 0 transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS CDS 104864 104975 0.49 + 1 transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS exon 104864 104975 . + . transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS CDS 105554 105713 0.99 + 0 transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS exon 105554 105713 . + . transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS CDS 106004 106152 1 + 2 transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS exon 106004 106152 . + . transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS CDS 106825 106980 0.27 + 0 transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS exon 106825 107266 . + . transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 106978 106980 . + 0 transcript_id "g159.t1"; gene_id "g159"; C.avellana_Jefferson_00007 AUGUSTUS tts 107266 107266 . + . transcript_id "g159.t1"; gene_id "g159"; # protein sequence = [MGRWRAGFLLLNHIATASKSLTPNLSRPLRPLRPSIPLCPAIHLLSLRPLSAIPSRVSVDFNEFDSGPPSFDHRNEFM # ANEDEETGKIPVKAYFLCTSINLKSMQAENLSNVVPPSSRSSNYIALRYCDFPSENTGLGVNGNLSYCRYMVVFQYGSAVLFNIEDHEVETYLDTVRR # HASGLLPEMRKDDYAVKEKPLLVEDMQGGPDYIVLKTLDTDGIRIIGSVLGQSIALDYFVSQIDGMLQEFAEINRGMEKTGTFTMDKKKLLQLVGKAN # SNLADVILKVGLFER] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g159 ### # start gene g160 C.avellana_Jefferson_00007 AUGUSTUS gene 108581 110051 0.09 - . g160 C.avellana_Jefferson_00007 AUGUSTUS transcript 108581 110051 0.09 - . g160.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 108581 108581 . - . transcript_id "g160.t1"; gene_id "g160"; C.avellana_Jefferson_00007 AUGUSTUS exon 108581 109386 . - . transcript_id "g160.t1"; gene_id "g160"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 109007 109009 . - 0 transcript_id "g160.t1"; gene_id "g160"; C.avellana_Jefferson_00007 AUGUSTUS intron 109387 109937 0.58 - . transcript_id "g160.t1"; gene_id "g160"; C.avellana_Jefferson_00007 AUGUSTUS CDS 109007 109386 0.67 - 2 transcript_id "g160.t1"; gene_id "g160"; C.avellana_Jefferson_00007 AUGUSTUS CDS 109938 109968 0.6 - 0 transcript_id "g160.t1"; gene_id "g160"; C.avellana_Jefferson_00007 AUGUSTUS exon 109938 110051 . - . transcript_id "g160.t1"; gene_id "g160"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 109966 109968 . - 0 transcript_id "g160.t1"; gene_id "g160"; C.avellana_Jefferson_00007 AUGUSTUS tss 110051 110051 . - . transcript_id "g160.t1"; gene_id "g160"; # protein sequence = [MQSFDGGHIERKPLKGLPDLLQEYNLPRGLFPQNITCYEFDESKAKLIVYLPSVCEVSFKDSSVIRYATRVKGTLLRG # KLTGIEGMKTKVLVWVKVTNVAVEGYKSDKVWFTAGVKKSRPKDAYDVPRAAVRVQEF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g160 ### # start gene g161 C.avellana_Jefferson_00007 AUGUSTUS gene 113650 114341 0.31 - . g161 C.avellana_Jefferson_00007 AUGUSTUS transcript 113650 114341 0.31 - . g161.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 113650 113650 . - . transcript_id "g161.t1"; gene_id "g161"; C.avellana_Jefferson_00007 AUGUSTUS exon 113650 114341 . - . transcript_id "g161.t1"; gene_id "g161"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 113693 113695 . - 0 transcript_id "g161.t1"; gene_id "g161"; C.avellana_Jefferson_00007 AUGUSTUS CDS 113693 114295 0.4 - 0 transcript_id "g161.t1"; gene_id "g161"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 114293 114295 . - 0 transcript_id "g161.t1"; gene_id "g161"; C.avellana_Jefferson_00007 AUGUSTUS tss 114341 114341 . - . transcript_id "g161.t1"; gene_id "g161"; # protein sequence = [MMMVFTILLSVPLIMAKGNYDHNSTHYSSSLDEDQHLFHAKAIYSREEMEARKRPECEEKCRFHFRPGTKAYKICMEV # CVGGGIPKTEVVARETECEERCKSHFRPGTEAYEICMEACRSAGKSKMEEIRIAKCEEECSHFGSGTKPHEICMEACGSTGISKMEEITMKCKEECSH # FGSEMRDYHRCMAECWISNLFELA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g161 ### # start gene g162 C.avellana_Jefferson_00007 AUGUSTUS gene 118997 122211 0.23 - . g162 C.avellana_Jefferson_00007 AUGUSTUS transcript 118997 122211 0.23 - . g162.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 118997 118997 . - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS exon 118997 119386 . - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 119150 119152 . - 0 transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS intron 119387 119486 0.82 - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS intron 119580 119917 0.76 - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS intron 120062 120931 0.8 - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS intron 121019 121109 0.99 - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS intron 121333 121955 0.98 - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS CDS 119150 119386 0.99 - 0 transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS CDS 119487 119579 0.82 - 0 transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS exon 119487 119579 . - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS CDS 119918 120061 0.81 - 0 transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS exon 119918 120061 . - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS CDS 120932 121018 0.99 - 0 transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS exon 120932 121018 . - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS CDS 121110 121332 0.88 - 1 transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS exon 121110 121332 . - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS CDS 121956 122143 0.99 - 0 transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS exon 121956 122211 . - . transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 122141 122143 . - 0 transcript_id "g162.t1"; gene_id "g162"; C.avellana_Jefferson_00007 AUGUSTUS tss 122211 122211 . - . transcript_id "g162.t1"; gene_id "g162"; # protein sequence = [MEAKLLETAKPGTPAHIIFKSSRPTLHFASQTPLEFLRSHSGGNGLRPLQXXXXXXXXXXPVRCARKKRVDESETLTL # DCIRHYLIRQEDSIIFSLLERAQYCYNADTYDHDAFSMDGSCGSLVEFMVRETEKLHAQVDRYKSPDEHPFFPGDLPEPMLPPLQYPQVLHPCADSIN # INNIVWNMYFRDLLPRLVKTGDDGNCGSAAVCDALCLQALSKRIHYGKFVAEAKFLSSPVAYEAAIRVQDRARLMELLTFETVEAAVKKRVETKSKIF # GQDVKSSQEEDEGDPVYKIKPSLVANLFGDWIMPLTKQVQVEYLLRRLD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g162 ### # start gene g163 C.avellana_Jefferson_00007 AUGUSTUS gene 123598 125081 0.51 - . g163 C.avellana_Jefferson_00007 AUGUSTUS transcript 123598 125081 0.51 - . g163.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 123598 123598 . - . transcript_id "g163.t1"; gene_id "g163"; C.avellana_Jefferson_00007 AUGUSTUS exon 123598 125081 . - . transcript_id "g163.t1"; gene_id "g163"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 123756 123758 . - 0 transcript_id "g163.t1"; gene_id "g163"; C.avellana_Jefferson_00007 AUGUSTUS CDS 123756 124976 0.98 - 0 transcript_id "g163.t1"; gene_id "g163"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 124974 124976 . - 0 transcript_id "g163.t1"; gene_id "g163"; C.avellana_Jefferson_00007 AUGUSTUS tss 125081 125081 . - . transcript_id "g163.t1"; gene_id "g163"; # protein sequence = [MAAEKKRLVPISIREEEIRCDRTHEDYDTCLIKGPTVLDAIQCTFFLMDPTISTPQNPVVEKIRSYPRKAEDRTMSKI # TEVTIVAGPPSPKCQIQHDAPAVVFSVGGYSSYAGNFFHDFNDGFIPMYVTVNSFFPDQDVVLVLTDVNDWWSSKFTELLRTFSKHPIINLDNESATH # CFPSASLGIITHGPMTVNPALLPNSKDMTDFRAFLGKAYGQTQTQNPPKSRPRLVITSRRGTVGRQLLNQDEVKIEAEKIGFDVSILEPKRGTPLNES # YALINSSHAMVGIHGAALTHSLFLRPGAVFVQVVPLGAEWVSEVCFEMSAKAMGLEYMEYKIMAEESSLIETYSKDEMIIKDPVAYRGEKFSNHPAMR # IYLRKQNVKLDIVRFRDYLKLVYVKAKKFMDKEG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g163 ### # start gene g164 C.avellana_Jefferson_00007 AUGUSTUS gene 126784 128861 0.13 - . g164 C.avellana_Jefferson_00007 AUGUSTUS transcript 126784 128861 0.13 - . g164.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 126784 126784 . - . transcript_id "g164.t1"; gene_id "g164"; C.avellana_Jefferson_00007 AUGUSTUS exon 126784 128249 . - . transcript_id "g164.t1"; gene_id "g164"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 127000 127002 . - 0 transcript_id "g164.t1"; gene_id "g164"; C.avellana_Jefferson_00007 AUGUSTUS intron 128250 128360 0.92 - . transcript_id "g164.t1"; gene_id "g164"; C.avellana_Jefferson_00007 AUGUSTUS CDS 127000 128249 0.92 - 2 transcript_id "g164.t1"; gene_id "g164"; C.avellana_Jefferson_00007 AUGUSTUS CDS 128361 128541 0.45 - 0 transcript_id "g164.t1"; gene_id "g164"; C.avellana_Jefferson_00007 AUGUSTUS exon 128361 128630 . - . transcript_id "g164.t1"; gene_id "g164"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 128539 128541 . - 0 transcript_id "g164.t1"; gene_id "g164"; C.avellana_Jefferson_00007 AUGUSTUS exon 128713 128861 . - . transcript_id "g164.t1"; gene_id "g164"; C.avellana_Jefferson_00007 AUGUSTUS tss 128861 128861 . - . transcript_id "g164.t1"; gene_id "g164"; # protein sequence = [MMRESALGLLRIPSHRDMMKKRESTTVIACIAILLLFFVFHFNFSIMSRINATRPAIKTQGRKRLVPKSIRNARIVHK # PPPRQSTRAEEISCDRAHHTYDICSINGPTVLDPTASTFFLMDPTRSTPQKPLVEKVRPYARKLENFTMSRIKEVTLVAGPRSPKCEIQHKAPALVFS # AGGYTGNFFHEFNDGFIPLYITVNTIFPDQEVVLVISKARDWWISKYTELLRTFSKYPIINLDNDTATHCFPSASVGMISHGFMTINPSLIPTSKNFT # HFRAFLGKAYGQNRNLQNLPKSRPLLVLAGRSGGVGRLLLNQNEAKLEAEMVGFDVIVFEPTPGTPLKEAYALINSSHAMVGIHGAALTHSVFLRPGA # VFVQVVPLGAEWVAEVCFERSARAMGIEYMEYRIKAEESSLMDKYGKDEMIVKDPAAFRGKKWSQEAMTIYLKEQNVKLDMVRFREYLKVAYKKAKKF # MDKEGQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g164 ### # start gene g165 C.avellana_Jefferson_00007 AUGUSTUS gene 144346 148895 0.08 + . g165 C.avellana_Jefferson_00007 AUGUSTUS transcript 144346 148895 0.08 + . g165.t1 C.avellana_Jefferson_00007 AUGUSTUS tss 144346 144346 . + . transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS exon 144346 144440 . + . transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS exon 145015 145250 . + . transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 145017 145019 . + 0 transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS intron 145251 145365 1 + . transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS intron 146186 146475 1 + . transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS CDS 145017 145250 1 + 0 transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS CDS 145366 146185 1 + 0 transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS exon 145366 146185 . + . transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS CDS 146476 148688 0.99 + 2 transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS exon 146476 148895 . + . transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 148686 148688 . + 0 transcript_id "g165.t1"; gene_id "g165"; C.avellana_Jefferson_00007 AUGUSTUS tts 148895 148895 . + . transcript_id "g165.t1"; gene_id "g165"; # protein sequence = [MGTKVQCKGYLPGYYTMRDLNENSNSCSWPLYYGDKTLVNGQYYNDFLPRAATDSYPDYDKDVVKQMMLEHEAIFKNQ # VYELHRLYRIQRDLMDEFKRKELHKTRMPIESSLSSSPLASQITSEDPRKWHIPSFPLANSVCARPSVSGVEDIHSTLSSIKGNSAQGGPFLSQNGGN # SKDLEVLDSRPSKVRRKTFDLQLPADEYIDTEEGDQISKENGSGMSSYHSNRNHKVGPENGVKLFPIDGRKSGFQGEASPSVSCLESRNGLADLNEPI # QIEETNASGYVDVLGRRACHLEVQGPDLSAKPNSQFLSLQKEISLNSHNGTDNGTWNTRHLENNGNGKGWFSHMLESGHSKSNLNSASQGFQPEISSQ # PMQVLLNKAHESSAYYLTDQSKIGLWNERTVCALEMSDRGHEISSNKHLGSIVASHVPSPYTIAPSSDFAKSWSHSVSSWERQSSSLSQKSISVKKQP # CLNSSANLSKSSQSSVQSNGFLGDAWHIKSNPRCDPSFGSEVPNRNGFYHGSSSGSKEPGHLPSISYDYLNSSNDHHRAPDHFFNNGMMKYFKGSDCL # DMNSVKDENVNAVLSNSSSNKVASQQGFEMIDGGQKHEEHLAVLPWLRPKPASKNQASNAGRISTTEEPSFLQFSPKQLSNKIEKEKGTNEIFTQNLK # SDSCSNDVEIKRTEVGAHPSNRKILGFPIFEKSHISKNESSSFTSPSVSLPLPSEGEVVENNGKNRVLDINLPCEPAVPDLGDQITAEVLVKDKKTDA # NVSIFRHNIDLNFSISDDETSLVPSIPSTNVKITAGIDLEAPVVVETEEEVIPGEAAEKQHVVLLQSPQQKAEHPEDEVMMVAAEAIVAISSTSLHNQ # FDDTTCNPSEASVDRLNWFVEIVSSCGDDIESKFDLVLRVKDSEDNXXXXXXXXXSDYFEFMTLKLIETKEEDYMPKPLVPENLKLEETGATLLPNRA # RKGQARRGRQRRDFQRDILPGLASLSRHEVTEDLQTFGGLMRATGHLWHSGLTRRSSTRNGCGRGRRRSVASSSPTVPMSSACTPLIQQLNIVEVGLE # DRSLTGWGKTTRRPRRQRCPAGNHTSIPLT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g165 ### # start gene g166 C.avellana_Jefferson_00007 AUGUSTUS gene 151886 154158 0.62 + . g166 C.avellana_Jefferson_00007 AUGUSTUS transcript 151886 154158 0.62 + . g166.t1 C.avellana_Jefferson_00007 AUGUSTUS tss 151886 151886 . + . transcript_id "g166.t1"; gene_id "g166"; C.avellana_Jefferson_00007 AUGUSTUS exon 151886 154158 . + . transcript_id "g166.t1"; gene_id "g166"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 151955 151957 . + 0 transcript_id "g166.t1"; gene_id "g166"; C.avellana_Jefferson_00007 AUGUSTUS CDS 151955 154093 0.73 + 0 transcript_id "g166.t1"; gene_id "g166"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 154091 154093 . + 0 transcript_id "g166.t1"; gene_id "g166"; C.avellana_Jefferson_00007 AUGUSTUS tts 154158 154158 . + . transcript_id "g166.t1"; gene_id "g166"; # protein sequence = [MKLVSTLRTHFPLTKKPYLPWRTLTYATHQQPLESPELALAQTIASMHSISSNPCFALLGFCRNIDSLKIIHGMLVVN # GLTGELLYDTKLVSLYGSFGHVEHARLVFDRIENPDFYAWKVMIRWYYLNDLYSEIIRFYTRKRICGRECDNAVFSFVLKACCELRDIDDGRKVHCQI # VKAGGPDSFVLTSLVNMYAKCRDIGSSREVFDEILDRNVVSWTSMIAGYMQNDCPIEGLALFNRMREGLVEDNEFTVGSLVTACANLRALHQGKWLHG # YLIKKGFEFNPFLVTALLDMYVKCGDVRDARSVFDEFSPTDLVSWTAMIAGYAQNDHPNEALKLFMDKKWVDILPNSATTTSVLSACSKLGNSDMGRS # VHGLVIKLGLGEPTVSNALIDMYAKCHMIRDASYIFETVLDKNEITWNSIISGHSLIGNAYEALELFNRMISDSVSPDAFTLVRVLSTCASLGALRVG # SSLHALSMKKGLLSSSVYVGTALLNLYAKCGDVKSARIVFDGMGEKNTITWSAIIGGYGMQGDGNGSLALFSEMLKEKLEPNEVIFTTILSACSHTGK # IGEGWRCFNLMCQDFNFVPSMKHYACMVDLLSRAGRLEEALDFIENMPVQPDVSLIGSFLHGCGLHARLDLGEVAIRKMLQLHPNEASYYVLMCNLYA # SDGRWSQVNQVRELMKQRGLSKSPGCSLVEMDIIDDISPAKVASLP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g166 ### # start gene g167 C.avellana_Jefferson_00007 AUGUSTUS gene 154620 157031 0.06 - . g167 C.avellana_Jefferson_00007 AUGUSTUS transcript 154620 157031 0.06 - . g167.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 154620 154620 . - . transcript_id "g167.t1"; gene_id "g167"; C.avellana_Jefferson_00007 AUGUSTUS exon 154620 157031 . - . transcript_id "g167.t1"; gene_id "g167"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 154642 154644 . - 0 transcript_id "g167.t1"; gene_id "g167"; C.avellana_Jefferson_00007 AUGUSTUS CDS 154642 156993 0.42 - 0 transcript_id "g167.t1"; gene_id "g167"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 156991 156993 . - 0 transcript_id "g167.t1"; gene_id "g167"; C.avellana_Jefferson_00007 AUGUSTUS tss 157031 157031 . - . transcript_id "g167.t1"; gene_id "g167"; # protein sequence = [MLRTLTQLHAHLFVTGLHKDPLASTKLVESYAQMGTLQSSRLVFETFPSPDSFMWGVLIKCYVWNHFFEESIALYHKM # LYHQVQVNRFIYPSILRACSGFGDLGIGRKVHGRIFKCGFDTDAIVETSLLNVYGEMGCLDDARMIFDGMLIKDVVLWSSIISCYVEKGYTSEGLDLF # RRMVSQGVEPDSVTMLCVAEACGGLGFLRQARAVHCQVVTRAIKSDGSLDSYLVVMYNECGDLRSAERIFQNVTHRHTGSWTAMITCYNQNGLFREAI # DVFVEMQGSKAEPNSVTMMSIIRSCARIGLLREGKSVHCFVIRKALDADLDFLGPTLIELYAECGKLNTCEGVLHALGERNIVSWNMLISLYAQKGLL # KEALSLFVQIQTQRLMPDSYSLSSSLSACGNVGSIKLGHQIHGHVIKRGIMDEFVQNSLIDMYSKCGFVDSAYMIFEKINQRSVVTWNSMICGFSQNG # NSVEAIRLFDQMYLNGTEMNEVTFLSAIQACSHLGHLEKGKWVHHKLITCGVKKDLYVDTALTDMYAKCGDLHAAQGVFDSMSERSVVSWSTMIAGYG # IHGQIDAAISLFSQMVDSGTQPNEVIFMNILSACSHAGSVEEGSSYFSSMKDFGIEPNTEHFSSVVDLLSRAGDLNGAYEIIKSMPFPVDASIWGALL # NGCRIHRRMDIIRSIEGDLLDIRTDDTGYFTLLSNIYAEGGDWNEFGKVRSVMKGIGLTKVPGWSTIELDKRIYTFGAGDTSHLQRNEIYRVSENLST # LAVEQGYDVQYDSSISNIL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g167 ### # start gene g168 C.avellana_Jefferson_00007 AUGUSTUS gene 157864 161041 0.11 - . g168 C.avellana_Jefferson_00007 AUGUSTUS transcript 157864 161041 0.11 - . g168.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 157864 157864 . - . transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS exon 157864 158294 . - . transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 158060 158062 . - 0 transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS intron 158295 159084 0.35 - . transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS intron 159164 159506 0.72 - . transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS intron 159680 159854 1 - . transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS intron 159950 160631 0.43 - . transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS CDS 158060 158294 0.42 - 1 transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS CDS 159085 159163 0.36 - 2 transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS exon 159085 159163 . - . transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS CDS 159507 159679 0.93 - 1 transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS exon 159507 159679 . - . transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS CDS 159855 159949 0.99 - 0 transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS exon 159855 159949 . - . transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS CDS 160632 160973 0.78 - 0 transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS exon 160632 161041 . - . transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 160971 160973 . - 0 transcript_id "g168.t1"; gene_id "g168"; C.avellana_Jefferson_00007 AUGUSTUS tss 161041 161041 . - . transcript_id "g168.t1"; gene_id "g168"; # protein sequence = [MVEMVQGLSLSTLATSGKSGVYGSIASWRKHYKLMKKTQMASATDRHYIWPQYVQSLFLTANPNILRQRNVRVEAGWL # FKGGGQGLDASSERSESANEDILIFFFQLDLATRVQVEAEVMRQQEAKRGSSSKSKVQDKAISIIRLRADLQHAIESENYALAADLRDEISKLESESL # AASVNALAYESVQYSFHLGQKVRHKIFGYCAVICGMDPMCCESSSWMEIAQVEKIALSNTITPSCAMLLDCASAALNHVQGRFDHPYISFLFYGLDGA # GDFIPIKQLREKYNRPRHEVPFDSEDEKPGGVA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g168 ### # start gene g169 C.avellana_Jefferson_00007 AUGUSTUS gene 163710 171221 0.01 - . g169 C.avellana_Jefferson_00007 AUGUSTUS transcript 163710 171221 0.01 - . g169.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 163710 163710 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 163710 164048 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 163973 163975 . - 0 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 164049 164387 0.5 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 164480 164744 0.51 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 164820 164901 0.62 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 165095 165405 0.5 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 165474 165723 0.67 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 165833 166403 0.78 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 166656 167114 0.98 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 167319 167491 0.99 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 167586 168142 0.57 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 168214 168326 0.95 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 168447 169080 0.96 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 169137 169448 1 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS intron 169527 169608 1 - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 163973 164048 0.51 - 1 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 164388 164479 0.52 - 0 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 164388 164479 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 164745 164819 0.61 - 0 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 164745 164819 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 164902 165094 0.47 - 1 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 164902 165094 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 165406 165473 0.67 - 0 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 165406 165473 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 165724 165832 0.76 - 1 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 165724 165832 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 166404 166655 0.8 - 1 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 166404 166655 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 167115 167318 1 - 1 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 167115 167318 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 167492 167585 0.99 - 2 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 167492 167585 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 168143 168213 0.95 - 1 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 168143 168213 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 168327 168446 0.96 - 1 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 168327 168446 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 169081 169136 1 - 0 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 169081 169136 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 169449 169526 1 - 0 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 169449 169526 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS CDS 169609 169923 1 - 0 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 169609 170069 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 169921 169923 . - 0 transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS exon 171060 171221 . - . transcript_id "g169.t1"; gene_id "g169"; C.avellana_Jefferson_00007 AUGUSTUS tss 171221 171221 . - . transcript_id "g169.t1"; gene_id "g169"; # protein sequence = [MYRNVATATTRGGVPTDSGDSIVSLDQVPRWSDAEHRSSLEFEVEDPSFSNSYFPDPLTSPGAESGSNAMVSRFPVDH # EINSKIYLWRGNPWNLEVDAVVNSTNENLDEAHSSLGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCY # RSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRLLEKQKDKITAVVFCTTTSTDTEIYKRLLPLYFPRDKHEEEVAISKLPADVGDENG # ETIIDERKIRIKPLPKKTAPKPPQAPVDLPVSDVGLARRNSSHLGSFLDPAFMSLIKDPDQRRKEQWEKTAQAQRGWNCAKLLGFGDLGAPPLSAAEE # YSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLHVVKEFEPLIQKPYTIVYFHSAASLQPLSGTGTGYLRSFYA # LHVKFLLLEVIQFFSLGTLCMRLAINSQPDFGWMRRLQQILGRKHQRNLHAIYVLHPTFGLKAAIFALQLLVDNTVWKKVAYVDRLLQLFRYVPREQL # TIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/14 # CDS introns: 0/13 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g169 ### # start gene g170 C.avellana_Jefferson_00007 AUGUSTUS gene 172101 174141 0.09 - . g170 C.avellana_Jefferson_00007 AUGUSTUS transcript 172101 174141 0.09 - . g170.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 172101 172101 . - . transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS exon 172101 172803 . - . transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 172183 172185 . - 0 transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS intron 172804 172889 0.39 - . transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS intron 173355 173546 0.7 - . transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS CDS 172183 172803 0.39 - 0 transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS CDS 172890 173354 0.38 - 0 transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS exon 172890 173354 . - . transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS CDS 173547 174116 0.7 - 0 transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS exon 173547 174141 . - . transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 174114 174116 . - 0 transcript_id "g170.t1"; gene_id "g170"; C.avellana_Jefferson_00007 AUGUSTUS tss 174141 174141 . - . transcript_id "g170.t1"; gene_id "g170"; # protein sequence = [MSISDALHPHPPHVALFPSAGMGHLIPFLRFAARLIHHHCRVTLITAHPTVSLAESHFVSRFLSAFPQVSEAQFHLLP # LDLSSPKSTDPFFLGFEAMRCSAHSLPPLLASLSPPLHALVFDVTLISPVIPVTQALHIPTYILFTSSVRMLSFFSYFPTFASSAIHDSAQIPGLMPI # TRSSIPPLLLTSYRAPQTQSQTDXXXXLVFDVTLISSVIPITEALHIPSYILFTSSARMLSFFSYFPTFASNATDDSAQIPGLTPIPRSSIPPLLLIS # DNLFANIFKEDSPKVSKLNGIVINSXXXXSDNLFANIFKEDSPKVPKLNGIVINSFDGLEAESLEALNGGKWLDEQPNGSVVYVSFGSRTAMSRDQTR # EIGNGLIKSGCRFLWVVKDKKVDKEEEEGLDEIVGRELMGRMKGMGLVVKNWVDQGEILRHRAVGGFVSHCGWNSVVEAAWHGVPILGWPQHGDQKIN # AEVVEMSGLGMWVRSWGWAEQVVVKGEEIGDRIREMMGSELLRRKAAGVKEEARKAVGDGGCCGINLMRLFQEWKMRNMNI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g170 ### # start gene g171 C.avellana_Jefferson_00007 AUGUSTUS gene 174993 176611 0.27 - . g171 C.avellana_Jefferson_00007 AUGUSTUS transcript 174993 176611 0.27 - . g171.t1 C.avellana_Jefferson_00007 AUGUSTUS tts 174993 174993 . - . transcript_id "g171.t1"; gene_id "g171"; C.avellana_Jefferson_00007 AUGUSTUS exon 174993 175212 . - . transcript_id "g171.t1"; gene_id "g171"; C.avellana_Jefferson_00007 AUGUSTUS stop_codon 175078 175080 . - 0 transcript_id "g171.t1"; gene_id "g171"; C.avellana_Jefferson_00007 AUGUSTUS intron 175213 176384 0.96 - . transcript_id "g171.t1"; gene_id "g171"; C.avellana_Jefferson_00007 AUGUSTUS CDS 175078 175212 1 - 0 transcript_id "g171.t1"; gene_id "g171"; C.avellana_Jefferson_00007 AUGUSTUS CDS 176385 176585 0.99 - 0 transcript_id "g171.t1"; gene_id "g171"; C.avellana_Jefferson_00007 AUGUSTUS exon 176385 176611 . - . transcript_id "g171.t1"; gene_id "g171"; C.avellana_Jefferson_00007 AUGUSTUS start_codon 176583 176585 . - 0 transcript_id "g171.t1"; gene_id "g171"; C.avellana_Jefferson_00007 AUGUSTUS tss 176611 176611 . - . transcript_id "g171.t1"; gene_id "g171"; # protein sequence = [MLVHFLFQHQSYDIQRLQVGCTPLHRAASTGNSELCEFLIEEGAEVDAVDKAGQTCLMNAVICHNKEIALLLVRHGAD # VDVEDKEGYTVLGRASDDFRPLLVDAAKAMLEG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g171 ### # # ----- prediction on sequence number 8 (length = 171901, name = C.avellana_Jefferson_00008) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 8 on both strands # start gene g172 C.avellana_Jefferson_00008 AUGUSTUS gene 10567 11221 0.18 - . g172 C.avellana_Jefferson_00008 AUGUSTUS transcript 10567 11221 0.18 - . g172.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 10567 10567 . - . transcript_id "g172.t1"; gene_id "g172"; C.avellana_Jefferson_00008 AUGUSTUS exon 10567 11221 . - . transcript_id "g172.t1"; gene_id "g172"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 10644 10646 . - 0 transcript_id "g172.t1"; gene_id "g172"; C.avellana_Jefferson_00008 AUGUSTUS CDS 10644 11072 1 - 0 transcript_id "g172.t1"; gene_id "g172"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 11070 11072 . - 0 transcript_id "g172.t1"; gene_id "g172"; C.avellana_Jefferson_00008 AUGUSTUS tss 11221 11221 . - . transcript_id "g172.t1"; gene_id "g172"; # protein sequence = [MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKC # WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g172 ### # start gene g173 C.avellana_Jefferson_00008 AUGUSTUS gene 17156 19664 0.08 + . g173 C.avellana_Jefferson_00008 AUGUSTUS transcript 17156 19664 0.08 + . g173.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 17156 17156 . + . transcript_id "g173.t1"; gene_id "g173"; C.avellana_Jefferson_00008 AUGUSTUS exon 17156 19664 . + . transcript_id "g173.t1"; gene_id "g173"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 17205 17207 . + 0 transcript_id "g173.t1"; gene_id "g173"; C.avellana_Jefferson_00008 AUGUSTUS CDS 17205 19418 0.63 + 0 transcript_id "g173.t1"; gene_id "g173"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 19416 19418 . + 0 transcript_id "g173.t1"; gene_id "g173"; C.avellana_Jefferson_00008 AUGUSTUS tts 19664 19664 . + . transcript_id "g173.t1"; gene_id "g173"; # protein sequence = [MIHRNNESPLISTHLRSPNVREFLYSILFLLLVAGYLVRTHLLFVSRAYSELQTEFEKVKSLMIPSYMIELRKLLDRY # PTSELNSLWLKNLFLVALEQLGDSIEEIRGYASGGNMLWGGGPAYGVKSIRSKKKYLNINLIDLISIIPNPINPIAFSRNTRHLSHTSKEIYSLIRKR # KNVNGDWIDDKIESWVSNSDSIDDKEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGAIYLRYLVYIHKKYLMNYEFNTSCLAERR # IFLAHYQTITYSQTSCGANSFNFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLAENSYVPFITVFLNKFLDNKPKGFLIEDSDDIDDSDDID # RDLDTELELLTMTNALTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERRSTRNILVIASTHLPQKVDPALI # APNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNVRDLVALTNEALSISITQNKLIIDTDIIRSALHRQTWDLRSQVRSV # HDHGILFYQIGRAVAQNVLLSNCSIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDS # DLVHGLLEVEGTLVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEQYESEFEEGE] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g173 ### # start gene g174 C.avellana_Jefferson_00008 AUGUSTUS gene 24776 26339 0.33 + . g174 C.avellana_Jefferson_00008 AUGUSTUS transcript 24776 26339 0.33 + . g174.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 24776 24776 . + . transcript_id "g174.t1"; gene_id "g174"; C.avellana_Jefferson_00008 AUGUSTUS exon 24776 24934 . + . transcript_id "g174.t1"; gene_id "g174"; C.avellana_Jefferson_00008 AUGUSTUS exon 25851 25993 . + . transcript_id "g174.t1"; gene_id "g174"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 25885 25887 . + 0 transcript_id "g174.t1"; gene_id "g174"; C.avellana_Jefferson_00008 AUGUSTUS intron 25994 26090 0.9 + . transcript_id "g174.t1"; gene_id "g174"; C.avellana_Jefferson_00008 AUGUSTUS CDS 25885 25993 0.79 + 0 transcript_id "g174.t1"; gene_id "g174"; C.avellana_Jefferson_00008 AUGUSTUS CDS 26091 26200 0.94 + 2 transcript_id "g174.t1"; gene_id "g174"; C.avellana_Jefferson_00008 AUGUSTUS exon 26091 26339 . + . transcript_id "g174.t1"; gene_id "g174"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 26198 26200 . + 0 transcript_id "g174.t1"; gene_id "g174"; C.avellana_Jefferson_00008 AUGUSTUS tts 26339 26339 . + . transcript_id "g174.t1"; gene_id "g174"; # protein sequence = [MERVLSLKQGDILPLTSDLTPDFLFPIPRKKADAPVGSGDMNRMSIRYSALYLLHHQARPREYEITDRRLFN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g174 ### # start gene g175 C.avellana_Jefferson_00008 AUGUSTUS gene 26459 29341 0.02 - . g175 C.avellana_Jefferson_00008 AUGUSTUS transcript 26459 29341 0.02 - . g175.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 26459 26459 . - . transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS exon 26459 26716 . - . transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS exon 27878 28129 . - . transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 27926 27928 . - 0 transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS intron 28130 28210 0.49 - . transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS intron 28255 28313 0.25 - . transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS intron 28557 28919 0.42 - . transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS CDS 27926 28129 0.28 - 0 transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS CDS 28211 28254 0.25 - 2 transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS exon 28211 28254 . - . transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS CDS 28314 28556 0.29 - 2 transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS exon 28314 28556 . - . transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS CDS 28920 29256 0.75 - 0 transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS exon 28920 29341 . - . transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 29254 29256 . - 0 transcript_id "g175.t1"; gene_id "g175"; C.avellana_Jefferson_00008 AUGUSTUS tss 29341 29341 . - . transcript_id "g175.t1"; gene_id "g175"; # protein sequence = [MKKNDDQQTINEKALXPDSLTKDESKKDAMCVQLHQLKQHIRKEDSNFINEKERRSTNDQRESSTTRDRNEWRYADVS # AGFGFGFGCECFFRTFFSPLFLLAMGXPGIGMNGGSFHPLYDTLFPFDVLNPVLNPIYLSSPLRDPQSHLAFGDLIALAFIYRSDSDPSFLGVTSAEY # SYRGKVHLTSKRSSKRGEGKCTSRAREARNGATDLSVRDPELVTGAQTRRESGSKQEKQFCWQAAKGGSELKVFPSETSTSKRALIGVCSLRDRWKPL # F] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/3 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g175 ### # start gene g176 C.avellana_Jefferson_00008 AUGUSTUS gene 36926 39141 0.16 + . g176 C.avellana_Jefferson_00008 AUGUSTUS transcript 36926 39141 0.16 + . g176.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 36926 36926 . + . transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS exon 36926 37314 . + . transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 37114 37116 . + 0 transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS intron 37315 37831 0.46 + . transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS intron 37975 38630 0.62 + . transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS CDS 37114 37314 0.47 + 0 transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS CDS 37832 37974 0.55 + 0 transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS exon 37832 37974 . + . transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS CDS 38631 38919 0.74 + 1 transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS exon 38631 39141 . + . transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 38917 38919 . + 0 transcript_id "g176.t1"; gene_id "g176"; C.avellana_Jefferson_00008 AUGUSTUS tts 39141 39141 . + . transcript_id "g176.t1"; gene_id "g176"; # protein sequence = [MEQHDEEGKAAKVWRKIWEENKEISEKGRQXPNIPEGWNNMMKKARRRRYGGKSGKRTRRSLKREGKEIPEARSERXS # LLPLISSLYHIMGVYRRSQRLARKGCYTIPFDSTLLXGVSTSLARGWDSFTCIPASTTKSSGLNAPTTAVQPFLGFVESGFPFTHNGGAAPTRQAATG # HNALFAQQIHFEVDLFARPIVGMCTRYHKGPISQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g176 ### # start gene g177 C.avellana_Jefferson_00008 AUGUSTUS gene 41317 42001 0.09 - . g177 C.avellana_Jefferson_00008 AUGUSTUS transcript 41317 42001 0.09 - . g177.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 41317 41317 . - . transcript_id "g177.t1"; gene_id "g177"; C.avellana_Jefferson_00008 AUGUSTUS exon 41317 42001 . - . transcript_id "g177.t1"; gene_id "g177"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 41500 41502 . - 0 transcript_id "g177.t1"; gene_id "g177"; C.avellana_Jefferson_00008 AUGUSTUS CDS 41500 41958 0.83 - 0 transcript_id "g177.t1"; gene_id "g177"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 41956 41958 . - 0 transcript_id "g177.t1"; gene_id "g177"; C.avellana_Jefferson_00008 AUGUSTUS tss 42001 42001 . - . transcript_id "g177.t1"; gene_id "g177"; # protein sequence = [MNQTVTWSPVSRDSTIESSSQLLPILYGSDMMSMVDGTTSAPSETVMVDSKTVPNPAYLEWKKKDQILLSWLHTTMRP # TVFAQVIGYKTARSTWEALDRAYTSQTNARYYQIKHYLFNIRKGSYSITEYMDRIRRLTDELSLIQQPMXALPF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g177 ### # start gene g178 C.avellana_Jefferson_00008 AUGUSTUS gene 42756 44383 0.05 + . g178 C.avellana_Jefferson_00008 AUGUSTUS transcript 42756 44383 0.05 + . g178.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 42756 42756 . + . transcript_id "g178.t1"; gene_id "g178"; C.avellana_Jefferson_00008 AUGUSTUS exon 42756 43342 . + . transcript_id "g178.t1"; gene_id "g178"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 43008 43010 . + 0 transcript_id "g178.t1"; gene_id "g178"; C.avellana_Jefferson_00008 AUGUSTUS intron 43343 43610 1 + . transcript_id "g178.t1"; gene_id "g178"; C.avellana_Jefferson_00008 AUGUSTUS CDS 43008 43342 0.59 + 0 transcript_id "g178.t1"; gene_id "g178"; C.avellana_Jefferson_00008 AUGUSTUS CDS 43611 44163 0.74 + 1 transcript_id "g178.t1"; gene_id "g178"; C.avellana_Jefferson_00008 AUGUSTUS exon 43611 44383 . + . transcript_id "g178.t1"; gene_id "g178"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 44161 44163 . + 0 transcript_id "g178.t1"; gene_id "g178"; C.avellana_Jefferson_00008 AUGUSTUS tts 44383 44383 . + . transcript_id "g178.t1"; gene_id "g178"; # protein sequence = [MILPHTELPSPRKMFTESAILAFTADSVKAVESSVDLVDLVSSAYVDSFASSDHRLRSVAHPASTESLKEHKKLTLQS # LFSSLSSPSSLSELSHSLSSPSASANKATTDLSASPSSLAASPSPLNSGKMSFPFPMVNLFHTLAQALSDNNTFYPARKRRSKQMMLLEVRLIRPTXL # AQALSDNNTFYPARKRRSKQMMLLEVRLIRPTLKLPMPQCASIGTVQRARPKQANYQARPIAVASRAAYYETLANGFSSLSSKATSSFHEHSIGKLGX # SLNSSLADSGKKVLLLLFCFS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g178 ### # start gene g179 C.avellana_Jefferson_00008 AUGUSTUS gene 45236 46090 0.31 + . g179 C.avellana_Jefferson_00008 AUGUSTUS transcript 45236 46090 0.31 + . g179.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 45236 45236 . + . transcript_id "g179.t1"; gene_id "g179"; C.avellana_Jefferson_00008 AUGUSTUS exon 45236 46090 . + . transcript_id "g179.t1"; gene_id "g179"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 45404 45406 . + 0 transcript_id "g179.t1"; gene_id "g179"; C.avellana_Jefferson_00008 AUGUSTUS CDS 45404 45880 0.7 + 0 transcript_id "g179.t1"; gene_id "g179"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 45878 45880 . + 0 transcript_id "g179.t1"; gene_id "g179"; C.avellana_Jefferson_00008 AUGUSTUS tts 46090 46090 . + . transcript_id "g179.t1"; gene_id "g179"; # protein sequence = [MLQPKLRRWLQTGSTTKQAKAPYAKHSTQSQGKHRMKRAYSIPHDPIKGXATRCIKADGATVNIKLDKQKERELRSQE # RAKPRQGMLQPKLRRWLQTGSNTKQAKAPYAKHSTQSQGKHRMKRAYSIPHDPIKGIGFSFIFLFCFTTNSCSPKRGSLP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g179 ### # start gene g180 C.avellana_Jefferson_00008 AUGUSTUS gene 51428 53041 0.05 - . g180 C.avellana_Jefferson_00008 AUGUSTUS transcript 51428 53041 0.05 - . g180.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 51428 51428 . - . transcript_id "g180.t1"; gene_id "g180"; C.avellana_Jefferson_00008 AUGUSTUS exon 51428 51770 . - . transcript_id "g180.t1"; gene_id "g180"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 51540 51542 . - 0 transcript_id "g180.t1"; gene_id "g180"; C.avellana_Jefferson_00008 AUGUSTUS intron 51771 52762 0.15 - . transcript_id "g180.t1"; gene_id "g180"; C.avellana_Jefferson_00008 AUGUSTUS CDS 51540 51770 0.11 - 0 transcript_id "g180.t1"; gene_id "g180"; C.avellana_Jefferson_00008 AUGUSTUS CDS 52763 52948 0.25 - 0 transcript_id "g180.t1"; gene_id "g180"; C.avellana_Jefferson_00008 AUGUSTUS exon 52763 53041 . - . transcript_id "g180.t1"; gene_id "g180"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 52946 52948 . - 0 transcript_id "g180.t1"; gene_id "g180"; C.avellana_Jefferson_00008 AUGUSTUS tss 53041 53041 . - . transcript_id "g180.t1"; gene_id "g180"; # protein sequence = [MIELRNDDLAKGVGVKASFLCLEXVTKRLADDRERSDWQMIELRNDDLAKGVGVKASFLCLENPHFPHWIQVLHEPAA # HNHGRXPHFPHWIQVLHEPAAHNHGREEGRFPSRLDYPIRGTKPNGIVDQIMEASLETLN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g180 ### # start gene g181 C.avellana_Jefferson_00008 AUGUSTUS gene 54226 54766 0.08 + . g181 C.avellana_Jefferson_00008 AUGUSTUS transcript 54226 54766 0.08 + . g181.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 54226 54226 . + . transcript_id "g181.t1"; gene_id "g181"; C.avellana_Jefferson_00008 AUGUSTUS exon 54226 54766 . + . transcript_id "g181.t1"; gene_id "g181"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 54454 54456 . + 0 transcript_id "g181.t1"; gene_id "g181"; C.avellana_Jefferson_00008 AUGUSTUS CDS 54454 54660 0.7 + 0 transcript_id "g181.t1"; gene_id "g181"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 54658 54660 . + 0 transcript_id "g181.t1"; gene_id "g181"; C.avellana_Jefferson_00008 AUGUSTUS tts 54766 54766 . + . transcript_id "g181.t1"; gene_id "g181"; # protein sequence = [MRKNSNAFSVARSTEEFSSTASVHGAEMNSRWCLCSVPLKILVLXRMLSRLPDQLKNSLPQLLFTELK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g181 ### # start gene g182 C.avellana_Jefferson_00008 AUGUSTUS gene 55566 56273 0.09 + . g182 C.avellana_Jefferson_00008 AUGUSTUS transcript 55566 56273 0.09 + . g182.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 55566 55566 . + . transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS exon 55566 55709 . + . transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 55602 55604 . + 0 transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS intron 55710 55791 0.5 + . transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS intron 55895 55965 0.64 + . transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS CDS 55602 55709 0.54 + 0 transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS CDS 55792 55894 0.5 + 0 transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS exon 55792 55894 . + . transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS CDS 55966 56243 0.83 + 2 transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS exon 55966 56273 . + . transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 56241 56243 . + 0 transcript_id "g182.t1"; gene_id "g182"; C.avellana_Jefferson_00008 AUGUSTUS tts 56273 56273 . + . transcript_id "g182.t1"; gene_id "g182"; # protein sequence = [MVTYVMKGKIDHPNLTVQVSDWLKYPGPLPQALSRNGXPWPFAPSSEQECGEDSDSTITSLPETASMSANPQLETAQS # RSNRRCRNGMLKVEHRAESNPYLYFFSGELAFLSFSQVFPICLDKPDMLTKLLEVSSLGAAFLLPIFAGLAPPSSSVPTSKRRR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g182 ### # start gene g183 C.avellana_Jefferson_00008 AUGUSTUS gene 61533 65071 0.02 - . g183 C.avellana_Jefferson_00008 AUGUSTUS transcript 61533 65071 0.02 - . g183.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 61533 61533 . - . transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS exon 61533 61929 . - . transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 61682 61684 . - 0 transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS intron 61930 62237 0.23 - . transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS intron 62440 62796 0.67 - . transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS intron 62900 64201 0.46 - . transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS intron 64357 64694 0.42 - . transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS CDS 61682 61929 0.72 - 2 transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS CDS 62238 62439 0.61 - 0 transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS exon 62238 62439 . - . transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS CDS 62797 62899 0.77 - 1 transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS exon 62797 62899 . - . transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS CDS 64202 64356 0.42 - 0 transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS exon 64202 64356 . - . transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS CDS 64695 65048 0.41 - 0 transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS exon 64695 65071 . - . transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 65046 65048 . - 0 transcript_id "g183.t1"; gene_id "g183"; C.avellana_Jefferson_00008 AUGUSTUS tss 65071 65071 . - . transcript_id "g183.t1"; gene_id "g183"; # protein sequence = [MIWKGSSITRKKPCRLCPALLPIILRGQAESXGFSSIMIWKGSSITRKKPCRLCPALLPIILRGQAESFSPPLSFKAR # FDSSSGXRGQAESFSPPLSFKARFDSSSGVDLFFRDPIPLEAXPFRLKYSSIGGFIFLSLAYPSVGSPSVGADYSGHWNIYRYGAFRSIFRWLPKAFL # DSILGSEARVVGPSQAGGHSTVASGXRSASIRARHYELAPAIAASPHGNGASPNLLNRLVTAGAIGAXAIAASPHGNGASPNLLNRLVTAGAIGAGQV # DGSEAFELPIYYRPLXPSSMFGCVSAGVHWSGQVDGSEAFELPIYYRPLHKTPTLLLPIHVATRPAVDLTYDRSHFMEP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g183 ### # start gene g184 C.avellana_Jefferson_00008 AUGUSTUS gene 65446 65998 0.52 + . g184 C.avellana_Jefferson_00008 AUGUSTUS transcript 65446 65998 0.52 + . g184.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 65446 65446 . + . transcript_id "g184.t1"; gene_id "g184"; C.avellana_Jefferson_00008 AUGUSTUS exon 65446 65688 . + . transcript_id "g184.t1"; gene_id "g184"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 65563 65565 . + 0 transcript_id "g184.t1"; gene_id "g184"; C.avellana_Jefferson_00008 AUGUSTUS intron 65689 65803 0.93 + . transcript_id "g184.t1"; gene_id "g184"; C.avellana_Jefferson_00008 AUGUSTUS CDS 65563 65688 0.93 + 0 transcript_id "g184.t1"; gene_id "g184"; C.avellana_Jefferson_00008 AUGUSTUS CDS 65804 65881 0.93 + 0 transcript_id "g184.t1"; gene_id "g184"; C.avellana_Jefferson_00008 AUGUSTUS exon 65804 65998 . + . transcript_id "g184.t1"; gene_id "g184"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 65879 65881 . + 0 transcript_id "g184.t1"; gene_id "g184"; C.avellana_Jefferson_00008 AUGUSTUS tts 65998 65998 . + . transcript_id "g184.t1"; gene_id "g184"; # protein sequence = [MGLGTGYGTEGRSPFPMPSMLADPTPLRARQQTKPPLGTGNQIAILSLGPLQGTKGHTPTSAYSKPD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g184 ### # start gene g185 C.avellana_Jefferson_00008 AUGUSTUS gene 69786 71141 0.09 + . g185 C.avellana_Jefferson_00008 AUGUSTUS transcript 69786 71141 0.09 + . g185.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 69786 69786 . + . transcript_id "g185.t1"; gene_id "g185"; C.avellana_Jefferson_00008 AUGUSTUS exon 69786 70128 . + . transcript_id "g185.t1"; gene_id "g185"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 69852 69854 . + 0 transcript_id "g185.t1"; gene_id "g185"; C.avellana_Jefferson_00008 AUGUSTUS intron 70129 70374 0.49 + . transcript_id "g185.t1"; gene_id "g185"; C.avellana_Jefferson_00008 AUGUSTUS CDS 69852 70128 0.51 + 0 transcript_id "g185.t1"; gene_id "g185"; C.avellana_Jefferson_00008 AUGUSTUS CDS 70375 70517 0.63 + 2 transcript_id "g185.t1"; gene_id "g185"; C.avellana_Jefferson_00008 AUGUSTUS exon 70375 71141 . + . transcript_id "g185.t1"; gene_id "g185"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 70515 70517 . + 0 transcript_id "g185.t1"; gene_id "g185"; C.avellana_Jefferson_00008 AUGUSTUS tts 71141 71141 . + . transcript_id "g185.t1"; gene_id "g185"; # protein sequence = [MRQRLRQRFVEDTVPESRKATVPEKKERYINFEQPLRDRGCHKPRSPTEIFXVPESRKATVPEKKERYINFEQPLRDR # GCHKPRSPTEIFDIGLAAPICFKLMDTSSSYLRILPLGFIDLHADKLFTSGSVTRVTGALR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g185 ### # start gene g186 C.avellana_Jefferson_00008 AUGUSTUS gene 71366 72755 0.04 + . g186 C.avellana_Jefferson_00008 AUGUSTUS transcript 71366 72755 0.04 + . g186.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 71366 71366 . + . transcript_id "g186.t1"; gene_id "g186"; C.avellana_Jefferson_00008 AUGUSTUS exon 71366 71718 . + . transcript_id "g186.t1"; gene_id "g186"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 71422 71424 . + 0 transcript_id "g186.t1"; gene_id "g186"; C.avellana_Jefferson_00008 AUGUSTUS intron 71719 72217 0.87 + . transcript_id "g186.t1"; gene_id "g186"; C.avellana_Jefferson_00008 AUGUSTUS CDS 71422 71718 0.9 + 0 transcript_id "g186.t1"; gene_id "g186"; C.avellana_Jefferson_00008 AUGUSTUS CDS 72218 72652 0.76 + 0 transcript_id "g186.t1"; gene_id "g186"; C.avellana_Jefferson_00008 AUGUSTUS exon 72218 72755 . + . transcript_id "g186.t1"; gene_id "g186"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 72650 72652 . + 0 transcript_id "g186.t1"; gene_id "g186"; C.avellana_Jefferson_00008 AUGUSTUS tts 72755 72755 . + . transcript_id "g186.t1"; gene_id "g186"; # protein sequence = [MATRTLFGSRFQNAWIALPGRVEPFNSASYVVVASSSFPDRTLRSLSLSNHLVEKEEIEDHSRILSDLCQHRTRSPLL # KQKGNPSELKIPFGFLIVEGADSGPPEFVCKMSLQECQSTEPPGLRIRXPRICMQDEPTGVPINRATRFENKVGFLDLVAGESLIKEQILERFFIDLV # AGESLIKERAAARFNDLVGSTDVVAGEPLLLLPRRFRQNRAWMELNKIWRTNTKXPPGLMIWWDPQM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g186 ### # start gene g187 C.avellana_Jefferson_00008 AUGUSTUS gene 75184 77441 0.03 - . g187 C.avellana_Jefferson_00008 AUGUSTUS transcript 75184 77441 0.03 - . g187.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 75184 75184 . - . transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS exon 75184 76214 . - . transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 75365 75367 . - 0 transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS intron 76215 76294 0.41 - . transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS intron 76417 76507 0.47 - . transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS intron 76640 76716 0.9 - . transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS intron 76881 76954 1 - . transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS CDS 75365 76214 0.76 - 1 transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS CDS 76295 76416 0.33 - 0 transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS exon 76295 76416 . - . transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS CDS 76508 76639 0.59 - 0 transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS exon 76508 76639 . - . transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS CDS 76717 76880 0.92 - 2 transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS exon 76717 76880 . - . transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS CDS 76955 77240 1 - 0 transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS exon 76955 77441 . - . transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 77238 77240 . - 0 transcript_id "g187.t1"; gene_id "g187"; C.avellana_Jefferson_00008 AUGUSTUS tss 77441 77441 . - . transcript_id "g187.t1"; gene_id "g187"; # protein sequence = [MPTSCALFTLEGKNGPQAGILRPERIRYAWDPNKKLFSAFDLDFFESKIGPVLPLLDLPVASGRLGQVLEGGGKQRIF # AIGNYINQRLLKPXREFVLPLLDLPMASGRLGQVLEGGGKQRIFAIGNYINQRLLKPVHDWLMEVLARIPMDIGGHCTSSLRYFRPSLTAHSRRRXSY # SFDLKSATDRWPLYFLFEGSHLILRVSSLPAEHTPSLRPDGCEPQVSLPKVLNIGPCRGYPCRRFSTLARVGGAGYRVLARLDHYRNRHDSRVYAMYT # KPLAGPTLEWWLGRGAPLNPYLRAYIIXXXXXRHDSRVYAMYTKPLAGPTLEWWLGRGAPLNPYLRAYIIHFLREEMRPKELRLIPDDLFATEKVKDF # LEWSILRSWMKEWLAYSHRYYGTAMQPDVQISSFFDTAVLMRSWRIERKDANLTRFGLLWRVYDLVAVKGVSFRIPILEGHLVLSNGPWLLGGISGQS # FMVQSRGTTQPRAGKGVVAPGVTLWPPLPDPVTKVIRYIRLPSLLET] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g187 ### # start gene g188 C.avellana_Jefferson_00008 AUGUSTUS gene 82246 82831 0.22 + . g188 C.avellana_Jefferson_00008 AUGUSTUS transcript 82246 82831 0.22 + . g188.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 82246 82246 . + . transcript_id "g188.t1"; gene_id "g188"; C.avellana_Jefferson_00008 AUGUSTUS exon 82246 82831 . + . transcript_id "g188.t1"; gene_id "g188"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 82322 82324 . + 0 transcript_id "g188.t1"; gene_id "g188"; C.avellana_Jefferson_00008 AUGUSTUS CDS 82322 82645 0.98 + 0 transcript_id "g188.t1"; gene_id "g188"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 82643 82645 . + 0 transcript_id "g188.t1"; gene_id "g188"; C.avellana_Jefferson_00008 AUGUSTUS tts 82831 82831 . + . transcript_id "g188.t1"; gene_id "g188"; # protein sequence = [MKEGKVGKEVACAVPDKLYVLSLIAERTACGTAYGTACGTDCSSCLLLSCCRLRVVWRRRLHPILGXLLAVRTALLAY # YFLVVGCGLYGDAGSTPYWGVGLIVLKGI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g188 ### # start gene g189 C.avellana_Jefferson_00008 AUGUSTUS gene 83066 83604 0.18 + . g189 C.avellana_Jefferson_00008 AUGUSTUS transcript 83066 83604 0.18 + . g189.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 83066 83066 . + . transcript_id "g189.t1"; gene_id "g189"; C.avellana_Jefferson_00008 AUGUSTUS exon 83066 83604 . + . transcript_id "g189.t1"; gene_id "g189"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 83148 83150 . + 0 transcript_id "g189.t1"; gene_id "g189"; C.avellana_Jefferson_00008 AUGUSTUS CDS 83148 83441 0.99 + 0 transcript_id "g189.t1"; gene_id "g189"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 83439 83441 . + 0 transcript_id "g189.t1"; gene_id "g189"; C.avellana_Jefferson_00008 AUGUSTUS tts 83604 83604 . + . transcript_id "g189.t1"; gene_id "g189"; # protein sequence = [MIKLELISCQASSDATAQLSSDTSRTVLYLGTALLLDLFTGLPLAGGPAFSGASSETGGICTGLLVFLPSFQGPFCPI # ISLPYLLLAVWPNGLLYSA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g189 ### # start gene g190 C.avellana_Jefferson_00008 AUGUSTUS gene 85748 91111 0.05 - . g190 C.avellana_Jefferson_00008 AUGUSTUS transcript 85748 91111 0.05 - . g190.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 85748 85748 . - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS exon 85748 86146 . - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 85908 85910 . - 0 transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS intron 86147 86636 0.69 - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS intron 86798 87846 0.62 - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS intron 88473 88734 0.7 - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS intron 88902 89372 0.67 - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS intron 89581 89733 0.48 - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS intron 89900 90238 0.58 - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS intron 90382 90591 0.77 - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS CDS 85908 86146 0.96 - 2 transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS CDS 86637 86797 0.97 - 1 transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS exon 86637 86797 . - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS CDS 87847 88472 0.67 - 0 transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS exon 87847 88472 . - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS CDS 88735 88901 0.77 - 2 transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS exon 88735 88901 . - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS CDS 89373 89580 0.37 - 0 transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS exon 89373 89580 . - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS CDS 89734 89899 0.59 - 1 transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS exon 89734 89899 . - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS CDS 90239 90381 0.77 - 0 transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS exon 90239 90381 . - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS CDS 90592 90978 0.87 - 0 transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS exon 90592 91111 . - . transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 90976 90978 . - 0 transcript_id "g190.t1"; gene_id "g190"; C.avellana_Jefferson_00008 AUGUSTUS tss 91111 91111 . - . transcript_id "g190.t1"; gene_id "g190"; # protein sequence = [MRLTTRIQTRVSYKVVWTAAERVYPERRESKLRMQCKTLFQPTSNGLRSRNLNNDKGNITQADXRVYPERRESKLRMQ # CKTLFQPTSNGLRSRNLNNDKGNITQADQLSIIDGVTITSRKAVALFPYTLYTLPAADYEEEGGRSAIATRSITFDAPYILLNMRRNFPANTRLRGTT # XSGFVLEGGSLSPRDSSLAGPMTPLGIYSRYSMLMVPERERKGAPSEGSLPRNPHEKVKAKFPLQHSRGIPLTHESNHQQEVRGTPLESRITLQIIPV # QLTKPDFPVLSLGTDQRKRQVSPSASEYKAVKRTANKEKATSERQGKERLPMVGLPLLLLSSAGKLRIVMPGQTLSYDASERLKHILHPICQSSLKPC # NSRILKGKKQANSRIFRRXPICQSSLKPCNSRILKGKKQANSRIFRRVPEKPYELTFHLTRAIGPVKVTSLTNIHGLLRGFFNQPKPATESLISTTYK # LRDAPFPMAEEGCKLEGLGQDILHLDRRCSAXGLLRGFFNQPKPATESLISTTYKLRDAPFPMAEEGCKLEGLGQDILHLDRRCSALSVGKIPLHGLL # FIHRNRKLCLKLSPSPMKGILRLKAMDEEMKAIEKNKTWTLVKPPPDAHIIAHENAWFWVFTDSFQGAELTYLRIFCASCTLKDKGLPLLNQGRGLFG # FIFEHLPEDSVTRDSVNAAPLTGGIARAKSST] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g190 ### # start gene g191 C.avellana_Jefferson_00008 AUGUSTUS gene 95260 98311 0.05 - . g191 C.avellana_Jefferson_00008 AUGUSTUS transcript 95260 98311 0.05 - . g191.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 95260 95260 . - . transcript_id "g191.t1"; gene_id "g191"; C.avellana_Jefferson_00008 AUGUSTUS exon 95260 95821 . - . transcript_id "g191.t1"; gene_id "g191"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 95476 95478 . - 0 transcript_id "g191.t1"; gene_id "g191"; C.avellana_Jefferson_00008 AUGUSTUS CDS 95476 95808 0.72 - 0 transcript_id "g191.t1"; gene_id "g191"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 95806 95808 . - 0 transcript_id "g191.t1"; gene_id "g191"; C.avellana_Jefferson_00008 AUGUSTUS exon 98168 98311 . - . transcript_id "g191.t1"; gene_id "g191"; C.avellana_Jefferson_00008 AUGUSTUS tss 98311 98311 . - . transcript_id "g191.t1"; gene_id "g191"; # protein sequence = [MTFLCLKPLFAASSRGHFWSERYAAGLXPVGVRKSVFMTFLCLKPLFAASSRGHFWSERYAAGLVGIDRGLETYESTG # SAGTTQGYGYGTEMEARECWINRRYFLCREHQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g191 ### # start gene g192 C.avellana_Jefferson_00008 AUGUSTUS gene 102537 103201 0.15 - . g192 C.avellana_Jefferson_00008 AUGUSTUS transcript 102537 103201 0.15 - . g192.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 102537 102537 . - . transcript_id "g192.t1"; gene_id "g192"; C.avellana_Jefferson_00008 AUGUSTUS exon 102537 103201 . - . transcript_id "g192.t1"; gene_id "g192"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 102698 102700 . - 0 transcript_id "g192.t1"; gene_id "g192"; C.avellana_Jefferson_00008 AUGUSTUS CDS 102698 103165 0.42 - 0 transcript_id "g192.t1"; gene_id "g192"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 103163 103165 . - 0 transcript_id "g192.t1"; gene_id "g192"; C.avellana_Jefferson_00008 AUGUSTUS tss 103201 103201 . - . transcript_id "g192.t1"; gene_id "g192"; # protein sequence = [MGAFFTLFTLVTGGFRGRPMWGTFWVWDARLTSVFISFLIYLGALRFQKLPVEPASISIRAGPIDIPIIKSSVNWWNT # SHQPGSISRSGTSIHVPMLIPILSNFANFPFSTRIFFVLETRLPIPSFLESPLTEEIEAREGIPKPSSLAESFCIYG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g192 ### # start gene g193 C.avellana_Jefferson_00008 AUGUSTUS gene 106785 107381 0.13 - . g193 C.avellana_Jefferson_00008 AUGUSTUS transcript 106785 107381 0.13 - . g193.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 106785 106785 . - . transcript_id "g193.t1"; gene_id "g193"; C.avellana_Jefferson_00008 AUGUSTUS exon 106785 107381 . - . transcript_id "g193.t1"; gene_id "g193"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 106982 106984 . - 0 transcript_id "g193.t1"; gene_id "g193"; C.avellana_Jefferson_00008 AUGUSTUS CDS 106982 107317 0.99 - 0 transcript_id "g193.t1"; gene_id "g193"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 107315 107317 . - 0 transcript_id "g193.t1"; gene_id "g193"; C.avellana_Jefferson_00008 AUGUSTUS tss 107381 107381 . - . transcript_id "g193.t1"; gene_id "g193"; # protein sequence = [MGIPCPLRVSKSGCCPSSEEGFAAKTGYAESELRDARSRLSPSADSQATAKRTGDCPLRAHHLPERDWTVALSALESD # SVEIGEMALPLFESEMIVTFLTAHSSFKPSTSS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g193 ### # start gene g194 C.avellana_Jefferson_00008 AUGUSTUS gene 108842 109281 0.26 - . g194 C.avellana_Jefferson_00008 AUGUSTUS transcript 108842 109281 0.26 - . g194.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 108842 108842 . - . transcript_id "g194.t1"; gene_id "g194"; C.avellana_Jefferson_00008 AUGUSTUS exon 108842 109281 . - . transcript_id "g194.t1"; gene_id "g194"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 108945 108947 . - 0 transcript_id "g194.t1"; gene_id "g194"; C.avellana_Jefferson_00008 AUGUSTUS CDS 108945 109262 0.79 - 0 transcript_id "g194.t1"; gene_id "g194"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 109260 109262 . - 0 transcript_id "g194.t1"; gene_id "g194"; C.avellana_Jefferson_00008 AUGUSTUS tss 109281 109281 . - . transcript_id "g194.t1"; gene_id "g194"; # protein sequence = [MKGLCAIKTFNSKRHQQTWKKSKPRLSQESWTWWVKPPLGTKVSHKKQGAKRVFTPPLPLLPARGLLSTKADLLTGFG # KAYLDYSKTMXSSLAATTSSRPIVHEG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g194 ### # start gene g195 C.avellana_Jefferson_00008 AUGUSTUS gene 110536 111683 0.15 + . g195 C.avellana_Jefferson_00008 AUGUSTUS transcript 110536 111683 0.15 + . g195.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 110536 110536 . + . transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS exon 110536 110983 . + . transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 110700 110702 . + 0 transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS intron 110984 111160 0.99 + . transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS intron 111347 111476 0.63 + . transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS CDS 110700 110983 0.99 + 0 transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS CDS 111161 111346 0.96 + 1 transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS exon 111161 111346 . + . transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS CDS 111477 111558 0.62 + 1 transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS exon 111477 111683 . + . transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 111556 111558 . + 0 transcript_id "g195.t1"; gene_id "g195"; C.avellana_Jefferson_00008 AUGUSTUS tts 111683 111683 . + . transcript_id "g195.t1"; gene_id "g195"; # protein sequence = [MAVDDGQVLRRNQNDLVDLVFDILLLRMKISEVEDEMRSASRARXKARRVGMAVDDGQVLRRNQNDLVDLVFDILLLR # MKISEVEDEMRSASRASTAKEASEGEERALTYIVGFQTLACLAGMPVRXAKEASEGEERALTYIVGFQTLACLAGMPVRSSSSSSNASHSQELARCGN # IVQFIGL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g195 ### # start gene g196 C.avellana_Jefferson_00008 AUGUSTUS gene 112027 114701 0.01 - . g196 C.avellana_Jefferson_00008 AUGUSTUS transcript 112027 114701 0.01 - . g196.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 112027 112027 . - . transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS exon 112027 112565 . - . transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 112109 112111 . - 0 transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS intron 112566 112677 0.74 - . transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS intron 113222 113299 0.69 - . transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS intron 113403 113888 0.29 - . transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS CDS 112109 112565 0.54 - 1 transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS CDS 112678 113221 0.53 - 2 transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS exon 112678 113221 . - . transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS CDS 113300 113402 0.68 - 0 transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS exon 113300 113402 . - . transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS CDS 113889 114143 0.47 - 0 transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS exon 113889 114701 . - . transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 114141 114143 . - 0 transcript_id "g196.t1"; gene_id "g196"; C.avellana_Jefferson_00008 AUGUSTUS tss 114701 114701 . - . transcript_id "g196.t1"; gene_id "g196"; # protein sequence = [MEIPEQEILSRTDGHDTDLPIFRDRTEDLWYLQVQSAYPGTEQEPVVPFRLQSLRTNPWDLRSSVNFVGAHNPEADKW # EDWTKRVSLIEVYDKDMSEEAFAAFVLYLISQNIIPSPPGTLAQLYMGLSEYATELRDRNLQIAPKSPGSVLDLYGPFWLLILWAYERFPPVAPRVTL # EAEEMRNRSRAEKYADLTPPTLSTGECFKILIVEEILKWRPYREKXEAEEMRNRSRAEKYADLTPPTLSTGECFKILIVEEILKWRPYREKVFFGDKD # ENEIIYLPSGHITRKCFWFLRMLXAKSASEGSRTWSHGKVPVTLKPPFITVYKPHRVAKQFGLDQVIPYPIAESLTDVRYTLSTYFKLAPSSTDIFMP # SRRGRIHFCTRGTWQVGSLSQERIDEVADYLNRRDRYMAGKEAVPXLGKLGPFHKKELMRWPIISIVEIDIWLVKRLFQV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g196 ### # start gene g197 C.avellana_Jefferson_00008 AUGUSTUS gene 115176 115666 0.13 + . g197 C.avellana_Jefferson_00008 AUGUSTUS transcript 115176 115666 0.13 + . g197.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 115176 115176 . + . transcript_id "g197.t1"; gene_id "g197"; C.avellana_Jefferson_00008 AUGUSTUS exon 115176 115666 . + . transcript_id "g197.t1"; gene_id "g197"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 115249 115251 . + 0 transcript_id "g197.t1"; gene_id "g197"; C.avellana_Jefferson_00008 AUGUSTUS CDS 115249 115443 0.62 + 0 transcript_id "g197.t1"; gene_id "g197"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 115441 115443 . + 0 transcript_id "g197.t1"; gene_id "g197"; C.avellana_Jefferson_00008 AUGUSTUS tts 115666 115666 . + . transcript_id "g197.t1"; gene_id "g197"; # protein sequence = [MLMLEELFPPPTRKRGGRLTAIHELGNDGLNVSTDAEGRFKLWLSHGMLIRNLCPVNARKREAM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g197 ### # start gene g198 C.avellana_Jefferson_00008 AUGUSTUS gene 119756 123747 0.03 + . g198 C.avellana_Jefferson_00008 AUGUSTUS transcript 119756 123747 0.03 + . g198.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 119756 119756 . + . transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS exon 119756 120012 . + . transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 119801 119803 . + 0 transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS intron 120013 120106 0.3 + . transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS intron 120315 120392 0.43 + . transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS intron 120521 122036 0.42 + . transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS intron 122114 123292 0.24 + . transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS CDS 119801 120012 0.32 + 0 transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS CDS 120107 120314 0.21 + 1 transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS exon 120107 120314 . + . transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS CDS 120393 120520 0.37 + 0 transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS exon 120393 120520 . + . transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS CDS 122037 122113 0.23 + 1 transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS exon 122037 122113 . + . transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS CDS 123293 123600 0.19 + 2 transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS exon 123293 123747 . + . transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 123598 123600 . + 0 transcript_id "g198.t1"; gene_id "g198"; C.avellana_Jefferson_00008 AUGUSTUS tts 123747 123747 . + . transcript_id "g198.t1"; gene_id "g198"; # protein sequence = [MRIGISWSLQIQQTEEAYVERDPVSIKPRGPVSTKPGFCRSHLFRSHHPQRDKETQSLGQNSQEDPVELLXIAKKIRL # SCCGTSDRPTRIGFRFGWCSDIPSRSYDSEAWVSRCAVCHRFCALFSAFSTIRGVDCSASGKKVVSSGEAVPAESEEDAKTXLSGAWIVQLVGRFFCS # AGCTPLERPARSAPLAALAAVGDSAKDHKGQLEKASPSTIIFWPSNNSPVVGDPYEHIAHFMAQCGNTSREDAWLLQQFVSSLSDAARTRYMHLEPES # ITSWNDMKKAFLNHFQYTAKKKGRARRSFQHDPKAQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g198 ### # start gene g199 C.avellana_Jefferson_00008 AUGUSTUS gene 127856 128691 0.46 + . g199 C.avellana_Jefferson_00008 AUGUSTUS transcript 127856 128691 0.46 + . g199.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 127856 127856 . + . transcript_id "g199.t1"; gene_id "g199"; C.avellana_Jefferson_00008 AUGUSTUS exon 127856 128691 . + . transcript_id "g199.t1"; gene_id "g199"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 128253 128255 . + 0 transcript_id "g199.t1"; gene_id "g199"; C.avellana_Jefferson_00008 AUGUSTUS CDS 128253 128636 0.96 + 0 transcript_id "g199.t1"; gene_id "g199"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 128634 128636 . + 0 transcript_id "g199.t1"; gene_id "g199"; C.avellana_Jefferson_00008 AUGUSTUS tts 128691 128691 . + . transcript_id "g199.t1"; gene_id "g199"; # protein sequence = [METATNYGSWPRQRPRRRRSEQQGTPRRRFYSWAAVSRSRGRSAPCPRRWVICSQKILLQSDLAGERSQFAAENKTAS # ERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRPGGIYLIPITRRGSP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g199 ### # start gene g200 C.avellana_Jefferson_00008 AUGUSTUS gene 136029 139871 0.01 - . g200 C.avellana_Jefferson_00008 AUGUSTUS transcript 136029 139871 0.01 - . g200.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 136029 136029 . - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS exon 136029 136497 . - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 136143 136145 . - 0 transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS intron 136498 137374 0.07 - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS intron 137406 137498 0.52 - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS intron 137591 137809 0.6 - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS intron 138262 138367 0.27 - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS intron 139526 139625 0.93 - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS CDS 136143 136497 0.13 - 1 transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS CDS 137375 137405 0.35 - 2 transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS exon 137375 137405 . - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS CDS 137499 137590 0.54 - 1 transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS exon 137499 137590 . - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS CDS 137810 138261 0.2 - 0 transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS exon 137810 138261 . - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS CDS 138368 139525 0.25 - 0 transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS exon 138368 139525 . - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS CDS 139626 139763 0.99 - 0 transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS exon 139626 139871 . - . transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 139761 139763 . - 0 transcript_id "g200.t1"; gene_id "g200"; C.avellana_Jefferson_00008 AUGUSTUS tss 139871 139871 . - . transcript_id "g200.t1"; gene_id "g200"; # protein sequence = [MGGTAAQKTNKERIEDLESQTSQIGGIVDGVAQLIECVDALEGGIQLIECVDALEGGIQVTKIRVPEPRAYGGARDAK # ELENFLFDMEQYFRAVKPDSEETKVSMATMYLTGDAKLWWRTKYDDIVNWRCTIDTWEDLKREMKTKFIPENVEYMARRKLRQXRTKYDDIVNWRCTI # DTWEDLKREMKTKFIPENVEYMARRKLRQLRHTGTVREYVKQFSALMLDIRDMSEKDKLFYFLEGLKPWAQAELQRQRVQDLASAQAAAERLTDYAAE # DASKKKGPSLILAGSRPSLTRLKVGETGNKVRVQALPSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSRGSVASNSGAKTIQCFLC # GGPHRVANCPQKRALNALQTTTQSEPTQDEEEEPTRGLYATECCQEAGRGGEEGPNQGANRLGLKLEKDSSRMKAVNSEAQPIDGIAKAVPVKLGQWE # GHMNLTAVPLDDFQVSLGMEFLREIKAVPMPFVGSSRPXEKDSSRMKAVNSEAQPIHGIAKAVPVKLGQWEGHMNLTAVPLDDFQVSLGMEFLREIKA # VPMPFVGSSRPVNLLFRLNRKSSKGPLRLANVEGEEGGGRIADSPGSLISAVSASXDNQNSSLPFPKRVLVTSPQERSDAQKELHMKNGKTLKEGVLH # ECPVEEEKGFEKKALSSXAQKELHMKNGKTLKEGVLHECPVEEEKGFEKKALSSARGTDMTSNSTISACCIEERG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g200 ### # start gene g201 C.avellana_Jefferson_00008 AUGUSTUS gene 141026 143157 0.04 + . g201 C.avellana_Jefferson_00008 AUGUSTUS transcript 141026 143157 0.04 + . g201.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 141026 141026 . + . transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS exon 141026 141302 . + . transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 141062 141064 . + 0 transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS intron 141303 141857 0.28 + . transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS intron 142046 142810 0.69 + . transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS CDS 141062 141302 0.91 + 0 transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS CDS 141858 142045 0.29 + 2 transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS exon 141858 142045 . + . transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS CDS 142811 143065 0.68 + 0 transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS exon 142811 143157 . + . transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 143063 143065 . + 0 transcript_id "g201.t1"; gene_id "g201"; C.avellana_Jefferson_00008 AUGUSTUS tts 143157 143157 . + . transcript_id "g201.t1"; gene_id "g201"; # protein sequence = [MPAGLTELLVGAIFGYDFAATWMTRXDSMPAGLTELLVGAIFGYDFAATWMTRSLGWVRFQLPYKGASSNRMGSSVTF # HTGDRNPFMSDRLPAAPGHMESLIDASLQAEGGKEERTLQSALPFFINTSSSAQALSDNNSSALARSSLLIYDHPQASRDKRPGVATPRPHQTLEVHX # QASRDKRPGVATPRPHQTLEVHSDASDFAIDGVLVQEGHPFAYESRKLNER] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g201 ### # start gene g202 C.avellana_Jefferson_00008 AUGUSTUS gene 149206 151766 0.08 + . g202 C.avellana_Jefferson_00008 AUGUSTUS transcript 149206 151766 0.08 + . g202.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 149206 149206 . + . transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS exon 149206 150029 . + . transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 149438 149440 . + 0 transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS intron 150030 151222 0.54 + . transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS intron 151284 151424 0.53 + . transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS CDS 149438 150029 0.56 + 0 transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS CDS 151223 151283 0.55 + 2 transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS exon 151223 151283 . + . transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS CDS 151425 151554 0.5 + 1 transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS exon 151425 151766 . + . transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 151552 151554 . + 0 transcript_id "g202.t1"; gene_id "g202"; C.avellana_Jefferson_00008 AUGUSTUS tts 151766 151766 . + . transcript_id "g202.t1"; gene_id "g202"; # protein sequence = [MGDSVARTPFRSNGKKAPQLSQLEEQARKQTFAQKQRSTQEKEMKSARLKGEEMKDCRSTLRSMPSTHQGKTEPRLFF # ITTLRFARXKQRSTQEKEMKSARLKGEEMKDCRSTLRSMPSTHQGKTEPRLFFITTLRFARYGDRSSEPAETRSLLLEPLLVVWGTVAHLSLKRRCSQ # VKKLLTSAATTXPFTKKKVQPGIEQARLVVDHANSIELSQNRCNERSEADAKPMSSPRAKPMSFPSEFALPSLPYGVGLFQGII] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g202 ### # start gene g203 C.avellana_Jefferson_00008 AUGUSTUS gene 152046 152650 0.12 + . g203 C.avellana_Jefferson_00008 AUGUSTUS transcript 152046 152650 0.12 + . g203.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 152046 152046 . + . transcript_id "g203.t1"; gene_id "g203"; C.avellana_Jefferson_00008 AUGUSTUS exon 152046 152650 . + . transcript_id "g203.t1"; gene_id "g203"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 152287 152289 . + 0 transcript_id "g203.t1"; gene_id "g203"; C.avellana_Jefferson_00008 AUGUSTUS CDS 152287 152481 0.99 + 0 transcript_id "g203.t1"; gene_id "g203"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 152479 152481 . + 0 transcript_id "g203.t1"; gene_id "g203"; C.avellana_Jefferson_00008 AUGUSTUS tts 152650 152650 . + . transcript_id "g203.t1"; gene_id "g203"; # protein sequence = [MGGSEAPGGPWLNSPDISTLRIRIEDERLMLASRSTSMEWVSDTSSLESSHFSEVGTKISGTTS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g203 ### # start gene g204 C.avellana_Jefferson_00008 AUGUSTUS gene 152702 154261 0.17 - . g204 C.avellana_Jefferson_00008 AUGUSTUS transcript 152702 154261 0.17 - . g204.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 152702 152702 . - . transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS exon 152702 153156 . - . transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 152822 152824 . - 0 transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS intron 153157 153312 1 - . transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS intron 153426 154025 0.57 - . transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS CDS 152822 153156 1 - 2 transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS CDS 153313 153425 0.57 - 1 transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS exon 153313 153425 . - . transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS CDS 154026 154186 0.93 - 0 transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS exon 154026 154261 . - . transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 154184 154186 . - 0 transcript_id "g204.t1"; gene_id "g204"; C.avellana_Jefferson_00008 AUGUSTUS tss 154261 154261 . - . transcript_id "g204.t1"; gene_id "g204"; # protein sequence = [MSSSDRIELSIDPGTWAPMDEDMVSLDPIEFNLADRRIHWRNPAIPAISLSRAPAPTFRSTGYRSMAYTPSTGFGSLS # DDKDAGSTVDSNAATFPAAPVTTSAYTAIDSAGSRSTDSTAIAADFVFATDAGDPATQSVMGSPAPRASVTLYAIGKSAASTGYRPRTGRDTGRNAFP # AFTASASALDVRVSVPTCASAVYPMP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g204 ### # start gene g205 C.avellana_Jefferson_00008 AUGUSTUS gene 157646 159805 0.04 + . g205 C.avellana_Jefferson_00008 AUGUSTUS transcript 157646 159805 0.04 + . g205.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 157646 157646 . + . transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS exon 157646 157911 . + . transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 157862 157864 . + 0 transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS intron 157912 158152 0.38 + . transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS intron 158382 158476 0.48 + . transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS intron 159020 159102 0.46 + . transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS CDS 157862 157911 0.55 + 0 transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS CDS 158153 158381 0.37 + 1 transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS exon 158153 158381 . + . transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS CDS 158477 159019 0.44 + 0 transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS exon 158477 159019 . + . transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS CDS 159103 159621 0.45 + 0 transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS exon 159103 159805 . + . transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 159619 159621 . + 0 transcript_id "g205.t1"; gene_id "g205"; C.avellana_Jefferson_00008 AUGUSTUS tts 159805 159805 . + . transcript_id "g205.t1"; gene_id "g205"; # protein sequence = [MMLVQSIKERGEVLNALPVLTRSRSVPAQMEGSSDEETDRRRPDKIDRLEAQLKALTDMVASLMADRTAQNPAPVQQP # AATAQPAQLPQHVQPDASQANSNPTVPSNNPVLITVADTQERTHEQDRAKNNVEDSKVASKLESPEEKLRTLQGIDSYGSTSFSDLCFFPDLKLPPKF # QTPDFDKYDGSGCPFTHLKVYCGEMCLYGDNEPLLIQQFQKSLTGPALRWFVELDRSKIHSWTDLANAFLXGDVFIWRQRAASYSAVSEKSYGSRSPL # KSPQIVLICKECKRGTTNLSELTHSVGGNWRXTDLANAFLTQYKFNTEIAPDRIDLQRMQKRNNESFRAYAQRWRELAAQVKPSMTEREMIGTFINTL # REPYLSHLVGHTKSSFADLVIVGDRVEDALKSGRLMDVQALQSLLEQPGAGTSHKRVTAKKQDPGSKEVQMIEA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g205 ### # start gene g206 C.avellana_Jefferson_00008 AUGUSTUS gene 162266 163260 0.27 + . g206 C.avellana_Jefferson_00008 AUGUSTUS transcript 162266 163260 0.27 + . g206.t1 C.avellana_Jefferson_00008 AUGUSTUS tss 162266 162266 . + . transcript_id "g206.t1"; gene_id "g206"; C.avellana_Jefferson_00008 AUGUSTUS exon 162266 163260 . + . transcript_id "g206.t1"; gene_id "g206"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 162283 162285 . + 0 transcript_id "g206.t1"; gene_id "g206"; C.avellana_Jefferson_00008 AUGUSTUS CDS 162283 163140 1 + 0 transcript_id "g206.t1"; gene_id "g206"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 163138 163140 . + 0 transcript_id "g206.t1"; gene_id "g206"; C.avellana_Jefferson_00008 AUGUSTUS tts 163260 163260 . + . transcript_id "g206.t1"; gene_id "g206"; # protein sequence = [MLAGQTLAANGQDVRYDILTHLKKIPALLSVYDALKMXQRGRPRMLAGQTLAANGQDVRYDILTHLKKIPALLSVYDA # LKMSAELRMPLVYALTNPEEFSNEVNQVEMRSSEPTYAECLALIKFTDDYLQPGLIKHNRPLFISGYLNGLEITRIMIDGGSAVNLLPLRMLKRLGIA # IHRLAPSNRLIQGFNQXGGSAVNLLPLRMLKRLGIAIHRLAPSNRLIQGFNQSRQRYLGIVRLELKIEELEDTIPLYVIDAETSNNVLLGQPWMHDNC # VVPSTYHQCFK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g206 ### # start gene g207 C.avellana_Jefferson_00008 AUGUSTUS gene 164694 166471 0.23 - . g207 C.avellana_Jefferson_00008 AUGUSTUS transcript 164694 166471 0.23 - . g207.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 164694 164694 . - . transcript_id "g207.t1"; gene_id "g207"; C.avellana_Jefferson_00008 AUGUSTUS exon 164694 165491 . - . transcript_id "g207.t1"; gene_id "g207"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 164962 164964 . - 0 transcript_id "g207.t1"; gene_id "g207"; C.avellana_Jefferson_00008 AUGUSTUS intron 165492 166094 0.76 - . transcript_id "g207.t1"; gene_id "g207"; C.avellana_Jefferson_00008 AUGUSTUS CDS 164962 165491 0.77 - 2 transcript_id "g207.t1"; gene_id "g207"; C.avellana_Jefferson_00008 AUGUSTUS CDS 166095 166440 0.83 - 0 transcript_id "g207.t1"; gene_id "g207"; C.avellana_Jefferson_00008 AUGUSTUS exon 166095 166471 . - . transcript_id "g207.t1"; gene_id "g207"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 166438 166440 . - 0 transcript_id "g207.t1"; gene_id "g207"; C.avellana_Jefferson_00008 AUGUSTUS tss 166471 166471 . - . transcript_id "g207.t1"; gene_id "g207"; # protein sequence = [MKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVXNVISITDGQI # CSETELFYRGIRPAINVGLSVSRGGSAAQLKAMKQVCEIPGDKGIFLAYCLSLSFCPGVGNCAGPSSPESPSASTGSSTSLAGHPSSETDSDKDIFFT # PKAEPDSASDSDKPIYRVPDEKESLGFLSEEEFPLVLDVRDLDRGVSLFRAPDMAAVDRAEIENLQKVFKDLERHRTASYSFYRFSKEYLXXXXXXXX # LWAKXRQSRNRESAESV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g207 ### # start gene g208 C.avellana_Jefferson_00008 AUGUSTUS gene 167077 171101 0.01 - . g208 C.avellana_Jefferson_00008 AUGUSTUS transcript 167077 171101 0.01 - . g208.t1 C.avellana_Jefferson_00008 AUGUSTUS tts 167077 167077 . - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS exon 167077 167922 . - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS stop_codon 167149 167151 . - 0 transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS intron 167923 168004 0.62 - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS intron 168199 168266 0.88 - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS intron 168334 168739 0.52 - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS intron 168850 169294 0.33 - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS intron 169701 169862 0.61 - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS intron 170008 170536 0.32 - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS intron 170762 170934 0.28 - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS CDS 167149 167922 0.53 - 0 transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS CDS 168005 168198 0.63 - 2 transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS exon 168005 168198 . - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS CDS 168267 168333 0.54 - 0 transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS exon 168267 168333 . - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS CDS 168740 168849 0.7 - 2 transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS exon 168740 168849 . - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS CDS 169295 169700 0.26 - 0 transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS exon 169295 169700 . - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS CDS 169863 170007 0.32 - 1 transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS exon 169863 170007 . - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS CDS 170537 170761 0.52 - 1 transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS exon 170537 170761 . - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS CDS 170935 171059 0.28 - 0 transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS exon 170935 171101 . - . transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS start_codon 171057 171059 . - 0 transcript_id "g208.t1"; gene_id "g208"; C.avellana_Jefferson_00008 AUGUSTUS tss 171101 171101 . - . transcript_id "g208.t1"; gene_id "g208"; # protein sequence = [MALRYTSRARKQGASIHALELRESTLRRPFLRSWLEPLFLASLIVELDRQDEKIELPCLKERPGVXIGIALWLDVQSD # RRARPAGRKDRVALPERKTGREERARFHRRGHRAGIGESRSKRXLPPSGYTFFKACVCVTLSLWRLWTDGAILLPSRSKRLNSNTIPSVSALDAFVDA # SELHQWVRQXRSILIFAIFFISDFKIFCILVCLCFGCFCGCFGASSVGAPVGFPSGCVIHLNGIIERCLVAYQRYNDLPFQNVEKXGFPSGCVIHLNG # IIERCLVAYQRYNDLPFQNVEKTCYMGFPPGVANGQGRVRTGSKPANFLVPVPVAVVVVGEAKQLHKSLRLGAGVIDLFGEFAYRFLAGRLQSVGALI # SHSPMKDNDSLVKLSGWVXCLLVLAGRLQSVGALISHSPMKDNDSLVKLSGWIEAPPTPFFVLPSSRSAHWKVRSTEKFHPARNIVEQPKSDDIPCGK # SRPLGYRGRLESIDYRVHQSKSQKRDSCAIHSSSMNQFQSKHRRRRNSWITFSTTLLRWSDRLSFVIYFLYFDRLNQPKAGFAFLGRAFPRXESIDYR # VHQSKSQKRDSCAIHSSSMNQFQSKHRRRRNSWITFSTTLLRWSDRLSFGIYFLYFDRLNQPKAGFAFLGRAFPRVGAMNTRVAFPSVTTRAKNVEVE # IPSLPLFAGSFSRPV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g208 ### # # ----- prediction on sequence number 9 (length = 171773, name = C.avellana_Jefferson_00009) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 9 on both strands # start gene g209 C.avellana_Jefferson_00009 AUGUSTUS gene 1560 4841 0.01 - . g209 C.avellana_Jefferson_00009 AUGUSTUS transcript 1560 4841 0.01 - . g209.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 1560 1560 . - . transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS exon 1560 2121 . - . transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 2008 2010 . - 0 transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS intron 2122 2861 0.93 - . transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS intron 3049 3383 1 - . transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS intron 3487 4571 0.9 - . transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS intron 4693 4764 0.74 - . transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS CDS 2008 2121 0.92 - 0 transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS CDS 2862 3048 0.98 - 1 transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS exon 2862 3048 . - . transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS CDS 3384 3486 0.91 - 2 transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS exon 3384 3486 . - . transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS CDS 4572 4692 0.73 - 0 transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS exon 4572 4692 . - . transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS CDS 4765 4815 0.23 - 0 transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS exon 4765 4841 . - . transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 4813 4815 . - 0 transcript_id "g209.t1"; gene_id "g209"; C.avellana_Jefferson_00009 AUGUSTUS tss 4841 4841 . - . transcript_id "g209.t1"; gene_id "g209"; # protein sequence = [MHMIYLPYCEDIRHVEELYSDSSGATPKSTDDQIKKAVALMKRIDLKDFSVCQFSNPALQRHYAVLQALALEELDMPE # MKDETLPDEEGMARPGVVGALEEFKCCVYGDNYDEESELVRNGKASETSKKRKAIAENAVKESASYDWSELADTGKLKDLTVVELKYYLTAHNLPVAG # KKEALISRILTHMGK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g209 ### # start gene g210 C.avellana_Jefferson_00009 AUGUSTUS gene 14909 15951 0.07 - . g210 C.avellana_Jefferson_00009 AUGUSTUS transcript 14909 15951 0.07 - . g210.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 14909 14909 . - . transcript_id "g210.t1"; gene_id "g210"; C.avellana_Jefferson_00009 AUGUSTUS exon 14909 15951 . - . transcript_id "g210.t1"; gene_id "g210"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 15001 15003 . - 0 transcript_id "g210.t1"; gene_id "g210"; C.avellana_Jefferson_00009 AUGUSTUS CDS 15001 15873 0.28 - 0 transcript_id "g210.t1"; gene_id "g210"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 15871 15873 . - 0 transcript_id "g210.t1"; gene_id "g210"; C.avellana_Jefferson_00009 AUGUSTUS tss 15951 15951 . - . transcript_id "g210.t1"; gene_id "g210"; # protein sequence = [MSASEDHAMTWVKDNVQSFLPETQIRGIAVGNEILGGTDSELAAALVGAVKNIYSAIEKLHLTDVVQISTAHSTNVFD # HSYPPSSCTFKENVVQYMKPLLEFFSQIGSPFCLNAYPFLAYVYDPENIDINYALFQSNPGIYDPKTDLHYDNMLDAIIDAGYVALEDAGFKKMEVIV # TETGWASNGDTNEAAATPNNARIYNYNLRKRLAKRKGTPLRPKRVLKAYVFAIFNENLKPGATSERNFGLFKADGNISYDIGFHGLKSSAADALLFSL # KVRGFLKPDEIDLFKC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g210 ### # start gene g211 C.avellana_Jefferson_00009 AUGUSTUS gene 23506 29337 0.04 + . g211 C.avellana_Jefferson_00009 AUGUSTUS transcript 23506 29337 0.04 + . g211.t1 C.avellana_Jefferson_00009 AUGUSTUS tss 23506 23506 . + . transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS exon 23506 25808 . + . transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 23551 23553 . + 0 transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS intron 25809 27042 1 + . transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS intron 27164 28015 0.99 + . transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS intron 28076 28166 0.96 + . transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS CDS 23551 25808 0.69 + 0 transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS CDS 27043 27163 1 + 1 transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS exon 27043 27163 . + . transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS CDS 28016 28075 0.96 + 0 transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS exon 28016 28075 . + . transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS CDS 28167 29120 1 + 0 transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS exon 28167 29337 . + . transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 29118 29120 . + 0 transcript_id "g211.t1"; gene_id "g211"; C.avellana_Jefferson_00009 AUGUSTUS tts 29337 29337 . + . transcript_id "g211.t1"; gene_id "g211"; # protein sequence = [MQMGQLEPILNKVDPSVQDMQMGLMGSVSNGPAAHQHSIANKQMGLADPLSSNHGLQRFSISNIQTIGMEPRGNNLGS # QQFITKQLGPMETMLNSAGSQQLHAPIKRKAPIEPPYSNTSPELLSIPNKRVAQLEHRPWLQHASGPNKKAVQMQSMPTTPGSQHSQTPNKKVYSKSG # SQRFSVSRSQTAVMQPSPKVQTESFESVRSKMRESLAAALVLASRQKEDKSMSPEKNSQSDSASSPGQIQKNTQPAAAAALDNVSVEPKVNLPSHEDY # SAQKSNNAESLPVKISAAENAGCYTQTRKSDGQETQSSNVFPVQDVSFSDDFFAKDELLQGNGLSWVMDSDMQVVGKREFHTAEEQKLGLDAQGRGQK # EVYQNPEIVAFEIEVELFKLFGGVNKKYKEKGRSLLFNLKDRSNPELRERVMSGDIPPERLCSMTAEELASKELSEWRIAKAEELAQMVVLPDEVDIR # RLVKKTHKGEFQVEVEQDDSVPMEVSVGTSSLTPRESKSKEMEAPHPSKADGVKDEVDASGEKSNLGVRNAPYTLTIPSSEGTDLLQGLMVDDVLKDA # EFLPPIVSLDEFMESLDSEPPFENLPVDAGKMTTNSDEDDLEPSSESKSSEPTSKDIDIATDEPEKVDATYSKLDRDQKSNDGDAGVKSSDDHADMKP # RDGRPDLKYNDSESTVEPSDTHADANSTGRHAEAKTIESYADLKASDRRAKSENVPPAGVSKGDFIWEGLLQLTTSAMASVIGIFKSGEKTTAKEWST # SLEIKGRVRLDAFEKFLQELPLSRSRAVMVMHFVVVEGSLESEHASLNEVADSYVLDERVGFAEPAPGVELYFCPPHNRTRETLGKILSTEHVEALNN # IDNGLIGVIVWRKAQLTSRISPNSSSQQKHKKQNITSRRHQETNMNSNFTPKPNPTRTNFEPSXXXXXXXXXXPPGFGPGARDEDDLPEFNFSGGAIP # SPQPKFAQNPPRGQRPIQSLSQTPSRPVDQMRELIQKYGQPKIGAPSGNWQDNRGFGVAVQPWNDDDDDIPEWQPQAPQQPVHGFHQPTLRPPHLVNQ # PPLGSVPQQSMMSLQSLQPQGTWWVPPVQGSGQQPNNIGCQPSLGQFYGAPVRNVGQPGAGWRQNPPKSRGF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g211 ### # start gene g212 C.avellana_Jefferson_00009 AUGUSTUS gene 29641 33391 0.06 - . g212 C.avellana_Jefferson_00009 AUGUSTUS transcript 29641 33391 0.06 - . g212.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 29641 29641 . - . transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS exon 29641 30749 . - . transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 30311 30313 . - 0 transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS intron 30750 31421 1 - . transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS intron 31826 32712 0.99 - . transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS CDS 30311 30749 1 - 1 transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS CDS 31422 31825 1 - 0 transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS exon 31422 31825 . - . transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS CDS 32713 32877 1 - 0 transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS exon 32713 33391 . - . transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 32875 32877 . - 0 transcript_id "g212.t1"; gene_id "g212"; C.avellana_Jefferson_00009 AUGUSTUS tss 33391 33391 . - . transcript_id "g212.t1"; gene_id "g212"; # protein sequence = [MGLDYYSVLKVDRNATDDDLKKAYRRLAMKWHPDKNPTNKKDAEAKFKQISEAYEVLSDPQKKAIYDQYGEEGLKDMP # PSGSGGFPFGNGSAGNGFNPRNAEDIFAEFFGSSPFGFGSSGPGRSMRFQSDGSGIFGGFGGSENIFRSYSEGSVPKKPPPVESKLPCSLVELYSGST # RKMKISRTLVNANGRQVPETEILTIDVKPGWKRGTKITFPDKGNEQHNQLPADLVFVIDEKPHDIYKRDGNDLIVNHRVSLAEALGGTTVNLTTLDGR # SLSIPVTDIVNPGYEVVVAREGMPIVKEPGNRGDLRIKFEVKFPTRLTPEQKAGLKRALGG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g212 ### # start gene g213 C.avellana_Jefferson_00009 AUGUSTUS gene 35436 39061 0.01 - . g213 C.avellana_Jefferson_00009 AUGUSTUS transcript 35436 39061 0.01 - . g213.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 35436 35436 . - . transcript_id "g213.t1"; gene_id "g213"; C.avellana_Jefferson_00009 AUGUSTUS exon 35436 35703 . - . transcript_id "g213.t1"; gene_id "g213"; C.avellana_Jefferson_00009 AUGUSTUS exon 36938 37096 . - . transcript_id "g213.t1"; gene_id "g213"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 36939 36941 . - 0 transcript_id "g213.t1"; gene_id "g213"; C.avellana_Jefferson_00009 AUGUSTUS intron 37097 37184 0.62 - . transcript_id "g213.t1"; gene_id "g213"; C.avellana_Jefferson_00009 AUGUSTUS CDS 36939 37096 0.4 - 2 transcript_id "g213.t1"; gene_id "g213"; C.avellana_Jefferson_00009 AUGUSTUS CDS 37185 38946 0.53 - 0 transcript_id "g213.t1"; gene_id "g213"; C.avellana_Jefferson_00009 AUGUSTUS exon 37185 39061 . - . transcript_id "g213.t1"; gene_id "g213"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 38944 38946 . - 0 transcript_id "g213.t1"; gene_id "g213"; C.avellana_Jefferson_00009 AUGUSTUS tss 39061 39061 . - . transcript_id "g213.t1"; gene_id "g213"; # protein sequence = [MLLCTVPTANYSNRICNIVRFFVNFSSSCALRTIDFVEESSTHDCDYIKLQRRMQNYATSGHFRKALETLSSMRNAPG # KPTVYDYNSLMYCCLRSRNVLLEELVEVYLGMKKFGPAPNALTFNVLLNGMLSLGNLKDMFFVANEMCGSGFVPSFTMLLKVLKKSLELGSLDCSLGV # FRLMLRLEYFPTEPVLNLLISLLTKARMIREAYSVLSALLGKGYFCSVYSYNLILWALCKSGQSYAALELFCLMKKKGIVQNVCTYTALVYGFGREGF # GDDLFRCLNIMQSDGFKPNLRTHTIIIKFLCDAGRVEVALEYLGRMEREGCDPDLITYNIILRELCHQDKVGKICQLVQVIDQRGFSPNPYTYAALAG # GMLKVGKIGMAHKILLDVISRGCTLDVAVYNIYFNCLCCDKRSREALSLLKSMMEDGFTPSIVCYNTILKGFCRENSIEEALELLDSFEWENKGPDVV # SFNTILSAACKQGNSSVIQRILFRMEHEGVELNVVSSTCLIQYFCTVGKFSECLKLMEYMMRNGPTPTTIALNMLLDKLCKNGLLRSAHGIFEYLRNT # ACVPDMTSYNILIRAFRREGALVGRETINCSPTEGFDAREWAYSKYCNLQYPIEGNVPERSGLCVHLIADN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/3 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g213 ### # start gene g214 C.avellana_Jefferson_00009 AUGUSTUS gene 43760 47341 0.24 - . g214 C.avellana_Jefferson_00009 AUGUSTUS transcript 43760 47341 0.24 - . g214.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 43760 43760 . - . transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS exon 43760 44281 . - . transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 44138 44140 . - 0 transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS intron 44282 45428 0.76 - . transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS intron 45549 45681 0.91 - . transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS CDS 44138 44281 0.91 - 0 transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS CDS 45429 45548 0.8 - 0 transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS exon 45429 45548 . - . transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS CDS 45682 46107 1 - 0 transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS exon 45682 46109 . - . transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 46105 46107 . - 0 transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS exon 47260 47341 . - . transcript_id "g214.t1"; gene_id "g214"; C.avellana_Jefferson_00009 AUGUSTUS tss 47341 47341 . - . transcript_id "g214.t1"; gene_id "g214"; # protein sequence = [MKPGVSSLNPYAASYIPLSQRDNKDRTYVTAKDYRSGNESVQFGAPEQLHRKFSLDPHAHGTERIPSREVFTVKSHPA # HGYGSSPQNVNQATDKQILDEEFDMDLQYLQMTFPGLSDQSLNDVYLANNGDLEATVDMLNQLEPHTNSLTSDYGTVQHSEKSAGLVVANIEKFETIN # NFSDSLFQPFESSESLPDTLDIGDVSEFGSSADCAPLKLKNVEGETSAASSSS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g214 ### # start gene g215 C.avellana_Jefferson_00009 AUGUSTUS gene 53507 67181 0.02 - . g215 C.avellana_Jefferson_00009 AUGUSTUS transcript 53507 67181 0.02 - . g215.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 53507 53507 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 53507 53797 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 53690 53692 . - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 53798 54232 0.85 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 54506 55093 0.99 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 55286 55413 1 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 55653 56043 1 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 56301 56629 0.99 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 56911 57048 1 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 57850 58568 0.97 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 58698 58894 0.94 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 58961 59207 0.85 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 59484 60306 1 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 60430 61899 0.84 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 62071 62967 0.96 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 63494 64441 0.67 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 64646 65027 0.26 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 65099 65556 0.76 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 65641 65742 1 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 65974 66309 0.78 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 66373 66956 0.54 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS intron 67041 67146 0.27 - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 53690 53797 0.86 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 54233 54505 0.99 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 54233 54505 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 55094 55285 0.99 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 55094 55285 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 55414 55652 1 - 2 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 55414 55652 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 56044 56300 0.99 - 1 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 56044 56300 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 56630 56910 0.99 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 56630 56910 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 57049 57849 0.97 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 57049 57849 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 58569 58697 1 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 58569 58697 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 58895 58960 0.93 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 58895 58960 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 59208 59483 0.91 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 59208 59483 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 60307 60429 0.96 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 60307 60429 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 61900 62070 0.84 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 61900 62070 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 62968 63493 1 - 1 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 62968 63493 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 64442 64645 0.37 - 1 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 64442 64645 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 65028 65098 0.43 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 65028 65098 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 65557 65640 1 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 65557 65640 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 65743 65973 0.8 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 65743 65973 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 66310 66372 0.76 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 66310 66372 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 66957 67040 0.37 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 66957 67040 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS CDS 67147 67158 0.3 - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS exon 67147 67181 . - . transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 67156 67158 . - 0 transcript_id "g215.t1"; gene_id "g215"; C.avellana_Jefferson_00009 AUGUSTUS tss 67181 67181 . - . transcript_id "g215.t1"; gene_id "g215"; # protein sequence = [MPLRNARSFEDCESGLLKMKQMMLQSLYTWRVVPCVEVNALMKTFKMKPLLFPLAGSVTAVFNCQGPLDAPIFVGSGM # VSRKISHSISDFPASCASEAMLKSKEAGAVAAFDRVPLSYLSANFTFNTDNCVADLYGIRASLVDGGEIRGAGNAWICPEGEVDDGAVDVNFSGNLSF # DKIMHRCEDDLHHALITATSKSSPLILQHHPDLAETLQAQRTLPLKKFSWCCRGNTWVISVFMIVHIVAFFATMKFDIKWIASKAEGSFSDARGHIII # SHDYITVNSSSVAFELSTKIQTSYLEEDWLNRKCGSKSVMPFVVDGVELDLRMRGFEFFNWISSYPFDSPRPMHLKATGRIKFQGKVLKPSSITNDQN # FGFEKTKQLVEMSDKGKTDSLVGEVSIAGLKLNQLMLAPQLAGQLSISRESIKLDATGRPDESLTVEVVEPLQPSSEDNLQNGKLLSFSLQKGQLRAN # VCFRPLHSANLEAEIQLNLQKRRGHGVLSVLQPKFSGVLGEALDVAARWSGDVITVEKTVLELSNSLYELQGEYVLPGTRDRSPAGKDGGGLLKRAMA # GHLGSVISSMGRWRMRLEVPRAEVAEMLPLGRLLSRITDPAIRSRSKDIFIQSLQSAGLYAENIQEMLEVIREHYTSSDEVILEESLPGLAELKGRWR # GSLDASGGGNGDTMTEFDFHGEDWEWGSYKTQRVLAVGAYSNDDGLRLDRIFIQNDNATIHADGTLLGPKTNLHFAVLNFPVSLVPTLVQVIESSASD # AVHSLRQLLAPIRGILHMEGDLRGSLARPECDVQVRLLDGAIGGIDLGRAEIVASLTSTSRFLFNAKFEPIIQNGHVHIQGSVPVTFVLSEEDAETDK # SGAAWLKERGTGSADEASEKKVSRDRNEEGWDTQLAESLKGLNWNILDVGEVRVDADIKDGGMMLLTALSPYANWLHGNAEIMLQVRGTVEQPVLNGS # ASFHKASISSPVLRKPLTNFGGTVHVKSNRLCITSLDSRVSRKGKLFVKGNLPLRTSEASLGDKIDLKCEVLEVRAKNILSGQVDTQMQITGSILQPT # ISGNIKLSHGEAYLPHDKGSGAAHFNRLASNQSQLSSSGVNHAVASRYVSRFFSSEPATSLAKFPQPSVKSSEVEKEMEQVNIKPNVDVRLSDLKLVL # GPELRIVYPLILNFAVSGELELNGLAHPKWIEPKGILTFENGDVNLVATQVRLKREHLNVAKFEPEYGLDPMLDLALVGSEWQFRIQSRASNWQDKLV # VTSTRSVEQDVLSPLEAARVVESQLAESILEGDGQLAFKKLATATLETLMPRIEGKGEFGQARWRLVYAPQIPSLLSVDPTVDPLKSLANNISFGTEV # EVQLGKRLQADERLRDGNAVDLDLPANKPPSSAPTICSIQPPSL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/20 # CDS introns: 0/19 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g215 ### # start gene g216 C.avellana_Jefferson_00009 AUGUSTUS gene 72588 74421 0.08 - . g216 C.avellana_Jefferson_00009 AUGUSTUS transcript 72588 74421 0.08 - . g216.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 72588 72588 . - . transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS exon 72588 73068 . - . transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 72946 72948 . - 0 transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS intron 73069 73169 0.88 - . transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS intron 73274 73940 0.38 - . transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS CDS 72946 73068 0.88 - 0 transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS CDS 73170 73273 0.4 - 2 transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS exon 73170 73273 . - . transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS CDS 73941 74373 0.73 - 0 transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS exon 73941 74421 . - . transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 74371 74373 . - 0 transcript_id "g216.t1"; gene_id "g216"; C.avellana_Jefferson_00009 AUGUSTUS tss 74421 74421 . - . transcript_id "g216.t1"; gene_id "g216"; # protein sequence = [MVEFFSPWHSSKRGGILLKEVHSRSRLSFSPWHARREEVPLEECMADTGSSKGSVFCVVGGLGKILTLDNLRKRNVIV # VNRCWMCKKSEETVDHLLFHCEVASALWSAFFGQFGLSWVMPGRVFELLACWWSAGRGGKCYSLEDDVLSEDGGWLSADVFVDTLEQKWHANLKVANL # FAPLFERILEIPIFWSKGRASGEVPSNSSPFHVPISNEDICQI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g216 ### # start gene g217 C.avellana_Jefferson_00009 AUGUSTUS gene 78738 80971 0.04 - . g217 C.avellana_Jefferson_00009 AUGUSTUS transcript 78738 80971 0.04 - . g217.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 78738 78738 . - . transcript_id "g217.t1"; gene_id "g217"; C.avellana_Jefferson_00009 AUGUSTUS exon 78738 80971 . - . transcript_id "g217.t1"; gene_id "g217"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 79026 79028 . - 0 transcript_id "g217.t1"; gene_id "g217"; C.avellana_Jefferson_00009 AUGUSTUS CDS 79026 80936 1 - 0 transcript_id "g217.t1"; gene_id "g217"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 80934 80936 . - 0 transcript_id "g217.t1"; gene_id "g217"; C.avellana_Jefferson_00009 AUGUSTUS tss 80971 80971 . - . transcript_id "g217.t1"; gene_id "g217"; # protein sequence = [MSVKLHCPFLGTSLGGSSNGRNRGKFVYLSSRGQPVKRVFRRCTCAKQDPWIAQVIRFSNFCGQNVELLRRALRSKNG # LKVECVKEPFSRSKALIRSLSPLWEEGLLLVRCSVLVAVISGVCLLVWYGQTKARGFIESNLLPSVCSALSEHIQRELDFGKVRRISPLSITLESCSF # GPHKEEFTCGEVPTVKLRVLPFASLRRGKIVIDAVLSHPSLFVVQKKDYSWLGIPSSEGSLQRHLSTEEGIDYRTKTRRVAREEAATRWERERDDAAS # EAAKMGYIVSEKSPIVSEVDAIKEDAIHSTALTDSKSFLCMDEKMHWRDHHCMDTGVDYDMKHADLEKSFGIKIPGLGLKFWSRVIKGPKKYKFKRKA # NGIDISASGVSAKRRILERSALAAAAYFQGLSNGKSAELSEASRDYDVMNLDSLLVKSGVDSHADTNLMGSREEILTVDTQNAKQFGDSGIKDCTVGK # NGNFVHNLSPVTVRDQKIGENLPSIEDVAGAANTDNCNVKNEGLCVHDEMFGSQRGHTFETSTLGKLEPWLSKYLPVPIWPLSLKSCLPSFPRNVGEL # LTYLLIGPLKSLKSGMGLKVEDFVAELDDGFDVVQNEGIQKMLPVTLDSVHFKGGTLMLLAYGDREPR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g217 ### # start gene g218 C.avellana_Jefferson_00009 AUGUSTUS gene 83156 89981 0.01 - . g218 C.avellana_Jefferson_00009 AUGUSTUS transcript 83156 89981 0.01 - . g218.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 83156 83156 . - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS exon 83156 83872 . - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 83487 83489 . - 0 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS intron 83873 84528 1 - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS intron 84785 84905 0.67 - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS intron 84937 85030 0.54 - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS intron 85159 87245 0.41 - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS intron 87354 87453 0.45 - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS intron 87556 87648 0.42 - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS intron 88044 88130 0.51 - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS intron 88259 89064 0.35 - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS CDS 83487 83872 1 - 2 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS CDS 84529 84784 1 - 0 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS exon 84529 84784 . - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS CDS 84906 84936 0.59 - 1 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS exon 84906 84936 . - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS CDS 85031 85158 0.24 - 0 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS exon 85031 85158 . - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS CDS 87246 87353 0.45 - 0 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS exon 87246 87353 . - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS CDS 87454 87555 0.69 - 0 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS exon 87454 87555 . - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS CDS 87649 88043 0.24 - 2 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS exon 87649 88043 . - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS CDS 88131 88258 0.41 - 1 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS exon 88131 88258 . - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS CDS 89065 89447 0.35 - 0 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS exon 89065 89981 . - . transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 89445 89447 . - 0 transcript_id "g218.t1"; gene_id "g218"; C.avellana_Jefferson_00009 AUGUSTUS tss 89981 89981 . - . transcript_id "g218.t1"; gene_id "g218"; # protein sequence = [MVGGGSRRDDGSMVINNTNVFAALETLRKKKKSDKDRKSGSKAHSSKAHSASAQADPKEPERQVFWTPAPLTVKSWAD # VDDEDDEDYYATAAPPQTSWGAAEEDQQQSKGQDSHLEVGAFYLLLLLYFGLGIRNMHQFNQALLGKWLWRYANESEALWYKIIKAKYEGQDGIRFEV # GVGSKVRFWHDIWCGENSLKHAFLSLFSIARYKEDWVKDNFTWRNXXXXXXXXXXQGWNFFAKGIRFEVGVDSKVRFWHDIWCGENSLKHAFLSLFSI # ARYKEDWVKDNFTWRNEVVKWNVIFVRPTSSKKGKFEVKSLFKSLSNFDDEVFPWKSIWRTKKTGESVDHLLLHCEIASALWHTIFSGFGLLWVMPCR # GLHPLVLKPSICPDPCRETFEGAVHGFEVYSAGVGPKGHTLLRGGSEGPYFVEETESEEDILDEGDDDVEDEHDHEPEVPVHPEPVVKKTPEVSEPPK # ETERQLSKKEKKKKELAELEALLADFGVTQNESNGQDESSGASQEKKDGEANTDGEKKENASSESKSAKKKKKKDKTSKEVKESQDQPNSEATNGPDE # AAGTEQTEEDASGVDMKERIKKMASMKKKKSSKEMDAAAKAAAQEAAARSARLAAAKKKEKNHYNQQPVR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g218 ### # start gene g219 C.avellana_Jefferson_00009 AUGUSTUS gene 107190 114291 0.11 - . g219 C.avellana_Jefferson_00009 AUGUSTUS transcript 107190 114291 0.11 - . g219.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 107190 107190 . - . transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS exon 107190 107559 . - . transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 107346 107348 . - 0 transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS intron 107560 108277 1 - . transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS intron 108454 108613 0.69 - . transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS intron 108865 110575 0.96 - . transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS CDS 107346 107559 0.8 - 1 transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS CDS 108278 108453 0.82 - 0 transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS exon 108278 108453 . - . transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS CDS 108614 108864 0.8 - 2 transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS exon 108614 108864 . - . transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS CDS 110576 110813 1 - 0 transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS exon 110576 110859 . - . transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 110811 110813 . - 0 transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS exon 114208 114291 . - . transcript_id "g219.t1"; gene_id "g219"; C.avellana_Jefferson_00009 AUGUSTUS tss 114291 114291 . - . transcript_id "g219.t1"; gene_id "g219"; # protein sequence = [MHAKSAQSSFRDRTHEFQSIAEQRKKSYSSGSVPNGPSSSSKSEEQRSAVVIQSEFNRRASKIGYGIHQTSQKLAKLA # KLAKRTSVFDDPTKEIQELTALIKQDITALNSAVVDLQLLSNSRNESGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFS # STASKDSTNPFVRQRPLAARSAASTSNAPPLPWANGSPSSSQSFSGKQMDGESQPLLQHQQHHEQQKQEMVPLQDSYMQSRAEALQNVESTIHELSSI # FNQLATLVSQQGEIAIRL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g219 ### # start gene g220 C.avellana_Jefferson_00009 AUGUSTUS gene 124186 127050 0.18 + . g220 C.avellana_Jefferson_00009 AUGUSTUS transcript 124186 127050 0.18 + . g220.t1 C.avellana_Jefferson_00009 AUGUSTUS tss 124186 124186 . + . transcript_id "g220.t1"; gene_id "g220"; C.avellana_Jefferson_00009 AUGUSTUS exon 124186 127050 . + . transcript_id "g220.t1"; gene_id "g220"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 124371 124373 . + 0 transcript_id "g220.t1"; gene_id "g220"; C.avellana_Jefferson_00009 AUGUSTUS CDS 124371 126914 0.91 + 0 transcript_id "g220.t1"; gene_id "g220"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 126912 126914 . + 0 transcript_id "g220.t1"; gene_id "g220"; C.avellana_Jefferson_00009 AUGUSTUS tts 127050 127050 . + . transcript_id "g220.t1"; gene_id "g220"; # protein sequence = [MENRVENSDDGAAIPKKSRSLDLNSLYQYRLTKEGQNKNLKRKNSSSEDGDERRNKKKKSRKEVSLSTFKDVNDRSVK # SVDDVYSSRLSSSSHDTKESKSGLSQKLNSYTASLSINDNAFRIPKRKRGFVGRKKIEGGQVLKPVGKSSSKVALVDQIAKLSPDDSGTQVESSKVRR # KQGFDESKENRNSESNLAGNLKEEGPAGHLVVNNGNSSLKRSQRNRRKRKDLASGSKSVVKEAVSLVDNSSRISDDSREDDEENLEENAARMLSSRFD # PSCTGFSSNGKASALQSANGLSFWLSSGQDFVGRGSKSLSGSESASVDAALRVLRPRIQHKEKGHSRKRRHFYEIVFRDLDPYWVLNRRIKVFWPLDQ # SWYYGVVNEYDKEGKLHHVKYDDRDEEWINLQNERFKLLLLPGEVPGKAGRKKSAMRNKSVDEGKRSLKINKKKEKRDFTAEDDSCLGSYMDSEPIIS # WLARSTRRIKSSPSCATKKQKTSGASLQSLSAGLSDEVVNLHGCLDKGLSRKSKLSSKSELPDRLTDSGRLERSATGTTCPEESKLPIVYFRRRFRKT # GPELSHISRNNPVCRSAPGSVASCRIVDEIGDFEEHDVSLGRLDSDLPLWSTDNVGSLDFSLSLIKSGQIRFELNLPVRLVLNDSFGAENFWLFRAIF # LLQHGMVMIMWPKVQLEMLFIDNVVGLRFLLFEGCFKQAVAFVFLVLRVFYRPKEQGTYVDSQLPVTSIRFKFSCVQDLRKQLVFAFYNFSELKNSKW # VYLDCKLKRHCLLTRQLPLSECTYDNIHAFQNGRNQLPITSACGRPSSVKVFLLLFPEFSLWVLLMFPTICPFPLQVVNYLYA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g220 ### # start gene g221 C.avellana_Jefferson_00009 AUGUSTUS gene 132296 136273 0.04 + . g221 C.avellana_Jefferson_00009 AUGUSTUS transcript 132296 136273 0.04 + . g221.t1 C.avellana_Jefferson_00009 AUGUSTUS tss 132296 132296 . + . transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS exon 132296 134066 . + . transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 132327 132329 . + 0 transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS intron 134067 134898 0.91 + . transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS intron 135155 135251 0.99 + . transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS CDS 132327 134066 0.63 + 0 transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS CDS 134899 135154 0.96 + 0 transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS exon 134899 135154 . + . transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS CDS 135252 135832 1 + 2 transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS exon 135252 136273 . + . transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 135830 135832 . + 0 transcript_id "g221.t1"; gene_id "g221"; C.avellana_Jefferson_00009 AUGUSTUS tts 136273 136273 . + . transcript_id "g221.t1"; gene_id "g221"; # protein sequence = [MGLARDCTYVNVSQPSSNSNEMHKKLTPFALCFAAAPTFFLSLHLKLLMEYSVAHISFRDHDSVENLGNSARFMVDDC # SSVEDCTKDVVGNNLKSLSKEIAFDGWLSCAKSEDRDLIKSSLKYKDVDLSVAGTSAVLQDSEKVGTDATVQVQKWQSHHSEAEQCALLRRPSVDRDK # ADTSSHSFLNGLSIEIPAFNKFEKPEDGGELHSAQHSEDGELHSAQHSTDVSWNMSGGIIPSPNPTAPRSTWHRNKNNLSSFGYLSHGWLDGKADIFQ # NGFGNGPKKPRTQVSYSLPLGGFDVNSKHRSHHQKALFQKRIRRANEKRSSDVSRGSQKNLELLSCDANVLITLGDKGWRECGAQVVLEIFDHNEWKL # AVKVSGITKYSYKAHQFLQPGSTNRYTHAMLWKGGKDWTLEFPDRSQWALFKEMHEECYNRNIRAASIKNIPIPGVRLIEENDDSGTEIAFVRSSKYL # RQVETDIEIALDPSRVLYDMDSDDEQWISDNPNSSEVDNCSLGKIADEMFERTMDMFEKSAYAQECDQFTSDEIEDLMDGVGPLGVIKTIYEYWRQKR # QKRGTALVRHLQPPLWETYQQEVKEWELAMTKINANLPMGCQEKAAPIEKPPMFAFCMKPRGLEVPNKGSKQRSQRKFGVSGQSNAIGGDQDGFLAFG # RRLNGFAFADDKVLYPGHSYESLDDSSPLPQASPRIFSPRDAGSRGILSMSTDGFDRNHIPKLQRNKSKKFGAFVSPNDQQMVISYNQKMMDKRNGHH # RWNLGQSEWPRRQHYHLDGSQRHVLDQLDGSDLDEFRLRDASGAAQHAINMAKLKREKAQRLLYRADLAIHKAVVALMTAEAMKASSEDLTGDG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g221 ### # start gene g222 C.avellana_Jefferson_00009 AUGUSTUS gene 138466 140135 0.72 + . g222 C.avellana_Jefferson_00009 AUGUSTUS transcript 138466 140135 0.72 + . g222.t1 C.avellana_Jefferson_00009 AUGUSTUS tss 138466 138466 . + . transcript_id "g222.t1"; gene_id "g222"; C.avellana_Jefferson_00009 AUGUSTUS exon 138466 140135 . + . transcript_id "g222.t1"; gene_id "g222"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 138585 138587 . + 0 transcript_id "g222.t1"; gene_id "g222"; C.avellana_Jefferson_00009 AUGUSTUS CDS 138585 139736 1 + 0 transcript_id "g222.t1"; gene_id "g222"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 139734 139736 . + 0 transcript_id "g222.t1"; gene_id "g222"; C.avellana_Jefferson_00009 AUGUSTUS tts 140135 140135 . + . transcript_id "g222.t1"; gene_id "g222"; # protein sequence = [MGERVKWSDLPTELLTMIGRSLDTRIDVLRFRSICSSWRSSIPPFSANPPRFPLQFPDPNTATLTEPPRWPPRLAFLF # QTTLYYIQTLNPSTSSSTLSNKGWLMKVDESNSGKLRFVNPVLDSRTRYTITRPKTLNLLNFRVVEFGKAYTLQFQLPRKRRYVPFPCVEKLVVFPNS # AWTNVDECSILMIFVDGKLGFAKRGDKKWTLVGESSSYDDIIVYKGQFYAVDRVGIVWWIECSSLKLVQFSPLCGLGSQKHLVVSCGALYVVDKYNDI # DDDRKVVGFKVYKLDEELGQWVLVKSLGDQVFVLGADCSFSVSARGCSGYTGDCILFIDHRDETLVFNLKDHSILKHHSIHDHFGLFWPPDHTGLPQA # DGWVFDCEYTW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g222 ### # start gene g223 C.avellana_Jefferson_00009 AUGUSTUS gene 142906 156031 0.01 + . g223 C.avellana_Jefferson_00009 AUGUSTUS transcript 142906 156031 0.01 + . g223.t1 C.avellana_Jefferson_00009 AUGUSTUS tss 142906 142906 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 142906 143450 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 142950 142952 . + 0 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 143451 143544 0.78 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 144088 144163 0.99 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 145265 145879 0.52 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 146249 146408 0.39 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 147832 148054 0.89 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 148379 148933 0.84 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 149255 149462 0.42 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 149908 150024 0.9 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 150767 150840 0.73 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 151222 151716 0.6 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 151775 151909 0.63 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS intron 153059 154553 0.33 + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 142950 143450 0.6 + 0 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 143545 144087 0.77 + 0 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 143545 144087 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 144164 145264 0.98 + 0 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 144164 145264 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 145880 146248 0.46 + 0 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 145880 146248 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 146409 147831 0.36 + 0 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 146409 147831 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 148055 148378 0.85 + 2 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 148055 148378 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 148934 149254 0.9 + 2 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 148934 149254 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 149463 149907 0.4 + 2 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 149463 149907 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 150025 150766 0.84 + 1 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 150025 150766 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 150841 151221 0.55 + 0 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 150841 151221 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 151717 151774 0.63 + 0 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 151717 151774 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 151910 153058 0.22 + 2 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 151910 153058 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS CDS 154554 154912 0.31 + 2 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 154554 154964 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 154910 154912 . + 0 transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS exon 155760 156031 . + . transcript_id "g223.t1"; gene_id "g223"; C.avellana_Jefferson_00009 AUGUSTUS tts 156031 156031 . + . transcript_id "g223.t1"; gene_id "g223"; # protein sequence = [MAVEDSRVFWDDSTRSFPRTLAQKCFNRHGNFLVLEELDGRERRGRVMVPEGRHRKGWDQFQSELRIAIDFAQPYVGE # IRKVVTGKQRRSFSEVLLSSSKQVEEPFGSYAEPVARVPKWMLRGNAETSKLSGPNSLAECYAGREVQVVAPAKGLAVRYVGNSGASCGGPAVRYVGN # SGASCGNSGASSSFEEKNSKEHASGTYGQGCVCAGGKEKMKISLLKLQEEIRICLEGLGVQCSCSCGSGPRGPQIFQVAHLSGLPRNQPMVRPKLLAG # QKYKASVADIGSDKVLKCYSRKVAGKAGDMGASSSNIVHRPSSIFTNSDFPAISGLLAEATTTVAPLRKGSTMEVAHLSGLPRNQPMVQPKLLAGQKD # KASVEDIGSDKVLKCYSRKVVGKAGDMGASSSNIGHLPSSIFTNSDFSAISGLPAEATTMVAPLRKGSTMEVADIAAALSPAIGPVAPALASTWDCDS # GLGIPGKELTLIPGVPAMASSGVALSVPSGSAVGVRAAREGAMGAEIVAVLSSAIGPVVPASASTWVGDFGLGILGKMPLILQAGDRKEVSSCVTLSA # PTGSVGGVRAKLKKPVLGQPEVMMKCGRDLVQPAKLSEKEWSDLQDELPPGFERWEMPDMSTKKTGEDLGEGNGVDQKLIELQGEIHPGLEKWELPGV # DNSVGWKGAMVSVCDESFCSVGEAYSGDKDSSSQGELLVPDSLALVPIEELEGRERRGRVMVPEGRHKKGWDQLQSELRIAIDFAQPHVGDARKVVTG # KQRRSFSEVLLSSSKQVEEPFGSYAEPVARVPKWMLRGNAETSKLSGPSSLAECYAGREVXXXXGCSGEGSGGKEEIRNCLEGLGVRCSCSCGSGSLG # PKILQVAQLSGLPRNQPMVQPKPSAGQKDKASVVDFGPNKVLKCYCRKVVGKAGDMGASSSNFGYQPSSIFINLDFPAISGLPAEATTTVAPLGKGLT # MKVAAGEGSMGADIATALSPVIGPVVPALASTWVCDTSLGIPGKELTLIQAGDRRVVSSSVAPSVPSGSAVGVHEAREGAMGADIVAVLSPAIGPVAP # APASTWVGDSGLGILGKMPLILQAGDRKEVLPCVTLSAPSGSVGGVRAKPKKPALGQPEVTMAGGKYGKELVQPVKLSEKEWSDFQGEYPSGFKRREL # PDLGEGKDLGEGEDLGEGNGVEQKPIDLLGEIHPGLEKWELPGVDNSLGWKGAMVSVCDESFCSMGEAYSGNKDSSSQGESLVPDSLALISIEVQEPI # SVEFVTQFSKLMGVSCEGEAGKLEEAFGLIMAGNEDSGKDAGEALKERGAVEAQTGKKGGICHKQFCEEFVGVSLCGXXXXFGLIMASSEDSGKDAGE # ALKERGXXXXTVEFVTQFSKLVGVSCDGEAEKLEEAFGLIMAGSEDSGKDAGEALKERGAAEAQTGKKVKDPGGLILGLXXXXSKVEVALGNFVAACS # FRNVDDGFAWAFAGVYGPNRDNLRRFLWEELVGLMSWWDLPWCIGGDFNATLFPSERSGGTYSRAAMREFADFISEQAGGVSTWSNNHSWSRLDRFLV # SLEWEACYPSMRQKRLLWVCSDHAPIILDCSCLLGGKRPFKFENMWLKVEGFVDKVRSWWESYHFHGIPSFILAKKMQAFKGDIKSWNDQEFGNVGGS # IKARMDDIKALDRXXXXVSWGGLYLVYHSCCLVGGKRPFKFENMWLKAEGFVDKVRSWWESYHFHGTPSFILAKKMQALKGDIKRWNAQEFGNVGGSI # KARMDDIKALDRVEEERGLSAEDIERKRLLASELETLLLQEEISWRQKSRIRWLKEGDKCTKFFHQIANANRRHNSIESLIVGGSTTSDQWVISNHVT # SFYESLFSERLNWRPRLDDLDFNMLNFGEASRLEVPFEEREVWEVVKGMDRDKAPGPDGFSMAFFQECWDVWRFLRNSMSEDFRPISLVGGTYKIVAK # VLANRMKKAMDRIISKPQNAFVKGRQILDSVLIANECLDSRIRSGEPALLCKLDMEKAYDHMNWKFLLYLLRRCGFGEKWCSWIEHCISSVRFSVLIN # GSSSGFFDSSRGSLIKLETLELYSFALKPFLEPNQVRNIGVLLVCFEAVSGLKVNLAKSVLVPVGSMNNVGILADILGCGSASMPLKYLGLPLGATFK # VKASWEAMLEKFTKRLAPWKRLYLSKGGRITLIKSTLSNLPTYFLSLFPIPASVAKRMEKIQRDFLWGGINDEFKFHLVSWNKVCSPIYEGGLGIQNM # RLMNKALLEKWLWRFAYEKEAWWRKILVAKYGAVWGGWRSRVSSGSHGVGLWKYINKGWRSFHCHIRLVPGCGSNIRFWEDIWCGDTSLKDAFPSLFN # IATNKDASIADNKECTNGSVQWNISFIRRVHDWEVEVLASFYSLLYSHLMRGVGEDRMWWTSSRKGKFEVRSYYRILASKDPSPFPWRSLWRTKVPLK # VAFFACTAVLGKTLTLDNVRKRVIHVYLADTLMQQSAAFKILRTRLKTVPSYSFNGEQLRRTSSGNPYQILHHMPSGSQINEDGDGIQDGGNSHNGIN # FASRLQQFEQMQHQHRMLAKAQAQLRNSSTTSFSKVRGRGASL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/13 # CDS introns: 0/12 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/3 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g223 ### # start gene g224 C.avellana_Jefferson_00009 AUGUSTUS gene 157261 163121 0.03 - . g224 C.avellana_Jefferson_00009 AUGUSTUS transcript 157261 163121 0.03 - . g224.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 157261 157261 . - . transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS exon 157261 158418 . - . transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 157828 157830 . - 0 transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS intron 158419 158488 0.62 - . transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS intron 158831 160672 0.72 - . transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS intron 161083 162686 0.78 - . transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS CDS 157828 158418 0.83 - 0 transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS CDS 158489 158830 0.58 - 0 transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS exon 158489 158830 . - . transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS CDS 160673 161082 0.77 - 2 transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS exon 160673 161082 . - . transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS CDS 162687 162996 1 - 0 transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS exon 162687 163121 . - . transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 162994 162996 . - 0 transcript_id "g224.t1"; gene_id "g224"; C.avellana_Jefferson_00009 AUGUSTUS tss 163121 163121 . - . transcript_id "g224.t1"; gene_id "g224"; # protein sequence = [MDSHSLRFITHHSFFSALRSGNLDSVKRLVDELTGDNPSDGSAVADLMALQNDAGETALYVAAENNLLELFRFLLKFS # DMKTLMIRSKSDMDAFHVAAKQGHLGIVKELLGIWPELCKLCDSSNTCPLYSAAVKDHLEVVNAILDADSSSIRIVRKNGKTALHTAARYGYLRIVKA # LIDHDPGIVSIKDKKGQTALHMAVKGQCPSVVEEILSADCSILNERDKKGNTALHIATRKGRSQIVGLLLSYKSVHVNTINSQQETAMDLANKLNYGE # SALEIKEFLEEAGAKLARHVGQVDAAMELKRTVSDIKHEVHSQLKENEQTRRRVSGIAKELKKLHREAVQNTTNSITVVAMWGRLXXXXNTTNSITVV # AVLFASIAFLAIFNLPGQYFTDGSNVGKAKIADNVAFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKQVVSVVNKLMWAACACTCGAFLSIAFVV # VGNRKWMAITITLMGAPLLVGTLASMCYFVFRQRFGSFRSDSQRRIKRASGSKSFSWSVYSANISDLDDHNSDFEKIYAL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g224 ### # start gene g225 C.avellana_Jefferson_00009 AUGUSTUS gene 165218 165761 0.62 - . g225 C.avellana_Jefferson_00009 AUGUSTUS transcript 165218 165761 0.62 - . g225.t1 C.avellana_Jefferson_00009 AUGUSTUS tts 165218 165218 . - . transcript_id "g225.t1"; gene_id "g225"; C.avellana_Jefferson_00009 AUGUSTUS exon 165218 165761 . - . transcript_id "g225.t1"; gene_id "g225"; C.avellana_Jefferson_00009 AUGUSTUS stop_codon 165281 165283 . - 0 transcript_id "g225.t1"; gene_id "g225"; C.avellana_Jefferson_00009 AUGUSTUS CDS 165281 165724 0.99 - 0 transcript_id "g225.t1"; gene_id "g225"; C.avellana_Jefferson_00009 AUGUSTUS start_codon 165722 165724 . - 0 transcript_id "g225.t1"; gene_id "g225"; C.avellana_Jefferson_00009 AUGUSTUS tss 165761 165761 . - . transcript_id "g225.t1"; gene_id "g225"; # protein sequence = [MAERIQKELKEIEKNPPDFCSAGMVGGDIRRWQATIIGPPGTPFVGGIFKLSLTFPPKYPMKPPEVTFKTKIYHPNID # RNGNICFNILKDDWSPAYTISAVLVSLCSLLSSPNPEDPLEPQIAAVFLKNKVQYEEEARKWTAKFAMS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g225 ### # # ----- prediction on sequence number 10 (length = 170508, name = C.avellana_Jefferson_00010) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 10 on both strands # start gene g226 C.avellana_Jefferson_00010 AUGUSTUS gene 2486 3645 0.1 + . g226 C.avellana_Jefferson_00010 AUGUSTUS transcript 2486 3645 0.1 + . g226.t1 C.avellana_Jefferson_00010 AUGUSTUS tss 2486 2486 . + . transcript_id "g226.t1"; gene_id "g226"; C.avellana_Jefferson_00010 AUGUSTUS exon 2486 3645 . + . transcript_id "g226.t1"; gene_id "g226"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 2564 2566 . + 0 transcript_id "g226.t1"; gene_id "g226"; C.avellana_Jefferson_00010 AUGUSTUS CDS 2564 3226 1 + 0 transcript_id "g226.t1"; gene_id "g226"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 3224 3226 . + 0 transcript_id "g226.t1"; gene_id "g226"; C.avellana_Jefferson_00010 AUGUSTUS tts 3645 3645 . + . transcript_id "g226.t1"; gene_id "g226"; # protein sequence = [MGACFSSVRDDSRSSQPTAKIISVNGTLREYPVPVTVSQVLEAERSSXXXXXXXXXXPSFVCNSDRLYYDDYIPVLDL # DDQLQANQIYFVLPASKLRQRLTASDMAALAVKASVALQNASSKGGHRRNKARISPVLVVNQSTSLQSNKVNYGYHGMDDGYAPKWPKKSPGVNGKPG # GVAAGGLSRAGSVRKLQRYTSKRAKMAVRSFRIRLSTIYEGDVL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g226 ### # start gene g227 C.avellana_Jefferson_00010 AUGUSTUS gene 8476 9357 0.04 + . g227 C.avellana_Jefferson_00010 AUGUSTUS transcript 8476 9357 0.04 + . g227.t1 C.avellana_Jefferson_00010 AUGUSTUS tss 8476 8476 . + . transcript_id "g227.t1"; gene_id "g227"; C.avellana_Jefferson_00010 AUGUSTUS exon 8476 9357 . + . transcript_id "g227.t1"; gene_id "g227"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 8602 8604 . + 0 transcript_id "g227.t1"; gene_id "g227"; C.avellana_Jefferson_00010 AUGUSTUS CDS 8602 9315 0.82 + 0 transcript_id "g227.t1"; gene_id "g227"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 9313 9315 . + 0 transcript_id "g227.t1"; gene_id "g227"; C.avellana_Jefferson_00010 AUGUSTUS tts 9357 9357 . + . transcript_id "g227.t1"; gene_id "g227"; # protein sequence = [MRMIDLGSQRGPLHIIDTATSVDCGREVRFRRSFRSLVECMVPCCGFQPSDSLSTDTDSTHGSYSTSTTVTGTFFGYR # KGRVSFCLQDDTRSSPLLLLEFAVPTAYLAREMQYGLLRIALECDRQKDIRSISSSTCSLFNVPVWSMYCNGRKVGFAIRRQMTVSDVAVLKQMQTVS # VGAGVLPVAPHKSEVDGDGGDLMYLRASFERVIGSPDSESFHMINPVGSSGQELSIFLLRS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g227 ### # start gene g228 C.avellana_Jefferson_00010 AUGUSTUS gene 15056 31027 0.01 + . g228 C.avellana_Jefferson_00010 AUGUSTUS transcript 15056 31027 0.01 + . g228.t1 C.avellana_Jefferson_00010 AUGUSTUS tss 15056 15056 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 15056 15266 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 15151 15153 . + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 15267 15380 0.99 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 15457 16691 0.68 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 16806 17075 0.97 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 17178 17568 0.67 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 17958 18181 0.95 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 18282 19773 0.55 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 19903 20044 1 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 20210 21980 0.95 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 22068 22158 0.99 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 22366 22452 0.94 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 22660 22753 1 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 22805 24435 0.25 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 24577 24653 0.98 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 24735 24830 0.95 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 25079 25164 1 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 25337 26363 0.98 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 26480 26618 1 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 26677 26775 0.77 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 26842 26972 0.97 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 27186 27331 0.99 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 27384 27477 0.99 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 27852 27984 1 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 28080 28972 0.79 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 29246 29674 0.23 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS intron 30313 30634 0.96 + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 15151 15266 0.27 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 15381 15456 0.96 + 1 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 15381 15456 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 16692 16805 0.71 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 16692 16805 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 17076 17177 0.69 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 17076 17177 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 17569 17957 0.92 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 17569 17957 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 18182 18281 0.99 + 1 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 18182 18281 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 19774 19902 1 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 19774 19902 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 20045 20209 0.97 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 20045 20209 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 21981 22067 1 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 21981 22067 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 22159 22365 0.99 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 22159 22365 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 22453 22659 0.94 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 22453 22659 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 22754 22804 0.99 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 22754 22804 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 24436 24576 1 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 24436 24576 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 24654 24734 0.98 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 24654 24734 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 24831 25078 0.97 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 24831 25078 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 25165 25336 1 + 1 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 25165 25336 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 26364 26479 1 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 26364 26479 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 26619 26676 0.77 + 1 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 26619 26676 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 26776 26841 0.77 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 26776 26841 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 26973 27185 0.96 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 26973 27185 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 27332 27383 0.99 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 27332 27383 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 27478 27851 0.99 + 2 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 27478 27851 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 27985 28079 1 + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 27985 28079 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 28973 29245 0.46 + 1 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 28973 29245 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 29675 30312 0.29 + 1 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 29675 30312 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS CDS 30635 30855 0.53 + 2 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS exon 30635 31027 . + . transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 30853 30855 . + 0 transcript_id "g228.t1"; gene_id "g228"; C.avellana_Jefferson_00010 AUGUSTUS tts 31027 31027 . + . transcript_id "g228.t1"; gene_id "g228"; # protein sequence = [MLTVDNDLSEVSEKERMLSVNCRSSSSSCPSPPHLNFASAPENGLLGSVLNMSPSPRISSYFNRFVQSERILSDQASL # CWDSKKAVTCSFNSIPSDGTPTLKSSAELREEIATLEGEIMHLERYLLSLYRTAFEGHDRKNVGSGHRSLADHLAASCFDNNLYTPDRLSEDIVRCIS # SIYCKLANHPHTHSGLSTSPSSSLSSSSIFSSKNPCDSWSPHYNEDASLYPQFQVLKEDSGPYSAMVEVLKICLDDDSFNFAAKMLQNFRSLVRILEK # VDPRKLKREEKLAFWINIHNALVMHWLHTLFYPGRKLKTASVRHVYALEYPEPLVHFALCSGAYSDPAVRAYTAKNVFQDLRVAKEEFIQTSVHIHKE # TKIFLPKILDYFAKDMTLSMHGLLEEEESEEAVLKRLEESVNACPDDPSLHFDLGVLLWEKGGKSEKEKAAEHFVISAKLHPQNGAAFRYLGLYYAQV # SADTQRALKCYQRAVSLNPDDSHSGEALCDLLDQQGKESLEASLCREASAKSPKAFWAFRRLGFLQLHQNKWSEAVQSLQHAIRGYPTSADLWQALGL # AYQRLGRFTAAVKGVEQFLQALDISPQSVSAQYGLASGLLGLAEECINLGAFRWGASLLEEASSVAKAGTHLAGNISCIWKLHGDIQLAYAKCFPWTE # QGQGLEFDAEAFNASILYWKQTCCIAAVSAKRSYQRALHLAPWQANIYTDIAIASDLISSLNKSYGNNLNAWQLSAKMALGALLLEGDNNEFWVALGC # LSDHNALKQHALIRGLQLDVSLAVGWAYLGKLYRKEGAKQLAKQAFDCARSIDPSLSLPWAGMSADFHARNLAPDEAFESCLRAVQILPLAEFQIGLA # KLALLSGHLSSSRVHGAILQAVQHAPHSPESHNLNGLVCESRFDYQSAAAAYRRARCAISSCSASISKSYTRDISLNLARSLSKAGNATDALLECEDL # KKEGMLDAEGLQIYAFSLWQLGKQDLALSFVRNLAASVSTMEQKFVVASVSFICRMLYCIPGLDSAINSILKMPEKLFQNSRVSFIVSAIHALDQSNR # LESVVSSSRSFVQSPVEVAGMHFLIALSKLVKQGTEFCLGVQSGIAHLRKALHMFPNSSLMRVSSDELAGNRNLLGYLLLSSKEWNDTHVATRCCNID # ASDSANKVGLKSASEILGAGAVACYAIGNKNRKFSFPTCTYQCLKEPGAIQQLQKCLRQEPWNHNFRYLLILNFIQKAREERFPHNLCVVLKRLISVA # LSSDLYTKTDMSYQKFQLLLCASEISLQSEDNIGCINHAKNASTLLLPDDYLFFSHLQLCRAYAAESDSLNLQKEYIRCLELKTDYHIGWICLKFIEL # RYNVQNDTNILELSFKESSKERNYSWNMGMAVFNLVWGLISLRNEDFLSAEEFLAQACSLAGAESCLLLCHGATCMELARKLCDSKFLLLAVKSLTKA # QETSVIPLPIVSALLAQAEGSLNSKEKWEKNIRLEWFSWPPGMIFV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/26 # CDS introns: 0/25 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g228 ### # start gene g229 C.avellana_Jefferson_00010 AUGUSTUS gene 31982 34211 0.29 - . g229 C.avellana_Jefferson_00010 AUGUSTUS transcript 31982 34211 0.29 - . g229.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 31982 31982 . - . transcript_id "g229.t1"; gene_id "g229"; C.avellana_Jefferson_00010 AUGUSTUS exon 31982 34211 . - . transcript_id "g229.t1"; gene_id "g229"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 32164 32166 . - 0 transcript_id "g229.t1"; gene_id "g229"; C.avellana_Jefferson_00010 AUGUSTUS CDS 32164 34128 0.81 - 0 transcript_id "g229.t1"; gene_id "g229"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 34126 34128 . - 0 transcript_id "g229.t1"; gene_id "g229"; C.avellana_Jefferson_00010 AUGUSTUS tss 34211 34211 . - . transcript_id "g229.t1"; gene_id "g229"; # protein sequence = [MRMKMFQFYCFFSLLLLALSVSLEAQQIYVNNKQLDCYNDLNFTDGYACNGVQTSCQAYLTFRSNPPYNSPATIGLLL # GSEPNLVAEANNMSSFDTIPADTQILIPINNCSCSGPFYQHNTSYKLSSKSETYFLVANDTYQGLTTCQALMAQNPYGDRNLTVGLNLEVPLRCACPT # RNQIAAEVKYLLTYMITWNDDISSIAQLFGVDKQSVLDANELTEQTIIFPFTPILVPLKTKPALIQKPVSPSPTPPPPPTTTINTGSRNNNKRWVFVG # VAVGASALLVLSAFLLWFFCRGRGRHSHKEAPKPIPPALSLPTNKPSPSHSQNSWTFSTQEVRYAVESLTLYKFDDLQKATGFFGEANRIKGSVYRGS # FMGDDAAVKVMKGDVSSEINLLKRINHSNIIRLSGFCVHGGNTYLVYEYTENGSLTDWLGNKYPGSSPLAWKQRVQVAYDVADALNYLHNYTNPPYIH # KNLKTSNILLDSSFRAKISNFGLARTLENQEDGFQLTRHVVGTQGYMAPEYIENGVITPKLDVFAFGVVMLELLSGREATAADKHGGDDEEDLLYPSI # RPVLEGNNVREKLRRFVDPSLRHEYPLDLAFSMAQLAKSCVAHDLNSRPAMPEVLMTLSKILSSSLDWDPSDELERSRSVGHTNGR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g229 ### # start gene g230 C.avellana_Jefferson_00010 AUGUSTUS gene 35333 37511 0.19 - . g230 C.avellana_Jefferson_00010 AUGUSTUS transcript 35333 37511 0.19 - . g230.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 35333 35333 . - . transcript_id "g230.t1"; gene_id "g230"; C.avellana_Jefferson_00010 AUGUSTUS exon 35333 37511 . - . transcript_id "g230.t1"; gene_id "g230"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 35395 35397 . - 0 transcript_id "g230.t1"; gene_id "g230"; C.avellana_Jefferson_00010 AUGUSTUS CDS 35395 37353 0.71 - 0 transcript_id "g230.t1"; gene_id "g230"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 37351 37353 . - 0 transcript_id "g230.t1"; gene_id "g230"; C.avellana_Jefferson_00010 AUGUSTUS tss 37511 37511 . - . transcript_id "g230.t1"; gene_id "g230"; # protein sequence = [MKMCEKLYCIWAVLLVVLLLEPDITNTVQGQQIYLNNKQLDCYNDRNFTDGYACNGVQTSCQAFLTFRSIPPFNSPSS # IGFLLGSKPTLIADANNMSNFDTIPADTQVIIPINNCTCSGPYYQYNASYRLSSESDTYFTVANDTYQGLTTCQALMAQNPYADVNLTVGLNLEVPLR # CACPTSKQTAAGVNFLLTYMPTEDDDTSTIADRFGVEEQSIWDANELSEESITFPFTPILVPLKTKLKPSQIHPPQPLSPPPAPSPQSTITLKPGSGK # SNKRWVFVGVAVGATALLVLSAFLLCFFCRRRHSQNKAPNPLRPLSPPPTKKENYSWSQGVRYAVESLTLYKFEDLQKATGFFSEANRIKGSVYRGSF # MGDDSAVKVLKGDVSSEINMLKMINHTNIIRLSGFCVHGGNTYLVYEHAENGSLTDWLHRHDNKSSPLAWKQRVQIAYDVADALNYLHNHTNPPYIHK # NLKTSNILLDSSFRAKISNFGLARTLENQEDGFQLTRHVVGTHGYMAPEYMEDGVITPKLDVFAFGVVILELLSGREAINDKHGGDHEEDLLSASIRR # VLEGDNVREKLRGFVDPSLRHEYPLDIAFSMAQLAKNCVAHHLNSRPAMPEVFMTLSKIHSSSLNWDPSDDLKRSGSLGHTHGR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g230 ### # start gene g231 C.avellana_Jefferson_00010 AUGUSTUS gene 38194 43051 0.05 - . g231 C.avellana_Jefferson_00010 AUGUSTUS transcript 38194 43051 0.05 - . g231.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 38194 38194 . - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS exon 38194 38580 . - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 38498 38500 . - 0 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS intron 38581 39035 1 - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS intron 39288 39405 1 - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS intron 39635 39843 0.76 - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS intron 39952 40589 0.48 - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS intron 40731 40919 0.95 - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS intron 40981 41283 0.98 - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS intron 41406 41559 1 - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS intron 41788 42552 0.93 - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS CDS 38498 38580 0.98 - 2 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS CDS 39036 39287 1 - 2 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS exon 39036 39287 . - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS CDS 39406 39634 1 - 0 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS exon 39406 39634 . - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS CDS 39844 39951 0.74 - 0 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS exon 39844 39951 . - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS CDS 40590 40730 0.67 - 0 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS exon 40590 40730 . - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS CDS 40920 40980 0.97 - 1 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS exon 40920 40980 . - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS CDS 41284 41405 1 - 0 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS exon 41284 41405 . - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS CDS 41560 41787 1 - 0 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS exon 41560 41787 . - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS CDS 42553 42693 0.94 - 0 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS exon 42553 43051 . - . transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 42691 42693 . - 0 transcript_id "g231.t1"; gene_id "g231"; C.avellana_Jefferson_00010 AUGUSTUS tss 43051 43051 . - . transcript_id "g231.t1"; gene_id "g231"; # protein sequence = [MGSGRWWGLVVIGAVVAVVASGASQKKHDPLVSRIAFGSCSDQSHPQPIWNALINFDPQVFIWLGDNIYGDIKRPFKV # FGKERTFGPWKNAPRFVPSSSQEMEFKYKKARTNPGYSRLRERTKVIGTWDDHDYGLNDAGKEFSGKINNQRLLLDFLDEPQDSPRRKQDGVYASYTF # GPVGRQVKVILLDTRYHRDPLLSDGTILGNSQWTWLEKELNGQASAITIIGSSIQVISNLSAATGPLFSFESWGRFPKERDHLFKLIADSKRDGVFFI # SGDVHFGEITRYDCATGYPLYDITSSGLTKAVEETVPPALHRIIRFVARLTPSPLRVMDQNCRYSSCTYGQPNFGAIEIDWDATPMTLKIEVRDVNGL # TVSGVKMSLLELQVGSLDPVATAKAGEHRRHCSLEVDLPWLVRYRLAILFYSAVAICLLALIGFTYAAISIVGRCLRKHKYD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g231 ### # start gene g232 C.avellana_Jefferson_00010 AUGUSTUS gene 47167 48971 0.05 - . g232 C.avellana_Jefferson_00010 AUGUSTUS transcript 47167 48971 0.05 - . g232.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 47167 47167 . - . transcript_id "g232.t1"; gene_id "g232"; C.avellana_Jefferson_00010 AUGUSTUS exon 47167 48971 . - . transcript_id "g232.t1"; gene_id "g232"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 47343 47345 . - 0 transcript_id "g232.t1"; gene_id "g232"; C.avellana_Jefferson_00010 AUGUSTUS CDS 47343 48902 1 - 0 transcript_id "g232.t1"; gene_id "g232"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 48900 48902 . - 0 transcript_id "g232.t1"; gene_id "g232"; C.avellana_Jefferson_00010 AUGUSTUS tss 48971 48971 . - . transcript_id "g232.t1"; gene_id "g232"; # protein sequence = [MSLGNLFLRCLSKHKTTYLFPPIPTSLSSHLHQHHYQYHHPHFTQCLTLSKTFSSSSSASSSTSSSTPQEPDSISLTL # SSELLKDPNSDPLPISQRLHLCFSHINPTPSLVLSTLNLSPDAGRTVLGFNHWLISNPSFTHSDETLSYFVDYFGRRKDFKATQQVLADVVGVAGPKT # LESAVDRLVRAGRPTDAVSFFERMEREYGLKRDRESLRVVVEKLCANGYASHAERMVKKLANEFFPDEGICDLLVKGWCVDGKLDDAKRLAEEMYRGG # FEIGTVAYNAILDCVCKLCREKEPFRLHSEAENVLVQMDVRGVPRNVDTFNVLITNLCKIRKTQDAMNLFYRMGEWGCYPDETTFLVLIRSLYQAARV # GEGDEMIDRMRSAGHGSKLDKKAYYGFLKILCGIERVDHALSVFKKMKEDGCEPGIKTYDLLMEKLCAHNRLDRANVLFNEGRKRGVPVELKAYVVDP # RYVKKKVKVVKSEKKRETLPEKMARKRSRLKQIRLSFVKKPKRIMRRAY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g232 ### # start gene g233 C.avellana_Jefferson_00010 AUGUSTUS gene 51836 55077 0.03 + . g233 C.avellana_Jefferson_00010 AUGUSTUS transcript 51836 55077 0.03 + . g233.t1 C.avellana_Jefferson_00010 AUGUSTUS tss 51836 51836 . + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS exon 51836 52174 . + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 51869 51871 . + 0 transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS intron 52175 53280 1 + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS intron 53342 53432 1 + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS intron 53528 53613 1 + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS intron 53648 53816 0.96 + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS intron 53872 53963 0.76 + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS intron 54007 54558 0.82 + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS CDS 51869 52174 0.9 + 0 transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS CDS 53281 53341 1 + 0 transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS exon 53281 53341 . + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS CDS 53433 53527 1 + 2 transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS exon 53433 53527 . + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS CDS 53614 53647 1 + 0 transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS exon 53614 53647 . + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS CDS 53817 53871 0.76 + 2 transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS exon 53817 53871 . + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS CDS 53964 54006 0.82 + 1 transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS exon 53964 54006 . + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS CDS 54559 54630 0.94 + 0 transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS exon 54559 55077 . + . transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 54628 54630 . + 0 transcript_id "g233.t1"; gene_id "g233"; C.avellana_Jefferson_00010 AUGUSTUS tts 55077 55077 . + . transcript_id "g233.t1"; gene_id "g233"; # protein sequence = [MCGRGGANVSLWLLISLMVAHHIWNFVGLSWNWAGLEPMQTSSVFLAAKPASAPIRVRSLYTSRTPSTANDPNSMAAA # APKWAQKTITLPPQRRGCHLITPKIVKEIGQDLSEFRCGLAHLFLQHTSASLTINENYDSDVRDDTETFLNRIVPEGRSAPWKHTIEGPDDMPAHIKS # SMFGCTLTVPITNGQLNMGTWQGIWLCEHRDDATPRKVVVTLNGI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g233 ### # start gene g234 C.avellana_Jefferson_00010 AUGUSTUS gene 55310 56131 0.26 - . g234 C.avellana_Jefferson_00010 AUGUSTUS transcript 55310 56131 0.26 - . g234.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 55310 55310 . - . transcript_id "g234.t1"; gene_id "g234"; C.avellana_Jefferson_00010 AUGUSTUS exon 55310 56131 . - . transcript_id "g234.t1"; gene_id "g234"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 55404 55406 . - 0 transcript_id "g234.t1"; gene_id "g234"; C.avellana_Jefferson_00010 AUGUSTUS CDS 55404 56009 0.98 - 0 transcript_id "g234.t1"; gene_id "g234"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 56007 56009 . - 0 transcript_id "g234.t1"; gene_id "g234"; C.avellana_Jefferson_00010 AUGUSTUS tss 56131 56131 . - . transcript_id "g234.t1"; gene_id "g234"; # protein sequence = [MPGFIMKAKHDAAXXXXXXXIVMDDQKPSSTSPKSVLGRLRRKLSPRKRENPSLSTDSEAISKHCSELQRVFDYFDED # GDGKISPAELESCVRTTGGKLSMDDAEAAVSSSDLNGDGLLDFEEFQKLMEASRDEEKNEELRLAFGMYEMEGSGCITPTSLKRMLSRLGDSKSIEDC # KAMIRKFDLNGDGVLSFEEFSCMMR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g234 ### # start gene g235 C.avellana_Jefferson_00010 AUGUSTUS gene 58746 63984 0.02 + . g235 C.avellana_Jefferson_00010 AUGUSTUS transcript 58746 63984 0.02 + . g235.t1 C.avellana_Jefferson_00010 AUGUSTUS tss 58746 58746 . + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS exon 58746 59027 . + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 58843 58845 . + 0 transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS intron 59028 59502 0.63 + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS intron 59747 60770 0.99 + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS intron 61010 62018 0.96 + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS intron 62218 62697 1 + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS intron 62746 62972 0.95 + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS intron 63081 63174 0.95 + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS intron 63364 63468 1 + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS CDS 58843 59027 0.65 + 0 transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS CDS 59503 59746 0.96 + 1 transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS exon 59503 59746 . + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS CDS 60771 61009 0.96 + 0 transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS exon 60771 61009 . + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS CDS 62019 62217 1 + 1 transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS exon 62019 62217 . + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS CDS 62698 62745 0.99 + 0 transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS exon 62698 62745 . + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS CDS 62973 63080 0.96 + 0 transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS exon 62973 63080 . + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS CDS 63175 63363 0.99 + 0 transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS exon 63175 63363 . + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS CDS 63469 63774 0.73 + 0 transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS exon 63469 63984 . + . transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 63772 63774 . + 0 transcript_id "g235.t1"; gene_id "g235"; C.avellana_Jefferson_00010 AUGUSTUS tts 63984 63984 . + . transcript_id "g235.t1"; gene_id "g235"; # protein sequence = [MAALSSVVGNSVPQIGPWWSSKQGQRRVNHSVLSLPRRSPIPTSLTRLHSSHLSIFPPTRTRYPHELGNGKSGFRSKK # NNTCKQYASMLGEPGSEAPFSGQSACFSCSLNRRITRPTLRRSIPRAFLDKSTFHISKRDIGNTSVKHDHVPRATVGPDEPHAANTAWPDVIEKQDLD # ISYPELERTELEGFLSSELLSHPKLYRGQLKNGMRYLILPNKVPPSRFEAHMEVHVGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTD # FHHTVFHIHSPISTKDSDGDLLPSVLDALNEIAFHPKFLASRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKI # RKFHERWYFPANATLYIVGDIDNISKTVHQIEAVFGQAGIENEAVSAPSPSAFGAMASFLVPKLSAGFAGSLSNEKSSNSVDQSKILKKERHAVRPPV # KHNWSLPGSSTDVKLPQIFQHELLQNFSINMFCKV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g235 ### # start gene g236 C.avellana_Jefferson_00010 AUGUSTUS gene 65366 76821 0.08 + . g236 C.avellana_Jefferson_00010 AUGUSTUS transcript 65366 76821 0.08 + . g236.t1 C.avellana_Jefferson_00010 AUGUSTUS tss 65366 65366 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 65366 65686 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 65549 65551 . + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 65687 66357 0.64 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 66460 66966 0.8 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 67102 68128 0.95 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 68354 70558 1 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 70763 70882 0.96 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 71054 71386 0.99 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 71537 72101 1 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 72240 72819 0.99 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 73048 73301 1 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 73455 73790 0.99 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 73918 74447 0.98 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 74581 74894 0.8 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 75016 75101 0.92 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 75183 75431 0.99 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 75534 75735 0.98 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS intron 75938 76521 0.81 + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 65549 65686 0.65 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 66358 66459 0.7 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 66358 66459 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 66967 67101 1 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 66967 67101 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 68129 68353 1 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 68129 68353 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 70559 70762 1 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 70559 70762 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 70883 71053 0.96 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 70883 71053 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 71387 71536 0.99 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 71387 71536 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 72102 72239 0.99 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 72102 72239 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 72820 73047 1 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 72820 73047 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 73302 73454 0.99 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 73302 73454 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 73791 73917 0.98 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 73791 73917 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 74448 74580 0.94 + 2 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 74448 74580 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 74895 75015 0.84 + 1 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 74895 75015 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 75102 75182 0.99 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 75102 75182 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 75432 75533 1 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 75432 75533 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 75736 75937 0.79 + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 75736 75937 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS CDS 76522 76604 0.86 + 2 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS exon 76522 76821 . + . transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 76602 76604 . + 0 transcript_id "g236.t1"; gene_id "g236"; C.avellana_Jefferson_00010 AUGUSTUS tts 76821 76821 . + . transcript_id "g236.t1"; gene_id "g236"; # protein sequence = [MLDVPTTSLFLMMAPISLGRVFGRVMSLESSRLYLVGRSWEDPGHGIPVNKVGTYGDLRNVLMKRIFLSALHFRINTR # YKSSNPPFTSVELDHSDSGREGCTVTTLTVTAEPKNWQSAIKVAVQEVRRLKEFGVTKGELTRYLDALLKDSEHLAAMIDNVSSVDNLDFIMESDALG # HTVMDQRQGHESLVAVAGTVTLEEVNAIGAEVLEYIADFGKATAPRPAAILACVPKKVHVDGIGETEFKIHPTEITDAIKAGLKEPIEAEPELEVPKE # LISSSQLQELWLHCRPSFIPLSSETNVTKVHDKETGITQCRLSNGIPINYKISNTEAQGGVMRLIVGGGRAAESSESKGAVVVGVRTLSEGGRVGNFS # REQVELFCVNHLINCSLESTEEFISMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYMSYYRSIPKSLERSTAHKLMLAMLDGDERFVEP # TPKSLQNLTLQSVKNAVMNQFVGRNMEVSIVGDFSEEEIESCILDYLGTVRATRNSERAHESSPIFFRPSPSDLQFQQVFLKDTDERACAYIAGPAPN # RWGLTVDGEDLLESISNISTIEGAQSTSVELHMEGKDVQKDLQRKLRGHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYV # ISVTSTPGKVHKAVEACKNVLRGLHGNKITQRELDRAKRTLLMRHEAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLTSLYEAASIDDIYLAYDQLK # VDENSLYSCIGVAGAQAGDEITGEDESDEGLPGVIPVGRGQQTGYSDLFQLPKPDNPPASCHNDIL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/17 # CDS introns: 0/16 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g236 ### # start gene g237 C.avellana_Jefferson_00010 AUGUSTUS gene 80086 85825 0.04 + . g237 C.avellana_Jefferson_00010 AUGUSTUS transcript 80086 85825 0.04 + . g237.t1 C.avellana_Jefferson_00010 AUGUSTUS tss 80086 80086 . + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS exon 80086 80160 . + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS exon 80489 81024 . + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 80497 80499 . + 0 transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS intron 81025 82471 0.74 + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS intron 82913 83586 0.93 + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS intron 83818 85103 0.99 + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS intron 85175 85265 0.92 + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS CDS 80497 81024 0.88 + 0 transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS CDS 82472 82912 0.78 + 0 transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS exon 82472 82912 . + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS CDS 83587 83817 0.96 + 0 transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS exon 83587 83817 . + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS CDS 85104 85174 0.92 + 0 transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS exon 85104 85174 . + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS CDS 85266 85332 0.92 + 1 transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS exon 85266 85825 . + . transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 85330 85332 . + 0 transcript_id "g237.t1"; gene_id "g237"; C.avellana_Jefferson_00010 AUGUSTUS tts 85825 85825 . + . transcript_id "g237.t1"; gene_id "g237"; # protein sequence = [MESGGNSLPSGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPTPARDRDLCKFHAD # DYVNFLRAITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVAGALKLNQGGSDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKVHE # RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGIDDESYQSLFKPIIGKVMEIFRPGAVILQCGADSL # SGDRLGCFNLSIKGHAECLRFMRSFNVPLLLVGGGGYTIRNVARCWCYETGVALGIELDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRA # KLLENLSKLQHAPSVQFQERPPDTELPEADEDQNDGDKRWEPDSDMESDDDRKPLPSRVKREYIEPECKDPVC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g237 ### # start gene g238 C.avellana_Jefferson_00010 AUGUSTUS gene 88231 91891 0.1 - . g238 C.avellana_Jefferson_00010 AUGUSTUS transcript 88231 91891 0.1 - . g238.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 88231 88231 . - . transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS exon 88231 89085 . - . transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 88871 88873 . - 0 transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS intron 89086 89640 0.87 - . transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS intron 90833 91645 0.86 - . transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS CDS 88871 89085 0.79 - 2 transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS CDS 89641 90832 0.9 - 0 transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS exon 89641 90832 . - . transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS CDS 91646 91684 0.99 - 0 transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS exon 91646 91891 . - . transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 91682 91684 . - 0 transcript_id "g238.t1"; gene_id "g238"; C.avellana_Jefferson_00010 AUGUSTUS tss 91891 91891 . - . transcript_id "g238.t1"; gene_id "g238"; # protein sequence = [MGSEQNRFPQQERRKRWGGCLGALSCFGTQKGGKRIVPASRIPEGNVAAAQINGPQAVGLTNQATGLAPSLLAPPSSP # ASFTNSALPSTAQSPSCFLSLSANSPGGPSSTMFATGPYANELQRFVSPPVFSTFTTEPSTAPLTPPPELAHLTTPSSPDVPFAQFLSSSVDLKSTDK # TNYIAANDLQATYSLYPGSPASSLRSPISRTSADCLSSSFPEREFTSQWDPSISHQNGKYPRSGSGRLFGLDATGASMASQDSNFFCPATFAQFYLDH # NPPFPHTGGRLSVSKDSDVYSSGGNGHQNRQNKSPKQDVEEIEAYRASFGFSADEIISTTQYVEISDVMEDSFTMTPFTSNKPPMEENIEPASLIEGL # KTHRTQTNTPSQKSLKSGSDIIDEGVCCGVPTLCNGHEDNKSRRQPGNVSGSSTPVSDILTDEEDIFSKMELSKSSRKYQLGLSTSDAEIDYRRGRSL # REGRGGFAWHH] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g238 ### # start gene g239 C.avellana_Jefferson_00010 AUGUSTUS gene 99964 105511 0.02 - . g239 C.avellana_Jefferson_00010 AUGUSTUS transcript 99964 105511 0.02 - . g239.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 99964 99964 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 99964 100727 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 100524 100526 . - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS intron 100728 100813 0.61 - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS intron 100868 101433 0.76 - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS intron 101515 101623 0.99 - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS intron 101747 101821 1 - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS intron 102244 102567 0.95 - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS intron 102700 102792 1 - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS intron 103220 103367 0.98 - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS intron 103851 104146 0.96 - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS intron 104462 104545 0.63 - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS intron 104897 104978 1 - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 100524 100727 0.32 - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 100814 100867 0.93 - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 100814 100867 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 101434 101514 0.79 - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 101434 101514 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 101624 101746 0.99 - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 101624 101746 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 101822 102243 0.99 - 2 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 101822 102243 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 102568 102699 0.96 - 2 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 102568 102699 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 102793 103219 0.99 - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 102793 103219 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 103368 103850 0.92 - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 103368 103850 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 104147 104461 0.56 - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 104147 104461 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 104546 104896 0.61 - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 104546 104896 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS CDS 104979 105257 0.97 - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS exon 104979 105511 . - . transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 105255 105257 . - 0 transcript_id "g239.t1"; gene_id "g239"; C.avellana_Jefferson_00010 AUGUSTUS tss 105511 105511 . - . transcript_id "g239.t1"; gene_id "g239"; # protein sequence = [MINAWNTGGHETVSTSVAKTNETSPSLCFISEISEGVSSQLHSGIMKAARRVVLDEIISNVMGEFVTIKKAQRRLKLD # SVNQAAQTCSLNGTMSEIAGEMKDCASSACEAAASISNAYQTRIDKTSTKCPANTKSVGSVENFWGSYTVVRGMLFDYCMQVMWNAVFYDTVAEYTSA # WRKRKVWSGYPKFKIPVGEFRARGQKPETQTDEDLLPWKESACDVDCPPGFELAAMVTDDHAQSTTIMSSSALVGGSSTTEKCSLSTDHIYSDMTCIL # KCVEDELHFSAKVSLAEYLESFVEEEVRKSFNSREDDKLNENTVDSLIQCLDTSEYGSPDICDELRTGGTETSNNYLSQAAKPINQSLSENCMSNLLE # KVFKDLCTHLDDIVDHKDIDEPPTPGFEDNPKTLVPSHICKFRPSKSDECIPKIGEYVAMAMCRQKLHDDVLREWKSSFIDTSLHQCLISWHASKNPC # EPDGNEEGAFDASKSHAGDSPTLIGKHIHGPGSSKVPQVIGKYTYFRKKKLPRKKLGSSQHPVPLDAGARGQSAEKSRKHAAGDVSETVEVQIAVVSP # KKLGPNKSRTELSVNAKSARVIIKSSLPGDRSSTKKTSGQKGMKVARTVQNNKVSKDAAKPSRDRASALFKNCNDIEKFVDRNGHDVASQEEFSATRV # SKIKRKHLMDSVPSTRPTKVSKAAEGAAKQAACREVAVQKTKSSKSRTLKPCPRSDGCARSSINGWEWHRWSLSASPAERARVRGVQSVHTKYFGPEV # NASQWSNGKGLSARTNRVKLRNLLAAVEGADLLKSTQLKARKKRLRFQRSKIHDWGLVALEAIEADDFVIEYVGELIRPRISDIRERHYEKMGIGSSY # LFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVITVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCNCGSRKYDLIFSLIVCFTVHHS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/11 # CDS introns: 0/10 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g239 ### # start gene g240 C.avellana_Jefferson_00010 AUGUSTUS gene 105643 107231 0.05 - . g240 C.avellana_Jefferson_00010 AUGUSTUS transcript 105643 107231 0.05 - . g240.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 105643 105643 . - . transcript_id "g240.t1"; gene_id "g240"; C.avellana_Jefferson_00010 AUGUSTUS exon 105643 106947 . - . transcript_id "g240.t1"; gene_id "g240"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 106371 106373 . - 0 transcript_id "g240.t1"; gene_id "g240"; C.avellana_Jefferson_00010 AUGUSTUS intron 106948 107027 0.45 - . transcript_id "g240.t1"; gene_id "g240"; C.avellana_Jefferson_00010 AUGUSTUS CDS 106371 106947 0.93 - 1 transcript_id "g240.t1"; gene_id "g240"; C.avellana_Jefferson_00010 AUGUSTUS CDS 107028 107200 0.45 - 0 transcript_id "g240.t1"; gene_id "g240"; C.avellana_Jefferson_00010 AUGUSTUS exon 107028 107231 . - . transcript_id "g240.t1"; gene_id "g240"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 107198 107200 . - 0 transcript_id "g240.t1"; gene_id "g240"; C.avellana_Jefferson_00010 AUGUSTUS tss 107231 107231 . - . transcript_id "g240.t1"; gene_id "g240"; # protein sequence = [MVSSTALLHELDSSFFSRKRLKVSNFEYQHQDSRICLGNHDDIASSMQPTAEGYSSHGCPDLGHVSPTCCNLDEKFVS # SSAMEMNCQSNGNGSEIPQPCSSGGTSYQEKSYSTFVPPAFVSGWMYLNEQGQMCGPYIQQQLYEGLSTGFLPDELPVYPVVNGSLMNPVPLKYFKEF # PDHVATGFAYLRMGTSSTTTSTNCLTSCPSVYSELQSVSQLPANSSYRSNRLMLNFDAVNFTSYQLPVFFWVL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g240 ### # start gene g241 C.avellana_Jefferson_00010 AUGUSTUS gene 113466 119437 0.2 + . g241 C.avellana_Jefferson_00010 AUGUSTUS transcript 113466 119437 0.2 + . g241.t1 C.avellana_Jefferson_00010 AUGUSTUS tss 113466 113466 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 113466 113599 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 113519 113521 . + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 113600 113783 0.99 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 113980 114062 1 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 114269 114414 0.92 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 114524 114664 0.98 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 114840 115147 1 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 115415 115505 0.84 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 115852 115934 1 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 116073 116152 1 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 116279 116380 1 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 116594 116714 0.99 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 117007 117405 0.97 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 117603 117699 1 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS intron 118051 118156 1 + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 113519 113599 0.99 + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 113784 113979 1 + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 113784 113979 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 114063 114268 1 + 2 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 114063 114268 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 114415 114523 0.9 + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 114415 114523 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 114665 114839 1 + 2 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 114665 114839 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 115148 115414 0.84 + 1 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 115148 115414 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 115506 115851 1 + 1 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 115506 115851 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 115935 116072 1 + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 115935 116072 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 116153 116278 1 + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 116153 116278 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 116381 116593 1 + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 116381 116593 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 116715 117006 0.98 + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 116715 117006 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 117406 117602 0.98 + 2 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 117406 117602 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 117700 118050 1 + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 117700 118050 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS CDS 118157 118741 1 + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS exon 118157 119437 . + . transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 118739 118741 . + 0 transcript_id "g241.t1"; gene_id "g241"; C.avellana_Jefferson_00010 AUGUSTUS tts 119437 119437 . + . transcript_id "g241.t1"; gene_id "g241"; # protein sequence = [MEASAGLVAGSHNRNELVVIRRDGESAPRPLQQLSGQICQICGDDVGLTVDGELFVACNECAFPICRTCYEYERREGN # QVCPQCKTRFKRLKGCARVQGDEEEDDIDDLENEFNFDARTKQGMHHALAADAILHYGRASDSDLPHVLHSTPQVPLLTNGQMVDDIPPEQHALVPSF # MGGAGGGKRIHPLPLSDPTLPVQPRSMDPSKDLAAYGYGSVAWKERMESWKQKQDKLQMMKKENSGKDWDYDGDGPDLPFMDEARQPLSRKLPIPSSR # INPYRMIIIIRLVVLGFFFHYRVMHPVHDAYALWLISVICEIWFAISWILDQFPKWLPIDRETYLDRLSLRYEKEGQPSQLCPVDIFVSTVDPLKEPP # LVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEFYFAQKMDYLKDKVLPSFVKERRAMKREYEEFKVRI # NALVAKAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGGHDTDGNELPRLVYVSREKRPGFNHHKKAGAMNALVRVSAVLTNAAYLLNLDCDH # YINNSKALREAMCFMMDPLLGKRVCYVQFPQRFDGIDKHDRYANRNTVFFDINMKGLDGIQGPIYVGTGCVFRRQAFYGYAAPKAKKPPTRTCNCLPK # WCYCGCCCSGKRKKKTNKPKSEIKKRNSRKGDVGASAPVCSLEGIEEGIEGFEGENYTLMSEQKLEKKFGQSSVFVASTLLEDGGTLKSASPASLLKE # AIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYCIPDRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGLKWLE # RLSYINATIYPWTSIPLLAYCTLPAVCLLTGKFITPELSNVASLWFLSLFICIFATSILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVL # AGVDTNFTVTSKAGDDAEFSELYAFKWTTLLIPPTTLLIINLIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIIIVW # SILLASIFSLLWVRIDPFLAKSNGPVLEECGLDCN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/14 # CDS introns: 0/13 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g241 ### # start gene g242 C.avellana_Jefferson_00010 AUGUSTUS gene 124486 128181 0.28 - . g242 C.avellana_Jefferson_00010 AUGUSTUS transcript 124486 128181 0.28 - . g242.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 124486 124486 . - . transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS exon 124486 125125 . - . transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 124541 124543 . - 0 transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS intron 125126 125691 1 - . transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS intron 126379 127116 1 - . transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS CDS 124541 125125 1 - 0 transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS CDS 125692 126378 1 - 0 transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS exon 125692 126378 . - . transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS CDS 127117 128148 0.97 - 0 transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS exon 127117 128181 . - . transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 128146 128148 . - 0 transcript_id "g242.t1"; gene_id "g242"; C.avellana_Jefferson_00010 AUGUSTUS tss 128181 128181 . - . transcript_id "g242.t1"; gene_id "g242"; # protein sequence = [MWRWIRCSREWYSLTLPNWLQTNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDAPSAASTSSSYSSSQPLDENL # FSDLTIVTPLETQSRSHPSPTSSSSTAIDASIPTTASTTQVIPLLSRQISRKKKRAGLRIGYARDAPPLPLYNAVDDHIHTSNGSHAHDALVAEDGKT # SKHDDHIXXXXXXXXXXXXXEQEEEEEQVVAVDDQKSSPSSELSFEHVNAQISEKLNHARELVASVSTARKDSIRRRRKAAENVNLASIKHRELEKDL # EEACEAEDFERAERVSESLAAAEREKQAFLIALRDAEADSNDIDSEMHEALQAQIAAEEQCVSLLDHFAKDAANNADLVLKTAQVSSSKGMDNWLSST # EALEVRKMELEIESYIINEARQVLNGSIEHSIEDDRRKKELLCRKKDVLTDELEKLLELVKQKEKEIAENDSNIQAVDKRISDVVSGFQEMQSNVDAK # YDNLQSCLSQMDLESEALSVKKKEIDEFSTQEEEKGARLRELARVSAEEAKAYQEAVGLRKSLMSSILRSSENKLTLVKTEEKLSEDVQMLQQEVSAA # RASLQELSSRKSNIKQDITSFKQRILFIDKRVPELEAEKKVAAAARNFKEAARIAAEAKSSSVEKEGIQIEMERAISGLEKLEEEIKDTVNRLQETES # LILSKEKEVAMSRFQRLLLIAGAATAERIAALELGDLEEANLLLAEAEAADSEAKKLQPIYNFKVEEFGNLPKHFISMELVSNLGRKQLAELAADVSP # SLP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g242 ### # start gene g243 C.avellana_Jefferson_00010 AUGUSTUS gene 129726 130432 0.13 + . g243 C.avellana_Jefferson_00010 AUGUSTUS transcript 129726 130432 0.13 + . g243.t1 C.avellana_Jefferson_00010 AUGUSTUS tss 129726 129726 . + . transcript_id "g243.t1"; gene_id "g243"; C.avellana_Jefferson_00010 AUGUSTUS exon 129726 130046 . + . transcript_id "g243.t1"; gene_id "g243"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 129770 129772 . + 0 transcript_id "g243.t1"; gene_id "g243"; C.avellana_Jefferson_00010 AUGUSTUS intron 130047 130283 0.36 + . transcript_id "g243.t1"; gene_id "g243"; C.avellana_Jefferson_00010 AUGUSTUS CDS 129770 130046 0.36 + 0 transcript_id "g243.t1"; gene_id "g243"; C.avellana_Jefferson_00010 AUGUSTUS CDS 130284 130309 0.36 + 2 transcript_id "g243.t1"; gene_id "g243"; C.avellana_Jefferson_00010 AUGUSTUS exon 130284 130432 . + . transcript_id "g243.t1"; gene_id "g243"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 130307 130309 . + 0 transcript_id "g243.t1"; gene_id "g243"; C.avellana_Jefferson_00010 AUGUSTUS tts 130432 130432 . + . transcript_id "g243.t1"; gene_id "g243"; # protein sequence = [MRSCIVKKLLCCGGKSFPSDSDAVPEGLVRVNIVGKDDIVCKFEMEANYLNHPLFENLLRLSEEEFGYSYDGALRIAC # EIDLFQYLLQLLKTSSFHGILS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g243 ### # start gene g244 C.avellana_Jefferson_00010 AUGUSTUS gene 133104 138491 0.04 - . g244 C.avellana_Jefferson_00010 AUGUSTUS transcript 133104 138491 0.04 - . g244.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 133104 133104 . - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS exon 133104 133310 . - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 133143 133145 . - 0 transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS intron 133311 134790 0.53 - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS intron 134883 135813 0.54 - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS intron 136157 136275 0.61 - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS intron 136438 137151 0.7 - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS intron 137353 137678 0.88 - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS intron 137864 138271 0.89 - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS CDS 133143 133310 0.53 - 0 transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS CDS 134791 134882 0.54 - 2 transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS exon 134791 134882 . - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS CDS 135814 136156 0.5 - 0 transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS exon 135814 136156 . - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS CDS 136276 136437 0.51 - 0 transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS exon 136276 136437 . - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS CDS 137152 137352 0.86 - 0 transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS exon 137152 137352 . - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS CDS 137679 137863 0.88 - 2 transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS exon 137679 137863 . - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS CDS 138272 138350 0.62 - 0 transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS exon 138272 138491 . - . transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 138348 138350 . - 0 transcript_id "g244.t1"; gene_id "g244"; C.avellana_Jefferson_00010 AUGUSTUS tss 138491 138491 . - . transcript_id "g244.t1"; gene_id "g244"; # protein sequence = [MNVISSVGIIMANKQLMSANGYAFSFATTLTGFHFAVTALVGLVSNATGYSASKHVPMWELFWFSIVANMSITGMNLS # LMLNSVGFYQISKLSMIPVVCVMEWILHSKQYSKEVKMSVVVVVIGVGVCTVTDVKVNAKGFICACVAVVSTSLQQITIGSLQKKYSIGSFELLSKTA # PIQALSLLLLGPFVDYYLNGKFITNYKMSSGAILFILLSCSLAVFCNVSQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSELTFKNIMGMVLAVV # GMVIYSWAVEVEKQSNTKTLHHLKNSLTEEEIRLLKDGVENIPLKDVELAQTVNCLIPTKTMKIPTQTSRPDSYSGSNPQELLRKIQELKAGQADLRQ # EMSKLKLSNDAKSEKQHAHNTRPWPPLVREEEVAPLD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g244 ### # start gene g245 C.avellana_Jefferson_00010 AUGUSTUS gene 140648 145551 0.04 - . g245 C.avellana_Jefferson_00010 AUGUSTUS transcript 140648 145551 0.04 - . g245.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 140648 140648 . - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS exon 140648 140853 . - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 140749 140751 . - 0 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS intron 140854 141767 0.94 - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS intron 141927 142019 1 - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS intron 142101 142194 0.5 - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS intron 142374 142857 0.77 - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS intron 143017 143435 0.86 - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS intron 143566 144118 0.99 - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS intron 144662 144755 0.45 - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS intron 144872 145265 0.39 - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS CDS 140749 140853 0.94 - 0 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS CDS 141768 141926 1 - 0 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS exon 141768 141926 . - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS CDS 142020 142100 1 - 0 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS exon 142020 142100 . - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS CDS 142195 142373 0.5 - 2 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS exon 142195 142373 . - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS CDS 142858 143016 0.89 - 2 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS exon 142858 143016 . - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS CDS 143436 143565 0.96 - 0 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS exon 143436 143565 . - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS CDS 144119 144661 0.89 - 0 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS exon 144119 144661 . - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS CDS 144756 144871 0.39 - 2 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS exon 144756 144871 . - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS CDS 145266 145512 0.81 - 0 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS exon 145266 145551 . - . transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 145510 145512 . - 0 transcript_id "g245.t1"; gene_id "g245"; C.avellana_Jefferson_00010 AUGUSTUS tss 145551 145551 . - . transcript_id "g245.t1"; gene_id "g245"; # protein sequence = [MPTTDGHHHSNILTIDGEQVANIEATNENQMLWTNCSASPLPTEPKWTAAPLYEANPPPCLAINTQTNRTIMLMAHNQ # HVWPXKRKPKEEGQDGDGETVVLKGPIVGTRGGMERRGVAGLMKVGNNGNEESNGNGGGDLEVINESEGWQIVRSWKRSNGQRCVFNENDNRTSLAKE # TQVVVLVANQVSAKEVQSNGDGSDSENKPTDEEPREEKKNSNEEKRADDVVIETVHTQLPIELDVREQVQPQAVLDHRRRNKGIEVLIHWQGDSPANT # TLEKLDEMQLQVPHFALEDKGQLRQGRNVVQKEREEKLAEILKGRLNQYVQGNKEEFVRHAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAI # YLGVPFIAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSAEGNYTEVELEGYLQSHKKLMVDSLWKLNVADIEATLSRVCQMVLQDNSAKKEDV # RARAKGLKTLGKIFQRVKSSNGNESEIVVDNAVHKLNGSESSYDACPPSTSPKSSNPEEPSYSTSALQSPYVEAPNFGSPHCNFPMPAPPPGAPRHPS # TGRD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g245 ### # start gene g246 C.avellana_Jefferson_00010 AUGUSTUS gene 146083 146661 0.44 - . g246 C.avellana_Jefferson_00010 AUGUSTUS transcript 146083 146661 0.44 - . g246.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 146083 146083 . - . transcript_id "g246.t1"; gene_id "g246"; C.avellana_Jefferson_00010 AUGUSTUS exon 146083 146661 . - . transcript_id "g246.t1"; gene_id "g246"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 146186 146188 . - 0 transcript_id "g246.t1"; gene_id "g246"; C.avellana_Jefferson_00010 AUGUSTUS CDS 146186 146620 0.99 - 0 transcript_id "g246.t1"; gene_id "g246"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 146618 146620 . - 0 transcript_id "g246.t1"; gene_id "g246"; C.avellana_Jefferson_00010 AUGUSTUS tss 146661 146661 . - . transcript_id "g246.t1"; gene_id "g246"; # protein sequence = [MXXXXXXXXXXXXXXXXXXXDEPWRGRGSVQIRIVLASLGLLNANDEERTTSPEELISIRVFDLKPKSTAKNFASLCL # PWGMPTKRLLENYANNGNSQGEEKKINDKVYGKDGGGDENPRDDYANNFHVHHRRHTVWPWVSDDL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g246 ### # start gene g247 C.avellana_Jefferson_00010 AUGUSTUS gene 153906 161261 0.02 + . g247 C.avellana_Jefferson_00010 AUGUSTUS transcript 153906 161261 0.02 + . g247.t1 C.avellana_Jefferson_00010 AUGUSTUS tss 153906 153906 . + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS exon 153906 154020 . + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 153940 153942 . + 0 transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS intron 154021 154107 1 + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS intron 154234 154326 1 + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS intron 154402 157086 0.2 + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS intron 157281 158545 0.38 + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS intron 158799 160873 0.32 + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS CDS 153940 154020 1 + 0 transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS CDS 154108 154233 1 + 0 transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS exon 154108 154233 . + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS CDS 154327 154401 1 + 0 transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS exon 154327 154401 . + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS CDS 157087 157280 0.39 + 0 transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS exon 157087 157280 . + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS CDS 158546 158798 0.16 + 1 transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS exon 158546 158798 . + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS CDS 160874 161008 0.57 + 0 transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS exon 160874 161261 . + . transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 161006 161008 . + 0 transcript_id "g247.t1"; gene_id "g247"; C.avellana_Jefferson_00010 AUGUSTUS tts 161261 161261 . + . transcript_id "g247.t1"; gene_id "g247"; # protein sequence = [MSNAVANGLAGAGGGIIAQIITYPLQTVNTRQQTERVSKKGSRNSDGSSLTSKSHAAAPATGTLLQILQVIRTEGWGG # LYSGLKPSLLGTAASQIVKDDLMYAFDNFHDRGLFKKSLNATFIALILEKIGQLEVRDFRSISMAGSIYKIVAKVLAIGMRSRPSRQVLIKSWQCPNL # VPVGSQPGTSSVSIGCRPSLGGVVIGSRCCPSQVSAGLGWVMLVAWLGLGKVLADRVSKVSRSGLGGGIYYYFYQVFKNRAEAFAAALRDKGRGDGTV # GMFSWLVVAAIAG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g247 ### # start gene g248 C.avellana_Jefferson_00010 AUGUSTUS gene 163769 164231 0.07 - . g248 C.avellana_Jefferson_00010 AUGUSTUS transcript 163769 164231 0.07 - . g248.t1 C.avellana_Jefferson_00010 AUGUSTUS tts 163769 163769 . - . transcript_id "g248.t1"; gene_id "g248"; C.avellana_Jefferson_00010 AUGUSTUS exon 163769 164231 . - . transcript_id "g248.t1"; gene_id "g248"; C.avellana_Jefferson_00010 AUGUSTUS stop_codon 163922 163924 . - 0 transcript_id "g248.t1"; gene_id "g248"; C.avellana_Jefferson_00010 AUGUSTUS CDS 163922 164161 0.51 - 0 transcript_id "g248.t1"; gene_id "g248"; C.avellana_Jefferson_00010 AUGUSTUS start_codon 164159 164161 . - 0 transcript_id "g248.t1"; gene_id "g248"; C.avellana_Jefferson_00010 AUGUSTUS tss 164231 164231 . - . transcript_id "g248.t1"; gene_id "g248"; # protein sequence = [MLSDCTTAEGWSTGKAQPGTIAASTANTGSKTTGEHNLGGYTATPSNIGLFPSPKPDSKQTHQENQSSPRMTTPEPPS # S] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g248 ### # # ----- prediction on sequence number 11 (length = 164036, name = C.avellana_Jefferson_00011) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 11 on both strands # start gene g249 C.avellana_Jefferson_00011 AUGUSTUS gene 2196 8340 0.09 + . g249 C.avellana_Jefferson_00011 AUGUSTUS transcript 2196 8340 0.09 + . g249.t1 C.avellana_Jefferson_00011 AUGUSTUS tss 2196 2196 . + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS exon 2196 2221 . + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS exon 5387 6308 . + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 5398 5400 . + 0 transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS intron 6309 6406 1 + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS intron 6575 6681 0.97 + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS intron 6862 7244 0.78 + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS intron 7322 7561 0.96 + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS intron 7733 7869 0.85 + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS CDS 5398 6308 0.99 + 0 transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS CDS 6407 6574 1 + 1 transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS exon 6407 6574 . + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS CDS 6682 6861 0.97 + 1 transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS exon 6682 6861 . + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS CDS 7245 7321 0.78 + 1 transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS exon 7245 7321 . + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS CDS 7562 7732 0.95 + 2 transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS exon 7562 7732 . + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS CDS 7870 8000 0.67 + 2 transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS exon 7870 8340 . + . transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 7998 8000 . + 0 transcript_id "g249.t1"; gene_id "g249"; C.avellana_Jefferson_00011 AUGUSTUS tts 8340 8340 . + . transcript_id "g249.t1"; gene_id "g249"; # protein sequence = [MMDFSEYTRIVFNKIKKLEPENATKIIGYLLLQDRGDQEIVRLALGPDQLIHEVIFKAKAELQQLATKSAPSPISPLM # NPVFNPFSNVSSRPFSSATTAFGVTPPYWDPQLASKHSSDFIPSVCSDSIAELQNQTQLLGLEDPIEAGNSGLSGFSNEYFYPDATIGNFSARASRRF # SILPELPRKTCHYFNKGFCKHGSSCRYYHGQVLPESFSQMYGDDAINEDQFFSPRSLDKLEMEIVEILKSRRGNPVSIASLPMIYYENFGKVLQAEGY # LTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHAVILAEDAAKYMDNRNEKSDPGPIVSGSRQIYLTFPAESTFTEEDVSNYFNSFGPVEDVRIPC # QQKRMFGFVTFVSADTVKVILAKGNPHFVCGARVLVKPYREKSKLNERKYPDRIEPQMYYSPHYADMDSELHAMARGCETSRLLRKQLMEEQEQALEL # ERRHLAELQLARKLPASPPYFGYSSDGFKVSHDPFEFPSAERFNYLLDVLNSGSASDDSKLRHTDASRTDPERYK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g249 ### # start gene g250 C.avellana_Jefferson_00011 AUGUSTUS gene 11446 14911 0.01 - . g250 C.avellana_Jefferson_00011 AUGUSTUS transcript 11446 14911 0.01 - . g250.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 11446 11446 . - . transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS exon 11446 12231 . - . transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 11914 11916 . - 0 transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS intron 12232 12491 0.77 - . transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS intron 13185 13279 1 - . transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS intron 13523 14460 0.28 - . transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS CDS 11914 12231 0.71 - 0 transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS CDS 12492 13184 0.78 - 0 transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS exon 12492 13184 . - . transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS CDS 13280 13522 0.69 - 0 transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS exon 13280 13522 . - . transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS CDS 14461 14760 0.28 - 0 transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS exon 14461 14911 . - . transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 14758 14760 . - 0 transcript_id "g250.t1"; gene_id "g250"; C.avellana_Jefferson_00011 AUGUSTUS tss 14911 14911 . - . transcript_id "g250.t1"; gene_id "g250"; # protein sequence = [MAVLFSLYPLNTIPHASSSSSLGVYGSHLTVQPLSNLASHSHSQRFVVLSTHSNHKILKPNRRSRYGQALSPXXXXXX # XXXXXXXXXXXXXXXXXXSSPNDDFAETSEFDVNGKRFKSQNRHKTRKGEQRQPEKGWGIRSSKFGESLKVDEDQVDVKNGKNILGTSKMEKVRSLDM # NGRGKLVTRKAMEKKYPRLFEEIDLDLKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSAQERLEYLLSVGVKETDVRRILLRQPQILEYTVEN # NLKSHVAFLMGLGIPSSRVGQIISAAPSLFSYSVENSLKPTVRYLVEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRYIFLSKELGAPRDSVVKMVR # KHPQLLHYSIDDGLLPRINFLRGIGMHNSDILKVLTSLTQVLSLSLEENLKPKYTYLINELNNEVHSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPK # GPFPLSSLVPTDECFCQQWAGTSLDKYLAFRQTLLLKEFAKKYGKKG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g250 ### # start gene g251 C.avellana_Jefferson_00011 AUGUSTUS gene 16186 22967 0.05 + . g251 C.avellana_Jefferson_00011 AUGUSTUS transcript 16186 22967 0.05 + . g251.t1 C.avellana_Jefferson_00011 AUGUSTUS tss 16186 16186 . + . transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS exon 16186 16467 . + . transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 16227 16229 . + 0 transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS intron 16468 16560 1 + . transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS intron 16611 16744 0.94 + . transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS CDS 16227 16467 1 + 0 transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS CDS 16561 16610 0.94 + 2 transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS exon 16561 16610 . + . transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS CDS 16745 16855 0.9 + 0 transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS exon 16745 16905 . + . transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 16853 16855 . + 0 transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS exon 22645 22967 . + . transcript_id "g251.t1"; gene_id "g251"; C.avellana_Jefferson_00011 AUGUSTUS tts 22967 22967 . + . transcript_id "g251.t1"; gene_id "g251"; # protein sequence = [MEALLPSLSSSLPLTLPPSKNTLFRTKSITSTVNLISHKRCTIFNANRRSVARIAAINDVSAATSPAGVEVTWQIVVS # VIAGVTPFVVAGIEFSKRIMAQKRCEVCGGSGLVLRDKYYFRCPGCGMILFLAAL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/3 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g251 ### # start gene g252 C.avellana_Jefferson_00011 AUGUSTUS gene 24186 26023 0.18 + . g252 C.avellana_Jefferson_00011 AUGUSTUS transcript 24186 26023 0.18 + . g252.t1 C.avellana_Jefferson_00011 AUGUSTUS tss 24186 24186 . + . transcript_id "g252.t1"; gene_id "g252"; C.avellana_Jefferson_00011 AUGUSTUS exon 24186 26023 . + . transcript_id "g252.t1"; gene_id "g252"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 24231 24233 . + 0 transcript_id "g252.t1"; gene_id "g252"; C.avellana_Jefferson_00011 AUGUSTUS CDS 24231 25877 0.89 + 0 transcript_id "g252.t1"; gene_id "g252"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 25875 25877 . + 0 transcript_id "g252.t1"; gene_id "g252"; C.avellana_Jefferson_00011 AUGUSTUS tts 26023 26023 . + . transcript_id "g252.t1"; gene_id "g252"; # protein sequence = [MQPSQKQRISHGMHRFSDQPVQESLSYCLPPIQNFDPNSFSDDSSHGTHPSALTFEQYCTLESSSGTSGYFVHNSPST # VSVSPNGSPVSQPDSQSFPIDPHQSPDNTCSSPVSGSCLTDDVDDLRHKIRELETAMLGTDLDILDVYSITNLVGPNKNQIPSEAEKWKQLMEMISRG # DLKDVLCACAKAIADNDMFTAEWLMSELRQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKEPASAELLSYMHLLYEVCPYFKFGYMSANG # AIAEAMKDESQVHIIDFQIAQGSQWVTLIQGLAARPGGPPRIRITGIDDSTSAYARGGGLDIVGKRLSRLAESFKVPFEFNPAEISGTDVQLEDLGVR # PGEAIAVNFAFTLHHVPDESVGSQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFFNRFLETLDYYMAIFESIDVTLPREHRERINVEQHCLARDIV # NIIACEGVERVERHELLGKWKSRFMMAGFTPYPLSSLVNATIKTLLEKYCEKYTLEERDGALYLGWLNRVLVASCAWR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g252 ### # start gene g253 C.avellana_Jefferson_00011 AUGUSTUS gene 26185 28701 0.24 - . g253 C.avellana_Jefferson_00011 AUGUSTUS transcript 26185 28701 0.24 - . g253.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 26185 26185 . - . transcript_id "g253.t1"; gene_id "g253"; C.avellana_Jefferson_00011 AUGUSTUS exon 26185 26898 . - . transcript_id "g253.t1"; gene_id "g253"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 26300 26302 . - 0 transcript_id "g253.t1"; gene_id "g253"; C.avellana_Jefferson_00011 AUGUSTUS intron 26899 28443 0.95 - . transcript_id "g253.t1"; gene_id "g253"; C.avellana_Jefferson_00011 AUGUSTUS CDS 26300 26898 0.97 - 2 transcript_id "g253.t1"; gene_id "g253"; C.avellana_Jefferson_00011 AUGUSTUS CDS 28444 28636 0.91 - 0 transcript_id "g253.t1"; gene_id "g253"; C.avellana_Jefferson_00011 AUGUSTUS exon 28444 28701 . - . transcript_id "g253.t1"; gene_id "g253"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 28634 28636 . - 0 transcript_id "g253.t1"; gene_id "g253"; C.avellana_Jefferson_00011 AUGUSTUS tss 28701 28701 . - . transcript_id "g253.t1"; gene_id "g253"; # protein sequence = [MHDMWVFLKKNVQCASKVTDVVSWPGRSYSAKKGNLDCELVVHSSATPLREMIFRQSYTRTLLCGLNTGDPSRNIVEM # IFQRASMNPSKPLRKIKTVLKVKNSAENVETFEKYREKVKKKAYEQYKRHPRSTVDGNELLRFYGTTIVCCRGKSNRVSELCKNPTCGVCRIIQSNFD # TYYTRRNGVQLSTSSEDLIENMIVTTGEEKVKRAAIVCRTIAGSTVNMVDGGYQDFDSVGSSQFSNLERLVVLSPNAVLPCFVIVFD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g253 ### # start gene g254 C.avellana_Jefferson_00011 AUGUSTUS gene 30815 31651 0.19 - . g254 C.avellana_Jefferson_00011 AUGUSTUS transcript 30815 31651 0.19 - . g254.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 30815 30815 . - . transcript_id "g254.t1"; gene_id "g254"; C.avellana_Jefferson_00011 AUGUSTUS exon 30815 31651 . - . transcript_id "g254.t1"; gene_id "g254"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 31083 31085 . - 0 transcript_id "g254.t1"; gene_id "g254"; C.avellana_Jefferson_00011 AUGUSTUS CDS 31083 31553 0.9 - 0 transcript_id "g254.t1"; gene_id "g254"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 31551 31553 . - 0 transcript_id "g254.t1"; gene_id "g254"; C.avellana_Jefferson_00011 AUGUSTUS tss 31651 31651 . - . transcript_id "g254.t1"; gene_id "g254"; # protein sequence = [MLCRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDTAGPSAGSGPSRIRSEESDTVSLDLGV # GISSAVENRSNEHRQTHHSEIMGSQTHNSSSHYKVVQANPVSTYFGVLNSGMTQYGSREHPNGSYPFPQNMGKILTGP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g254 ### # start gene g255 C.avellana_Jefferson_00011 AUGUSTUS gene 34351 38481 0.02 - . g255 C.avellana_Jefferson_00011 AUGUSTUS transcript 34351 38481 0.02 - . g255.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 34351 34351 . - . transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS exon 34351 34738 . - . transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 34519 34521 . - 0 transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS intron 34739 34824 1 - . transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS intron 34988 35072 1 - . transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS intron 35626 36288 0.76 - . transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS intron 36454 38147 0.4 - . transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS CDS 34519 34738 0.98 - 1 transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS CDS 34825 34987 1 - 2 transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS exon 34825 34987 . - . transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS CDS 35073 35625 1 - 0 transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS exon 35073 35625 . - . transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS CDS 36289 36453 0.76 - 0 transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS exon 36289 36453 . - . transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS CDS 38148 38453 0.41 - 0 transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS exon 38148 38481 . - . transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 38451 38453 . - 0 transcript_id "g255.t1"; gene_id "g255"; C.avellana_Jefferson_00011 AUGUSTUS tss 38481 38481 . - . transcript_id "g255.t1"; gene_id "g255"; # protein sequence = [MAQTQTSAALSELRLGSSGDDPGRPGTGGPSNNSAARYKLMSPAKLPISRAACITIPPGLSPSSFLESPVLLSNNMKV # RSGSMRRRFGSLARNVWLLGKGNAAEPSPTTGSFMKPQVMHGLVGSAPYPVTTVCSNSNTFSERNSNCFEFKPHATSNMVPADLNHWRSEQSMQAQGQ # RQPQAFVSSPSVKNEVAVSSNELSLSAPVNMVTSGASAPTEVDSDELNNRGTSNTGFQTSQSDNKGSGLSVVADRPSDDGYNWRKYGQKLVKGSEFPR # SYYKCTHPNCEVKKLFERSHDGQISEIIYKGSHDHPKPQPSRRYGAGTIMTVQEERSDKASSLTGRDEKSSIYGQMSHTVEQNGTPDLSPVTANDDNL # DAAGSMPNRIHDEVDDDDLFSKRRKMEIGGFDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYILQVDDQAYSYGLCPLLI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g255 ### # start gene g256 C.avellana_Jefferson_00011 AUGUSTUS gene 42596 47601 0.01 - . g256 C.avellana_Jefferson_00011 AUGUSTUS transcript 42596 47601 0.01 - . g256.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 42596 42596 . - . transcript_id "g256.t1"; gene_id "g256"; C.avellana_Jefferson_00011 AUGUSTUS exon 42596 43660 . - . transcript_id "g256.t1"; gene_id "g256"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 43293 43295 . - 0 transcript_id "g256.t1"; gene_id "g256"; C.avellana_Jefferson_00011 AUGUSTUS intron 43661 47014 0.05 - . transcript_id "g256.t1"; gene_id "g256"; C.avellana_Jefferson_00011 AUGUSTUS CDS 43293 43660 0.3 - 2 transcript_id "g256.t1"; gene_id "g256"; C.avellana_Jefferson_00011 AUGUSTUS CDS 47015 47477 0.14 - 0 transcript_id "g256.t1"; gene_id "g256"; C.avellana_Jefferson_00011 AUGUSTUS exon 47015 47601 . - . transcript_id "g256.t1"; gene_id "g256"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 47475 47477 . - 0 transcript_id "g256.t1"; gene_id "g256"; C.avellana_Jefferson_00011 AUGUSTUS tss 47601 47601 . - . transcript_id "g256.t1"; gene_id "g256"; # protein sequence = [MDGKGLRKYVLEHPNEKVAIIAELPGAVRCAPDPAAMVLDAMEGFYSVKGNKEGDVGRLRRSCVLLLEALMELKANVG # VGVRERAKELALEWKRKASSSEVQNFEVMGFLHLVAVYGLQSEFDGDELVDCFVIVAQFRQAVKLCRGFGLGDKVAAPPVGHAAVPVIVDGANSTITH # YRQSHLRSAGLLLDCPASYVSSSSVPYGTVGQTPTSVPFTGSSAGLYGFPGAPVGFGGNPSPSSSHLYSSEPYLPSDYYDRPTAYGGYGVRPEYHPSY # YP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g256 ### # start gene g257 C.avellana_Jefferson_00011 AUGUSTUS gene 47716 49029 0.02 + . g257 C.avellana_Jefferson_00011 AUGUSTUS transcript 47716 49029 0.02 + . g257.t1 C.avellana_Jefferson_00011 AUGUSTUS tss 47716 47716 . + . transcript_id "g257.t1"; gene_id "g257"; C.avellana_Jefferson_00011 AUGUSTUS exon 47716 47954 . + . transcript_id "g257.t1"; gene_id "g257"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 47811 47813 . + 0 transcript_id "g257.t1"; gene_id "g257"; C.avellana_Jefferson_00011 AUGUSTUS intron 47955 48316 0.22 + . transcript_id "g257.t1"; gene_id "g257"; C.avellana_Jefferson_00011 AUGUSTUS CDS 47811 47954 0.38 + 0 transcript_id "g257.t1"; gene_id "g257"; C.avellana_Jefferson_00011 AUGUSTUS CDS 48317 48820 0.43 + 0 transcript_id "g257.t1"; gene_id "g257"; C.avellana_Jefferson_00011 AUGUSTUS exon 48317 49029 . + . transcript_id "g257.t1"; gene_id "g257"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 48818 48820 . + 0 transcript_id "g257.t1"; gene_id "g257"; C.avellana_Jefferson_00011 AUGUSTUS tts 49029 49029 . + . transcript_id "g257.t1"; gene_id "g257"; # protein sequence = [MGLQLVEGLLEVLFLXXXXHSGQPGFWSSGSPKLMKKGLLGWFGRSDLAQPCCQTNLKAVEEQFVSSDKALASTLMKK # LSSEAFDNSRSVHEHIMEMRDMAAQLKSLEVDISESFLVHFILNSLPSEYVPFKISYNTHKDKWSVNELLTMCVQEEERLKQEKPEGIHMAIHAKGKT # RRGKYAQKFKKENKVPIKKNGKKDSCFFCKKEGHMKKDC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g257 ### # start gene g258 C.avellana_Jefferson_00011 AUGUSTUS gene 51957 52361 0.04 - . g258 C.avellana_Jefferson_00011 AUGUSTUS transcript 51957 52361 0.04 - . g258.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 51957 51957 . - . transcript_id "g258.t1"; gene_id "g258"; C.avellana_Jefferson_00011 AUGUSTUS exon 51957 52361 . - . transcript_id "g258.t1"; gene_id "g258"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 52100 52102 . - 0 transcript_id "g258.t1"; gene_id "g258"; C.avellana_Jefferson_00011 AUGUSTUS CDS 52100 52309 0.6 - 0 transcript_id "g258.t1"; gene_id "g258"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 52307 52309 . - 0 transcript_id "g258.t1"; gene_id "g258"; C.avellana_Jefferson_00011 AUGUSTUS tss 52361 52361 . - . transcript_id "g258.t1"; gene_id "g258"; # protein sequence = [MAESQRLEVAGRLSERQQQEEMMPETKVEKRRCRRMTNRASKKPDRRPMTNPNEKTIVLARRGRRSVGS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g258 ### # start gene g259 C.avellana_Jefferson_00011 AUGUSTUS gene 59444 63171 0.14 - . g259 C.avellana_Jefferson_00011 AUGUSTUS transcript 59444 63171 0.14 - . g259.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 59444 59444 . - . transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS exon 59444 59998 . - . transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 59598 59600 . - 0 transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS intron 59999 60090 1 - . transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS intron 61330 61420 0.83 - . transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS intron 62555 62631 0.74 - . transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS CDS 59598 59998 1 - 2 transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS CDS 60091 61329 0.83 - 2 transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS exon 60091 61329 . - . transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS CDS 61421 62554 0.62 - 2 transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS exon 61421 62554 . - . transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS CDS 62632 63139 0.74 - 0 transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS exon 62632 63171 . - . transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 63137 63139 . - 0 transcript_id "g259.t1"; gene_id "g259"; C.avellana_Jefferson_00011 AUGUSTUS tss 63171 63171 . - . transcript_id "g259.t1"; gene_id "g259"; # protein sequence = [MSPPHTSRPHLYHSFYILCFFLSLLSGVKSDELQILTRLKSSLQGSTTDVFSSWESSSSPCNFAGITCDSNNLVTEIE # LSNKNLTGTVPLDSICQLQSLERLSLGSNHLHGPITEDLKNCVKLQYLDLANNFFNGSVPDISTLTGLQYLHLNNSGFSGNFPWDSLRNMTAGLALPL # ELQHPRTNPSWDWKTHEANQLGIFRQXXXXFNLLNGPITQDLNKCVNLHYLDLANNFFTGPVPDISSLTKLQYLHLNNSGFSGIFPWDSLRNMKGLVR # LSLGDNPFNPSPIPSDVVHLTKLDWLYLSNCNIQGPIPAGIGTLTKLINLEFSDNNMTGEIPEEIGNLVNLWQLELYNNSFTGKLPASFRNLTKLEMF # DASTNYLEGDMSELRYLTNLVDLQLYVNNLSGQVPAELGEFKKLVNLSLYSNRLTGPLPQKLGSWAEFNFIDVSDNLLTGSIPPDMCKQGTMKKLLLL # NNRFTGEIPANYANCSTLLRFRVPNNLLSGTVPTGIWGLPNVNIFDISSNNIQGPITSDIKNAKSLGQLLVGGNRLSDNRLSGELPVEISGATSLVSI # QLNDNQFSGNIPSGVGELKQLNSLHLQNNKFSGSIPDTLSTGVSLTDINMANNSLSGQIPSSLGSLPTLNALNLSNNQLSGEIPGTFSSLRLSLLDLS # HNRLTGPVPQSLSLAAYNGSFAANPGLCSSIIGSVFPRCPSASGMSREVRTLIICFAVGTALLIASLVYSFYLKKREKNHSRSLKDESWDVKSYHVLS # FTEDEILDAVKQENLIGKGGSGNVYKVVLANGKELAVKHIWNADSRGTGRSTTVPMLGKRGGKSKEFDSEVQTLSSIRHVNVVKLYCSITSEDSSLLV # YEFLPNGSLWDQLHSCRKTELDWETRHEIAVGGAKGLEYLHHGYERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANGGRDSTHVIAGTHGYIAP # EYGYTYKVNEKSDVYSFGVVLMELVTGKKPIEPEYGENKDIVSWICSKLKDRESILSVVDSRIPEAFKEDAIKVLKIAILCTAALPALRPTMRTVVQM # LEEAAPYKLVGIAIGKDGASKRNEVKGTEKTSPDL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g259 ### # start gene g260 C.avellana_Jefferson_00011 AUGUSTUS gene 72436 74501 0.12 - . g260 C.avellana_Jefferson_00011 AUGUSTUS transcript 72436 74501 0.12 - . g260.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 72436 72436 . - . transcript_id "g260.t1"; gene_id "g260"; C.avellana_Jefferson_00011 AUGUSTUS exon 72436 72899 . - . transcript_id "g260.t1"; gene_id "g260"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 72611 72613 . - 0 transcript_id "g260.t1"; gene_id "g260"; C.avellana_Jefferson_00011 AUGUSTUS intron 72900 72976 0.67 - . transcript_id "g260.t1"; gene_id "g260"; C.avellana_Jefferson_00011 AUGUSTUS CDS 72611 72899 0.7 - 1 transcript_id "g260.t1"; gene_id "g260"; C.avellana_Jefferson_00011 AUGUSTUS CDS 72977 74451 0.67 - 0 transcript_id "g260.t1"; gene_id "g260"; C.avellana_Jefferson_00011 AUGUSTUS exon 72977 74501 . - . transcript_id "g260.t1"; gene_id "g260"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 74449 74451 . - 0 transcript_id "g260.t1"; gene_id "g260"; C.avellana_Jefferson_00011 AUGUSTUS tss 74501 74501 . - . transcript_id "g260.t1"; gene_id "g260"; # protein sequence = [MSSARASRQHLYSSLCLLSFLSLLSSVRSDELQILLKLKSALQQSNTGVFSTWVPTNSSVCHFAGITCNADGSVREIE # LSNQNLTGTLPLDSICQLQSLEKLSFGFNLLNGPITQDLNKCVKLHYLDLANNFFTGPVPDISSLSELQYLHLNNSGFSGSFPWKSLQNMKGLIRLSL # GDNPLSPSPIPNDVVQLTKLDWLYLSNCNIQGTIPAGIGTLIGLINLEFADNNMTGEIPTEIGNLVNLWQLELYNNSFTGKLPASFRNLKKLENFDAS # KNHLEGDLSNLRFSTNLVSLQLYKNNLTGQLPAELGEFKKLVNLSLYENKLTGPLPQKIGSWAKFDFIDVSDNFLTGPIPPDMCKQGTMKKLLVLNNR # FTGEIPANYATCSTLIRFRVPNNLLSGTVPAGIWGLPNANIIDITSNNIQGPITPDIKNAKSLGQLFVGNNRLSGQLPAEISGATSLVAIELNDNQFS # GNITSSIGDLKQLGNLHLQNNNIGDLKQLGNLHLQNNKLSDSIPEALGSCDSLTDINMANNSLSGELPSSLGSLPTLKYLNLSYNQLSGEVPKIFSSL # RLNLLDLSHNNFTGPVPHS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g260 ### # start gene g261 C.avellana_Jefferson_00011 AUGUSTUS gene 88086 91669 0.05 + . g261 C.avellana_Jefferson_00011 AUGUSTUS transcript 88086 91669 0.05 + . g261.t1 C.avellana_Jefferson_00011 AUGUSTUS tss 88086 88086 . + . transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS exon 88086 88675 . + . transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 88192 88194 . + 0 transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS intron 88676 89606 1 + . transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS intron 90353 90780 1 + . transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS intron 90845 90924 0.95 + . transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS CDS 88192 88675 1 + 0 transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS CDS 89607 90352 0.94 + 2 transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS exon 89607 90352 . + . transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS CDS 90781 90844 0.95 + 0 transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS exon 90781 90844 . + . transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS CDS 90925 91091 0.38 + 2 transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS exon 90925 91669 . + . transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 91089 91091 . + 0 transcript_id "g261.t1"; gene_id "g261"; C.avellana_Jefferson_00011 AUGUSTUS tts 91669 91669 . + . transcript_id "g261.t1"; gene_id "g261"; # protein sequence = [MAIPEAERRRVRFRTTIEPKVPLRRLLRVASVACGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLLVQPL # VGHMSDRSTSRFGRRRPFILAGAVLIAVSVLIIGHSADIGWLLGDRGSFRPRAVAAFVFGFWILDVANNMTQGPCRALLADLTGKDHRRNRVANAYFS # LFMAVGNVLGFATGSYSGWFKIFPFTHTTACNANCANLKSAFLIDIVFIAITTYVSISAAQEVPLGSSVRSTPSAEDGPGTSGHAQEAFLWELFGTFS # YFSGSIWVILFVTALTWIGWFPFLLFDTDWMGREIYGGKPNEGQNYSTGVRMGAFGLMLNSVVLGITSVLMEKLCSKLGAGFVWGVSNILMALCFLGM # LVITFVAKSLGYAGLELPPDGIVIAALLIFAILGVPLAITYSVPYALISSRIESLGLGQGLSMGVLNLAIVIPQVWLPFHSFILCAYLALILNGNQFI # FMIDVVLYQVFGMTDN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g261 ### # start gene g262 C.avellana_Jefferson_00011 AUGUSTUS gene 93726 98154 0.16 + . g262 C.avellana_Jefferson_00011 AUGUSTUS transcript 93726 98154 0.16 + . g262.t1 C.avellana_Jefferson_00011 AUGUSTUS tss 93726 93726 . + . transcript_id "g262.t1"; gene_id "g262"; C.avellana_Jefferson_00011 AUGUSTUS exon 93726 93933 . + . transcript_id "g262.t1"; gene_id "g262"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 93811 93813 . + 0 transcript_id "g262.t1"; gene_id "g262"; C.avellana_Jefferson_00011 AUGUSTUS intron 93934 96816 0.71 + . transcript_id "g262.t1"; gene_id "g262"; C.avellana_Jefferson_00011 AUGUSTUS CDS 93811 93933 0.94 + 0 transcript_id "g262.t1"; gene_id "g262"; C.avellana_Jefferson_00011 AUGUSTUS CDS 96817 96975 0.95 + 0 transcript_id "g262.t1"; gene_id "g262"; C.avellana_Jefferson_00011 AUGUSTUS exon 96817 96976 . + . transcript_id "g262.t1"; gene_id "g262"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 96973 96975 . + 0 transcript_id "g262.t1"; gene_id "g262"; C.avellana_Jefferson_00011 AUGUSTUS exon 97913 98154 . + . transcript_id "g262.t1"; gene_id "g262"; C.avellana_Jefferson_00011 AUGUSTUS tts 98154 98154 . + . transcript_id "g262.t1"; gene_id "g262"; # protein sequence = [MWLPEQNKGGYMTTIAGVGHVATLTRWGLAAQPPSQSHRSEVVVSLGSGPWDQLFGGGNAPAFAVAAVAAFASGLVAI # LAIPRSGPQKPRGLT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/3 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g262 ### # start gene g263 C.avellana_Jefferson_00011 AUGUSTUS gene 101376 103092 0.1 + . g263 C.avellana_Jefferson_00011 AUGUSTUS transcript 101376 103092 0.1 + . g263.t1 C.avellana_Jefferson_00011 AUGUSTUS tss 101376 101376 . + . transcript_id "g263.t1"; gene_id "g263"; C.avellana_Jefferson_00011 AUGUSTUS exon 101376 103092 . + . transcript_id "g263.t1"; gene_id "g263"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 101464 101466 . + 0 transcript_id "g263.t1"; gene_id "g263"; C.avellana_Jefferson_00011 AUGUSTUS CDS 101464 102924 0.84 + 0 transcript_id "g263.t1"; gene_id "g263"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 102922 102924 . + 0 transcript_id "g263.t1"; gene_id "g263"; C.avellana_Jefferson_00011 AUGUSTUS tts 103092 103092 . + . transcript_id "g263.t1"; gene_id "g263"; # protein sequence = [MISMLFLGYLGELELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKLLGLTLQRTVLLLLSTSIPISFMW # LNMKRILLWCGQDKEISSVAHTFIVFSIPDLFFLSLLHPLRIYLRTQSVTLPLTYCSAISVLLHIPINFLLVVHFKMGISGVAIAMVWTNLNLFLLLS # SFIYFSGVYKNSWVSPSTDCVRGWSSLLAMAIPTCISVCLEWWWYEFMILLCGLLVNPKATIASMGILIQTTSLVYVFPSALSLGVSTRVGNELGANR # PEKARISTIVSLVCAVGLGLAAMLFTTLMRHQWGKFFTTDAEILELTAIALPVAGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAIF # LGFVAKIGFAGLWLGLLAAQASCALLMLYVLCNTDWMIQVERARQLTQTYTTSPPLPVSSSSSPPEISNTEESGKKANLEEILCINNGDELLMKSPSP # TSLETEPLISTRHDHI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g263 ### # start gene g264 C.avellana_Jefferson_00011 AUGUSTUS gene 119626 122071 0.09 + . g264 C.avellana_Jefferson_00011 AUGUSTUS transcript 119626 122071 0.09 + . g264.t1 C.avellana_Jefferson_00011 AUGUSTUS tss 119626 119626 . + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS exon 119626 120004 . + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 119732 119734 . + 0 transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS intron 120005 120260 1 + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS intron 120422 120560 1 + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS intron 120662 120742 1 + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS intron 120925 121403 0.9 + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS intron 121503 121734 0.77 + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS CDS 119732 120004 0.94 + 0 transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS CDS 120261 120421 1 + 0 transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS exon 120261 120421 . + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS CDS 120561 120661 1 + 1 transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS exon 120561 120661 . + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS CDS 120743 120924 1 + 2 transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS exon 120743 120924 . + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS CDS 121404 121502 0.86 + 0 transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS exon 121404 121502 . + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS CDS 121735 121827 0.89 + 0 transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS exon 121735 122071 . + . transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 121825 121827 . + 0 transcript_id "g264.t1"; gene_id "g264"; C.avellana_Jefferson_00011 AUGUSTUS tts 122071 122071 . + . transcript_id "g264.t1"; gene_id "g264"; # protein sequence = [MAAAAAAARAVVAAGNHGCLTTSYLFLHRPFSATRTNISRALRLNPNLNGWPRRRFTCRAVYNPEDVLIKEEGQLKTL # DYRVFLVNHSGKKVSPWHDIPLRLGNGIYNFIVEIPKDTSAKMEVATDEPYTPIKQDTKKGKLRYHPYNINWNYGLLPQTWEDPSFANSDVDGALGDN # DPVDVVEIGERQAKIGQILKVKPLAALAMIDEGELDWKIIAISLDDPRASIVNDIDDVKKHFPGTLTAIRDWFRDYKIPDGKPASRFGLGNKAANKDY # ALKVINETNESWAKLIKRSTPADNLSLV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g264 ### # start gene g265 C.avellana_Jefferson_00011 AUGUSTUS gene 125736 128835 0.06 + . g265 C.avellana_Jefferson_00011 AUGUSTUS transcript 125736 128835 0.06 + . g265.t1 C.avellana_Jefferson_00011 AUGUSTUS tss 125736 125736 . + . transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS exon 125736 126908 . + . transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 126127 126129 . + 0 transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS intron 126909 128144 1 + . transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS intron 128395 128513 1 + . transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS CDS 126127 126908 1 + 0 transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS CDS 128145 128394 1 + 1 transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS exon 128145 128394 . + . transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS CDS 128514 128684 1 + 0 transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS exon 128514 128835 . + . transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 128682 128684 . + 0 transcript_id "g265.t1"; gene_id "g265"; C.avellana_Jefferson_00011 AUGUSTUS tts 128835 128835 . + . transcript_id "g265.t1"; gene_id "g265"; # protein sequence = [MASIRRTLSPYHDRQYQNGGGPYSPKLFSSPRHPSQLPEIAARVRGFLGYPPRKGQLGRRRAFICRCLLFFFLGFLLG # LAPFDHHVNDGDDEDIRGRRDNFSFEIKPPLVNAHQKTRLNDVVSADEKSEALVDAVSLGLRFDLVPRKQLIVVTPTYGRPLQAYFLNRLGHVLRLVP # PPLLWIVVETNPASMETAEILRKTGVMYRHLVCARNSTNVKDRGVHQRNTALEHIERHRLDGVVYFADDDNIYSLELFQSLREISRFGTWPIAMLAQS # KNKAILEGPVCNGSRVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTSVPIRQLDIVKEGFQETTFIEQVVEDESQMEGIPPGCSRIMNW # HLHLEAHHFVYPRGWLLQKNLDVVLPIK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g265 ### # start gene g266 C.avellana_Jefferson_00011 AUGUSTUS gene 130657 133831 0.04 - . g266 C.avellana_Jefferson_00011 AUGUSTUS transcript 130657 133831 0.04 - . g266.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 130657 130657 . - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS exon 130657 131318 . - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 131198 131200 . - 0 transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS intron 131319 132452 1 - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS intron 132557 132660 1 - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS intron 132745 132890 0.83 - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS intron 132936 133373 0.83 - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS intron 133446 133520 1 - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS intron 133602 133681 0.77 - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS CDS 131198 131318 0.99 - 1 transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS CDS 132453 132556 1 - 0 transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS exon 132453 132556 . - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS CDS 132661 132744 1 - 0 transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS exon 132661 132744 . - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS CDS 132891 132935 0.83 - 0 transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS exon 132891 132935 . - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS CDS 133374 133445 1 - 0 transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS exon 133374 133445 . - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS CDS 133521 133601 0.98 - 0 transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS exon 133521 133601 . - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS CDS 133682 133741 0.45 - 0 transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS exon 133682 133831 . - . transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 133739 133741 . - 0 transcript_id "g266.t1"; gene_id "g266"; C.avellana_Jefferson_00011 AUGUSTUS tss 133831 133831 . - . transcript_id "g266.t1"; gene_id "g266"; # protein sequence = [MMHYVSHMLVIMPHVDCFLQITDACSACFEQRTVFTQQVLAKALNQMVDETPLPLLFMRTVIQAIDAFPTLVDFVMEI # LSKLVNRQVWRMPKLWVGFLKCVSQTQPHSFDVLLQLPAPQLESSLNKHSKLRGPLASYARQPSVRTSVPRSTLAVLGLANETNLQLPHVSSSLHSAD # STSSSVQGATPT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g266 ### # start gene g267 C.avellana_Jefferson_00011 AUGUSTUS gene 142434 148741 0.01 - . g267 C.avellana_Jefferson_00011 AUGUSTUS transcript 142434 148741 0.01 - . g267.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 142434 142434 . - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS exon 142434 143121 . - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 143044 143046 . - 0 transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS intron 143122 143658 0.54 - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS intron 143905 144017 0.99 - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS intron 144147 145297 0.26 - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS intron 145429 146340 0.46 - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS intron 146969 147094 1 - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS intron 147686 147770 1 - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS intron 147900 148592 0.33 - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS CDS 143044 143121 0.54 - 0 transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS CDS 143659 143904 0.93 - 0 transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS exon 143659 143904 . - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS CDS 144018 144146 0.61 - 0 transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS exon 144018 144146 . - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS CDS 145298 145428 0.21 - 2 transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS exon 145298 145428 . - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS CDS 146341 146968 0.48 - 0 transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS exon 146341 146968 . - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS CDS 147095 147685 1 - 0 transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS exon 147095 147685 . - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS CDS 147771 147899 0.64 - 0 transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS exon 147771 147899 . - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS CDS 148593 148649 0.33 - 0 transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS exon 148593 148741 . - . transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 148647 148649 . - 0 transcript_id "g267.t1"; gene_id "g267"; C.avellana_Jefferson_00011 AUGUSTUS tss 148741 148741 . - . transcript_id "g267.t1"; gene_id "g267"; # protein sequence = [MSCCQYPVFLKNCIFGIPESRDRLLRALRAMNAGDAADQVIRQVDKIIKNSERASRDARLGKDDQLSSQLPVSSDLLK # KRSLPFDNEELANGHEVGSKRIRYGSDQLALPVQVNDAGQDSSLLNGVSPVLHGQLTPVEQMIAMIGALLAEGERGAESLEILISKIHPDLLADIVIT # NMKHLPKTLPPLTRLGNSPVTRQIGSVTSPAQVVSISAPTNFEESPDVSAQAPLSSTNATSSSLSDTPPINNLPADSKRDLRRDPRRLDPRRVVAPVG # APSIPVVEDIGAVQSELDPSISMSKPISLPVTTSLENPSTSLMPKIKSEDKILGSPLVSGTDQLTPNKEVLDKTEEIDPITEDTPSDPAPSPVNKVDE # DSVALKLSDVVVANGADKLSFLESDQNSPTVSNASASEDTCQDLPLLPSYVELTQEQERSVRNLAIEQIIESYKHSCGTECSHMCMALLARLVAQVGT # DDDVVTMLKNHVVMQYQWQKVSPFLSLQVLFLFCLDDCSDSERTGFQGHELVLHVLYHLHTLIILDSAENSSVAAVVYEKLLLAVAKSLLDSFPASDK # SFSRLFGEVPLLPDSALKLLYELCYADITDHLGKDVRDVERVTQGLGAVWILILGRPLNRRACLDIALKKMQQYLNVPPSLLVRSGEDSTKGMD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g267 ### # start gene g268 C.avellana_Jefferson_00011 AUGUSTUS gene 160031 163121 0.5 - . g268 C.avellana_Jefferson_00011 AUGUSTUS transcript 160031 163121 0.5 - . g268.t1 C.avellana_Jefferson_00011 AUGUSTUS tts 160031 160031 . - . transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS exon 160031 161027 . - . transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS stop_codon 160861 160863 . - 0 transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS intron 161028 161206 0.95 - . transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS intron 161310 162387 0.97 - . transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS intron 162481 162570 1 - . transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS intron 162731 162809 1 - . transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS CDS 160861 161027 0.85 - 2 transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS CDS 161207 161309 0.97 - 0 transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS exon 161207 161309 . - . transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS CDS 162388 162480 0.98 - 0 transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS exon 162388 162480 . - . transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS CDS 162571 162730 1 - 1 transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS exon 162571 162730 . - . transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS CDS 162810 163012 1 - 0 transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS exon 162810 163121 . - . transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS start_codon 163010 163012 . - 0 transcript_id "g268.t1"; gene_id "g268"; C.avellana_Jefferson_00011 AUGUSTUS tss 163121 163121 . - . transcript_id "g268.t1"; gene_id "g268"; # protein sequence = [MAGAPRDQALALLAAANNHGDLAVKMSSLKQARDILLSVEPSLAAELFPYLVELQSSPESLVRKLLVEVVEEVGLKAM # ELSSVLLSVLVALVRDGDSIVAKQCIVSGTNFFCRVMEELALQFLRRGKVERWLEELWTWMVKFKDAVFAIALEPGSVGTKLLALKFLETYVLLFTSD # TDELEKPVTEANRRAFNMSWLVGGHPVLDPVMLMSEANRTLANLLNLLPLTNGLPGSLTITVINW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g268 ### # # ----- prediction on sequence number 12 (length = 163908, name = C.avellana_Jefferson_00012) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 12 on both strands # start gene g269 C.avellana_Jefferson_00012 AUGUSTUS gene 2335 3771 0.37 - . g269 C.avellana_Jefferson_00012 AUGUSTUS transcript 2335 3771 0.37 - . g269.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 2335 2335 . - . transcript_id "g269.t1"; gene_id "g269"; C.avellana_Jefferson_00012 AUGUSTUS exon 2335 3771 . - . transcript_id "g269.t1"; gene_id "g269"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 2469 2471 . - 0 transcript_id "g269.t1"; gene_id "g269"; C.avellana_Jefferson_00012 AUGUSTUS CDS 2469 3419 0.99 - 0 transcript_id "g269.t1"; gene_id "g269"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 3417 3419 . - 0 transcript_id "g269.t1"; gene_id "g269"; C.avellana_Jefferson_00012 AUGUSTUS tss 3771 3771 . - . transcript_id "g269.t1"; gene_id "g269"; # protein sequence = [MRIEQSSVWILIVSLLCILSWLPLFNAQPRGISARSLDALLQDYAFRAFAEHPRTGIPYDARIPSNLSGVEGAAMRLR # SGSLRNRGVKRYKEFQIPPGVAVQPYVERLGLVYHNLGNWSSILYPLPGFTYLAPVLGLLAYDASDLSASSLPELYIRASLKPILIKFPNLTSAPPAD # GLSPKCVYFDLQGSVQFDNVVSGNACSATQQGHFSIAVESTAPSPAPNTAAVLPPNAGGRGGKGNYSKVWTVVGSLVGVFALLGLLVVLLIRCKDGKK # VQQMEWAVDGGETLQRTSVGNTKAPLAMGTRTRPVLETEYVP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g269 ### # start gene g270 C.avellana_Jefferson_00012 AUGUSTUS gene 5726 8584 0.04 + . g270 C.avellana_Jefferson_00012 AUGUSTUS transcript 5726 8584 0.04 + . g270.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 5726 5726 . + . transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS exon 5726 6202 . + . transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 5787 5789 . + 0 transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS intron 6203 7185 0.23 + . transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS intron 7367 7455 0.69 + . transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS intron 7534 8261 0.4 + . transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS CDS 5787 6202 0.4 + 0 transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS CDS 7186 7366 0.26 + 1 transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS exon 7186 7366 . + . transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS CDS 7456 7533 0.4 + 0 transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS exon 7456 7533 . + . transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS CDS 8262 8402 0.5 + 0 transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS exon 8262 8584 . + . transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 8400 8402 . + 0 transcript_id "g270.t1"; gene_id "g270"; C.avellana_Jefferson_00012 AUGUSTUS tts 8584 8584 . + . transcript_id "g270.t1"; gene_id "g270"; # protein sequence = [MEAPATPGNASSSSSSSDNICNSASYGIQAAASNIIRGPLTGLLEYSGILGGRAGSSNSPETEYLQVDSNESFPVEGG # EEEXXXXXXXXXEVSIRIIGAEHEHFSAHQHIPANPAHVSLSDLTNSASTRSYDVQRFVRWPLFIQGQMLTLAEYILLLYRALLPIPVWYKFFLNKEY # GSLFSSLTTGLYLTFKLTSLVEKVQSLFAALRALSHKEVHCGSHATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWSYLSPPLSLFR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g270 ### # start gene g271 C.avellana_Jefferson_00012 AUGUSTUS gene 9880 14061 0.02 - . g271 C.avellana_Jefferson_00012 AUGUSTUS transcript 9880 14061 0.02 - . g271.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 9880 9880 . - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS exon 9880 10753 . - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 10481 10483 . - 0 transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS intron 10754 11986 0.48 - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS intron 12089 12481 0.9 - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS intron 12659 12965 0.97 - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS intron 13095 13358 0.93 - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS intron 13536 13678 0.49 - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS CDS 10481 10753 1 - 0 transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS CDS 11987 12088 0.48 - 0 transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS exon 11987 12088 . - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS CDS 12482 12658 0.93 - 0 transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS exon 12482 12658 . - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS CDS 12966 13094 0.93 - 0 transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS exon 12966 13094 . - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS CDS 13359 13535 0.49 - 0 transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS exon 13359 13535 . - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS CDS 13679 14005 0.45 - 0 transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS exon 13679 14061 . - . transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 14003 14005 . - 0 transcript_id "g271.t1"; gene_id "g271"; C.avellana_Jefferson_00012 AUGUSTUS tss 14061 14061 . - . transcript_id "g271.t1"; gene_id "g271"; # protein sequence = [MSYRRGQQGTISRHSAIIVDEDDGDGXXXXXXXXXXXXXXXKRPIQRPQALRPSSSLAAKAIRASSAYRXXXXXXXXX # XXXXXXXXXXXXXXXNPTTGSSSPSVSGTVQDSKPYEYTSMKSLNESKHGFWGALARKAKAILDEDTAPQQVQTPERTRQHMHGTETMGKYQNSNNSD # ESHQKMDSPKLQKKGLGAIASSLNYIGGTIGNALEEGLTIMESRTADIIQETRKHIKKKPSGSEVQSQAPNHSSQWQQPQMQTDQELQLKASRDVAMA # MAAKAKLLLRELKTVKSDLAFAKERCAQLEIRLQLETLLAEKARLAHENSVYARENRFLREVVEYHQLTMQDVVYLNEGTEEVTEVYPIMAPSGSNLI # SISSSSSSPQLPSSLPPGAVPK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g271 ### # start gene g272 C.avellana_Jefferson_00012 AUGUSTUS gene 25686 29901 0.07 - . g272 C.avellana_Jefferson_00012 AUGUSTUS transcript 25686 29901 0.07 - . g272.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 25686 25686 . - . transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS exon 25686 26048 . - . transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 25874 25876 . - 0 transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS intron 26049 26917 0.78 - . transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS intron 28012 28103 1 - . transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS intron 28223 28507 0.55 - . transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS intron 28647 29591 0.49 - . transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS CDS 25874 26048 0.78 - 1 transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS CDS 26918 28011 0.78 - 0 transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS exon 26918 28011 . - . transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS CDS 28104 28222 1 - 2 transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS exon 28104 28222 . - . transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS CDS 28508 28646 0.55 - 0 transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS exon 28508 28646 . - . transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS CDS 29592 29870 0.44 - 0 transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS exon 29592 29901 . - . transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 29868 29870 . - 0 transcript_id "g272.t1"; gene_id "g272"; C.avellana_Jefferson_00012 AUGUSTUS tss 29901 29901 . - . transcript_id "g272.t1"; gene_id "g272"; # protein sequence = [MRRRRSARIWALEXXXXXXXXXXXXQKACATKSNDEMMMIGFGVPHSEDCEVVEEHRLSRPPTVRQYDRRRVRKRKRL # EDVVVTSLAYPSHDHARAIQELAHRVFHALRSDPENFELEFSQTRRRPGRKPLGEPTKLVRWSGDGFETERRRTYMPWTCYSSENDSIVSSLYSAPKP # LFHISDGDLGYKESLMRFVKDLGPTAQMVANKKLAKYLQNIEASNSQSQTPNCLAPAPSLTQTQAPANNNLDGAYKGKMACIDSTNSLRDMVPSSDIM # GICGNPQRENAYFNNIKDIVKIGSSGEIGANARENMDIYTRSKGKMICTSTTDENMDLHGNGRYDTNQNQNREILRLGVHSPQLIGNENINININSTP # AGINWNTNIGSKYKPTDMMAAELQSRLLELMCRSNNYSNISFLPPQASKLLGTQATTSNMHGLGSQNEGGGGGGAQSLKWSRPTNTIQQLAICDFPNV # QMQLNKDKLFGQGTVLQQASHLETAHKMALLHAMSFYEEATPESHQAEASAQCFQGIQGQSLTDTKHLDLALQLKALQCLNQCSLVNQVWNSRCIASY # RSPNLEAFSQCTLQKNNYLDQLDAKIPEKMCPP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g272 ### # start gene g273 C.avellana_Jefferson_00012 AUGUSTUS gene 31552 34721 0.08 - . g273 C.avellana_Jefferson_00012 AUGUSTUS transcript 31552 34721 0.08 - . g273.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 31552 31552 . - . transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS exon 31552 31849 . - . transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 31706 31708 . - 0 transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS intron 31850 32277 0.95 - . transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS intron 32414 33985 0.73 - . transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS CDS 31706 31849 0.95 - 0 transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS CDS 32278 32413 1 - 1 transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS exon 32278 32413 . - . transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS CDS 33986 34293 0.62 - 0 transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS exon 33986 34721 . - . transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 34291 34293 . - 0 transcript_id "g273.t1"; gene_id "g273"; C.avellana_Jefferson_00012 AUGUSTUS tss 34721 34721 . - . transcript_id "g273.t1"; gene_id "g273"; # protein sequence = [MRRGGEDKIWWILSRKGKFDVRSFYNVLVSKEAGSFPWKSIWCTKAPLRVAFLTWTEVLGRILTIDNLKKRNLIVINK # CCLCKIDEESIDHLILHCEIARSLWLCDEATSALDSTTEAEILTALKSLSNNRTSVFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLVSKAGRYAQL # WGQQNNTVDALDTAIKFEA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g273 ### # start gene g274 C.avellana_Jefferson_00012 AUGUSTUS gene 36423 39591 0.03 - . g274 C.avellana_Jefferson_00012 AUGUSTUS transcript 36423 39591 0.03 - . g274.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 36423 36423 . - . transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS exon 36423 37015 . - . transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 36889 36891 . - 0 transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS intron 37016 37105 0.53 - . transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS intron 38606 38712 1 - . transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS intron 38778 39271 0.96 - . transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS intron 39365 39473 0.5 - . transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS CDS 36889 37015 0.53 - 1 transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS CDS 37106 38605 0.53 - 1 transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS exon 37106 38605 . - . transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS CDS 38713 38777 0.98 - 0 transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS exon 38713 38777 . - . transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS CDS 39272 39364 0.51 - 0 transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS exon 39272 39364 . - . transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS CDS 39474 39485 0.55 - 0 transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS exon 39474 39591 . - . transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 39483 39485 . - 0 transcript_id "g274.t1"; gene_id "g274"; C.avellana_Jefferson_00012 AUGUSTUS tss 39591 39591 . - . transcript_id "g274.t1"; gene_id "g274"; # protein sequence = [MKEEVYDAARRAAIHDTIMKFPEKYSTVVGERGLKLSGGEKQRVALARAFLKSPAIIYINATFISLIPKVPGASEFKE # FRPISLISGTYKIIAKVLANRLRRVVDRVISKPQNAFVKGRQITDSVLIASECLDSRINLGESGLLCKLDMEKAYDHIDWKFLLYLLRRCGFREKWCS # WIERCISTARFFVLINGTPSGFFRSSRGVRQGDPLSPFLFVIIMEAFSRMIAAAIDNGLISGFSVGANMSERVTIXXXXXXXXXXXXXXXXXXXXXXX # XXXXXXXXXXXXXXXXXXXXXXXXXGEVANMGELAGVLGCGIASLPLKYLGLPLGASFKAKTIWDDTLEKVEHRLASWKRLYLSKGGRVTLIKSTLSN # FLTYLLSLFPLPASVAKRIEKFQRDFLWGGLNEEFKYHLVNWDKVCSPISKAGLGIRKLRVFNQALLGKWLWRYVHEREAWWRIVVDAKFGSEWGGWH # SVDTPGPHGVGLWRHIRRGWRVFSKHIKFDPGDGSHIRFWDDVWYGDTILKETLPGLYNIVNAKDASIADNLELTGGTLQWNVSLFRSYFAGLLCACS # PPTFHCWAFRRIPAKMSFQRPFDFRFPTCA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g274 ### # start gene g275 C.avellana_Jefferson_00012 AUGUSTUS gene 47646 50390 0.01 + . g275 C.avellana_Jefferson_00012 AUGUSTUS transcript 47646 50390 0.01 + . g275.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 47646 47646 . + . transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS exon 47646 48085 . + . transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 47751 47753 . + 0 transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS intron 48086 48325 0.97 + . transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS intron 48503 48953 0.27 + . transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS CDS 47751 48085 0.62 + 0 transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS CDS 48326 48502 0.57 + 1 transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS exon 48326 48502 . + . transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS CDS 48954 49668 0.09 + 1 transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS exon 48954 50390 . + . transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 49666 49668 . + 0 transcript_id "g275.t1"; gene_id "g275"; C.avellana_Jefferson_00012 AUGUSTUS tts 50390 50390 . + . transcript_id "g275.t1"; gene_id "g275"; # protein sequence = [MEKAYDHMNWKFLIYLRRRCGFGEKWCSWIEHFISSVRFSVLINGSSSGFFGSSCGVRQGDPLSPFLFIVVMEAFSRM # INASISRGFINGFYVGAREPERVIVSHLLFADDTVKSKPSQICIGPIGPSWRLAGILGCGTSSLPLRYLGLPLEASFKLLAIWDDLLEKIARRFDPGL # GVKVKFWEDTWCGEMSLKEAFPGLFNIASNKDASIADIRECFNGMVHWNATFTRRIHDWEELVLASLFSLLYSSSIRGEEEDQMWWTPSSKGKFEVRS # FYRMXXXXXXXXXXXXXXXXXXXLFLLLYSSSIRGEEEDRMWLTPSSKGKFEVRSFYRMLVSKESNHFPWKSIWRTKAPSRVAFFAWSAALGKSLTLD # NVRKRGIVVINRXXXXXXXXXXXXXXXXXXXXXXXG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g275 ### # start gene g276 C.avellana_Jefferson_00012 AUGUSTUS gene 53700 54871 0.02 - . g276 C.avellana_Jefferson_00012 AUGUSTUS transcript 53700 54871 0.02 - . g276.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 53700 53700 . - . transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS exon 53700 54099 . - . transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 53899 53901 . - 0 transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS intron 54100 54178 1 - . transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS intron 54395 54494 0.81 - . transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS CDS 53899 54099 0.78 - 0 transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS CDS 54179 54394 0.81 - 0 transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS exon 54179 54394 . - . transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS CDS 54495 54806 1 - 0 transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS exon 54495 54871 . - . transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 54804 54806 . - 0 transcript_id "g276.t1"; gene_id "g276"; C.avellana_Jefferson_00012 AUGUSTUS tss 54871 54871 . - . transcript_id "g276.t1"; gene_id "g276"; # protein sequence = [MLGTAASRSRLRAPGLLLQCKILYPTASAATLLRSYRPPPIPLLRNSTIAFDAAAGGGPRPLDSNANWNIKRRTHPNL # LKAFLSDSPSYSSSPSRAARPYPQHPSSMLNGRLLFSTSTSKTDTTDSNKLEKAKGSPQNEVADTKIFRTLASYLWMKDNPEFRLRVLTALAFLVGAK # VLNVQVPFLFKLAIDWLTTATGNATALASFTTANSTALVLFATPAAVLIGYGIARTGASAFNGTTA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g276 ### # start gene g277 C.avellana_Jefferson_00012 AUGUSTUS gene 60046 61112 0.08 + . g277 C.avellana_Jefferson_00012 AUGUSTUS transcript 60046 61112 0.08 + . g277.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 60046 60046 . + . transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS exon 60046 60319 . + . transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 60137 60139 . + 0 transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS intron 60320 60652 0.42 + . transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS intron 60749 60841 0.42 + . transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS CDS 60137 60319 0.43 + 0 transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS CDS 60653 60748 0.47 + 0 transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS exon 60653 60748 . + . transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS CDS 60842 60916 0.42 + 0 transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS exon 60842 61112 . + . transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 60914 60916 . + 0 transcript_id "g277.t1"; gene_id "g277"; C.avellana_Jefferson_00012 AUGUSTUS tts 61112 61112 . + . transcript_id "g277.t1"; gene_id "g277"; # protein sequence = [MAAAACLNYGAPGSLNLQQKQQKVRKKCFIDITTMGKRNIMVIGVKRGSGYGKAKKRINGMAHFGKQPIVRWYFPPEV # DYRLAALPPDAKGFVVLSKSELQFLALLPNLRAKSQGHC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g277 ### # start gene g278 C.avellana_Jefferson_00012 AUGUSTUS gene 62180 65111 0.12 - . g278 C.avellana_Jefferson_00012 AUGUSTUS transcript 62180 65111 0.12 - . g278.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 62180 62180 . - . transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS exon 62180 62778 . - . transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 62602 62604 . - 0 transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS intron 62779 62898 0.9 - . transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS intron 63024 63463 0.9 - . transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS intron 63670 64647 0.93 - . transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS intron 64773 64871 0.99 - . transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS CDS 62602 62778 0.97 - 0 transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS CDS 62899 63023 0.88 - 2 transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS exon 62899 63023 . - . transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS CDS 63464 63669 0.93 - 1 transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS exon 63464 63669 . - . transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS CDS 64648 64772 0.99 - 0 transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS exon 64648 64772 . - . transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS CDS 64872 64943 0.86 - 0 transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS exon 64872 65111 . - . transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 64941 64943 . - 0 transcript_id "g278.t1"; gene_id "g278"; C.avellana_Jefferson_00012 AUGUSTUS tss 65111 65111 . - . transcript_id "g278.t1"; gene_id "g278"; # protein sequence = [MQAMCQVYAAVSYICIGDAESYSQALDLIGPVYRMMDSFVGVREKTGVLFAYGLLLMKQHDLQESRNRLAKGLQLTHN # HLGNLQLVSQYLTILGSLALVLHDTVQSRDILRSSLTLAKKLYDIPTQIWVLSVLTALYRELDERGNEMENADYQRKKVDDLQRRLADSHSSIHHIEL # IDKARLEAQQFHERATTGPSMRVNLDIPESIGLLTPLPAPSSSRLVDLDTGRRGKRKI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g278 ### # start gene g279 C.avellana_Jefferson_00012 AUGUSTUS gene 65483 69971 0.06 - . g279 C.avellana_Jefferson_00012 AUGUSTUS transcript 65483 69971 0.06 - . g279.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 65483 65483 . - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS exon 65483 65752 . - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 65681 65683 . - 0 transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS intron 65753 65852 0.34 - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS intron 66177 67672 0.88 - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS intron 67795 67894 0.97 - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS intron 67934 68290 0.99 - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS intron 68793 68982 0.9 - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS intron 69100 69233 0.98 - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS intron 69376 69576 1 - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS CDS 65681 65752 0.34 - 0 transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS CDS 65853 66176 0.52 - 0 transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS exon 65853 66176 . - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS CDS 67673 67794 0.96 - 2 transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS exon 67673 67794 . - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS CDS 67895 67933 0.97 - 2 transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS exon 67895 67933 . - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS CDS 68291 68792 0.91 - 0 transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS exon 68291 68792 . - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS CDS 68983 69099 0.99 - 0 transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS exon 68983 69099 . - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS CDS 69234 69375 0.99 - 1 transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS exon 69234 69375 . - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS CDS 69577 69953 1 - 0 transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS exon 69577 69971 . - . transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 69951 69953 . - 0 transcript_id "g279.t1"; gene_id "g279"; C.avellana_Jefferson_00012 AUGUSTUS tss 69971 69971 . - . transcript_id "g279.t1"; gene_id "g279"; # protein sequence = [MEAVAEGLWGLADYHESTGEIGKAVKCLEAICQSHVSFFPIVEVKTRLRIATLLLKHSHNVTHAKSHLERSQLLLKSI # PSCFDLKCRAYSLLSQCYHLVGAIPPQKHILNKALDLTASAAAANHDQVSVKLWSCNFNAQLANALIIEGDYQSSIAALECGYVCATQISYPELQMFF # ATSVLHVHLMQWDDENLVEQAVNRCDHVWESINPNKIQQCLGLLFYNELLHVFYRFRICDYKNVQQHVDKLDAAMKADLQQTRHVQELSEELNALNQS # LSRSDLHYRDRSALSEKQARLQERLKSMTRLTSTGKHYLEPAHFGNVRGTWEDKLELAPPPIDGEWLPKSAIYALVDLMVVIFGRPKGLFKECGKRIQ # TGMYTIQEELVKLGITESVREVDLQHSAIWMAGVYLMLLMQFLENKVAIELTRSEFVEAQESDLLHSGLLLCARVPPSHTPACSAPLQPVHLHASAPE # RLWCSCHCSPPRFEDHMAACWLPALQLLGCWFCLLRSHFEFADGFVEVFRSCYGDVIYTFIAGFLLQDVKMKSAVSYCRVSGLSLGQRANSQPD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g279 ### # start gene g280 C.avellana_Jefferson_00012 AUGUSTUS gene 72036 74425 0.08 + . g280 C.avellana_Jefferson_00012 AUGUSTUS transcript 72036 74425 0.08 + . g280.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 72036 72036 . + . transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS exon 72036 72442 . + . transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 72142 72144 . + 0 transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS intron 72443 72576 0.94 + . transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS intron 72798 72909 0.72 + . transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS intron 73110 73475 0.55 + . transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS intron 73717 73812 1 + . transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS CDS 72142 72442 1 + 0 transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS CDS 72577 72797 0.68 + 2 transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS exon 72577 72797 . + . transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS CDS 72910 73109 0.56 + 0 transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS exon 72910 73109 . + . transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS CDS 73476 73716 0.97 + 1 transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS exon 73476 73716 . + . transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS CDS 73813 74238 1 + 0 transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS exon 73813 74425 . + . transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 74236 74238 . + 0 transcript_id "g280.t1"; gene_id "g280"; C.avellana_Jefferson_00012 AUGUSTUS tts 74425 74425 . + . transcript_id "g280.t1"; gene_id "g280"; # protein sequence = [MTWAMELQFDGKIFISLALIGLIGLLIRLNDALVVKPERLRSMLRKQGISGPPPTLLLGNIREIRKAQSTILKAPTTE # LPVSHNCAALLFPFFEKWRKQYGKVFLFSLGNTQISFVNQPEVVREITTCTSLDLGKPSYQQKERGPLLGQGILTSNGAVWAYQRKILSPELYMEKGM # MNLITQSTIMLNSWKSRIEAEGGTADIKIDEFMRRFSGDVISRACFGSKYYSKGEEIFLKLRALQQLVLEGAKSSDLSPEATDRFITDNCKNIYLAGY # ETTAVAATWCLMLLASNLEWQQRVHAEVLDICAGGIPDADMLRRMKQLTMVINESLRLYPPVAVVSRESFKDMKFGDINVPKGVNLWTLVLTLHTDPD # IWGADADRFNPERFGNGITGAYKLPHLYMPFGVGPRVCLGQNLAMVELKILISLILSNFSFSLSPNYRHAPALRLVIEPEHGVALLVRKL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g280 ### # start gene g281 C.avellana_Jefferson_00012 AUGUSTUS gene 75072 77371 0.04 - . g281 C.avellana_Jefferson_00012 AUGUSTUS transcript 75072 77371 0.04 - . g281.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 75072 75072 . - . transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS exon 75072 75488 . - . transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 75293 75295 . - 0 transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS intron 75489 76194 0.98 - . transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS intron 76428 77040 0.55 - . transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS CDS 75293 75488 0.98 - 1 transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS CDS 76195 76427 0.98 - 0 transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS exon 76195 76427 . - . transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS CDS 77041 77295 0.48 - 0 transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS exon 77041 77371 . - . transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 77293 77295 . - 0 transcript_id "g281.t1"; gene_id "g281"; C.avellana_Jefferson_00012 AUGUSTUS tss 77371 77371 . - . transcript_id "g281.t1"; gene_id "g281"; # protein sequence = [MFGLAIPTLGSWSSMVIHVPTRTQTQYGGGGGAAAIGKGSRSRSSFGNCNKCRGFXXXXXXXXXVKTAVAAVDSDHLS # SSNSADKQQANKYYFVVANAKFMLDEEEHFQELLSERLRLYGERNKEQDFWLVIEPKFLDKFPSITKRLRRPAVALVSTNGPWITFMKLRLDRVLSES # FEADSPEEALASNPTNLEFEKPEKWVAPYPKYEFGWWEPFLPPGSREEVKV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g281 ### # start gene g282 C.avellana_Jefferson_00012 AUGUSTUS gene 89006 90296 0.2 + . g282 C.avellana_Jefferson_00012 AUGUSTUS transcript 89006 90296 0.2 + . g282.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 89006 89006 . + . transcript_id "g282.t1"; gene_id "g282"; C.avellana_Jefferson_00012 AUGUSTUS exon 89006 89603 . + . transcript_id "g282.t1"; gene_id "g282"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 89160 89162 . + 0 transcript_id "g282.t1"; gene_id "g282"; C.avellana_Jefferson_00012 AUGUSTUS intron 89604 89922 0.61 + . transcript_id "g282.t1"; gene_id "g282"; C.avellana_Jefferson_00012 AUGUSTUS CDS 89160 89603 0.83 + 0 transcript_id "g282.t1"; gene_id "g282"; C.avellana_Jefferson_00012 AUGUSTUS CDS 89923 90066 0.77 + 0 transcript_id "g282.t1"; gene_id "g282"; C.avellana_Jefferson_00012 AUGUSTUS exon 89923 90296 . + . transcript_id "g282.t1"; gene_id "g282"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 90064 90066 . + 0 transcript_id "g282.t1"; gene_id "g282"; C.avellana_Jefferson_00012 AUGUSTUS tts 90296 90296 . + . transcript_id "g282.t1"; gene_id "g282"; # protein sequence = [MWRRLWISSGAVKQSVSAVFSQVNGRKRKPRAHHILGLRAIIPASSSSLVWLRDLSSSSSCADSNSGSGNSISFAEAK # RLMRLVNVEALKTKLGMEGKEVIGYSELLEACESMGVARSPEEAAAFARVLDEAGVVLLFRDKVYLHPDKSTFSSDCMYKFYFLTGCVKGGFNWLEQR # LRPLGQTEILEDPFVLTLA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g282 ### # start gene g283 C.avellana_Jefferson_00012 AUGUSTUS gene 91797 97011 0.01 - . g283 C.avellana_Jefferson_00012 AUGUSTUS transcript 91797 97011 0.01 - . g283.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 91797 91797 . - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS exon 91797 92551 . - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 92017 92019 . - 0 transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS intron 92552 92680 0.42 - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS intron 92791 93129 0.42 - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS intron 93184 93273 0.42 - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS intron 93457 94208 0.23 - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS intron 94604 94967 0.7 - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS intron 95057 95126 0.6 - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS CDS 92017 92551 0.58 - 1 transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS CDS 92681 92790 0.39 - 0 transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS exon 92681 92790 . - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS CDS 93130 93183 0.61 - 0 transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS exon 93130 93183 . - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS CDS 93274 93456 0.11 - 0 transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS exon 93274 93456 . - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS CDS 94209 94603 0.18 - 2 transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS exon 94209 94603 . - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS CDS 94968 95056 0.62 - 1 transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS exon 94968 95056 . - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS CDS 95127 95485 0.27 - 0 transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS exon 95127 95599 . - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 95483 95485 . - 0 transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS exon 96886 97011 . - . transcript_id "g283.t1"; gene_id "g283"; C.avellana_Jefferson_00012 AUGUSTUS tss 97011 97011 . - . transcript_id "g283.t1"; gene_id "g283"; # protein sequence = [MKYLGLPLGVPYKDTVMWNDVIEKMEHQMAGWKRMYLSKGGRLILIKSTLSNLPTYFLWGGMGDEPKLHLVNWNQVCR # PLHYGGLGIQKLHQFNKALLEKWLWRYAYESKALWFKVIKANIFDKVGVPLPKAFDLRWVWGQKFVSGMIFGTVDRICWALSKKGKFEVKSLFKALSN # FDHKVFPWKSIWRTKVPVRVAFFGWTAALGKILTHDNLRKRNLVVVEWCYMCKKTGESVDLLLHCETARTLWHTIFSRFGLHWVMPCRVRDLFDCWWL # GGCARSAWRPKVDDLSVSSIDDEERIWKEREFEEGEVWKVVRNFNGDKASGPDGFTMAFFQKCWEVVKKAGTVEIKDFRPITLVGEQLKKITTEGISL # SPLLFVVVVEAFSRMMSATVEKGLLDIGLKINLFKSEIVPVGDVCDVASVASILGCGVASLQIKYLGLPLGAHYKVSTIWSSIIEKIENRLAGWNRLY # LSKGGRLTLIKTLSNLPTYYLPLFPISVGVANRLEKLQRDFLWGGIGDEFKFHLVNWSKICTPKNSSFIWTSGYGGLLRKWMLCGGSWWASNMIVQGV # VGVPRR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g283 ### # start gene g284 C.avellana_Jefferson_00012 AUGUSTUS gene 97746 99350 0.02 + . g284 C.avellana_Jefferson_00012 AUGUSTUS transcript 97746 99350 0.02 + . g284.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 97746 97746 . + . transcript_id "g284.t1"; gene_id "g284"; C.avellana_Jefferson_00012 AUGUSTUS exon 97746 97793 . + . transcript_id "g284.t1"; gene_id "g284"; C.avellana_Jefferson_00012 AUGUSTUS exon 98536 98626 . + . transcript_id "g284.t1"; gene_id "g284"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 98546 98548 . + 0 transcript_id "g284.t1"; gene_id "g284"; C.avellana_Jefferson_00012 AUGUSTUS intron 98627 98728 0.4 + . transcript_id "g284.t1"; gene_id "g284"; C.avellana_Jefferson_00012 AUGUSTUS CDS 98546 98626 0.35 + 0 transcript_id "g284.t1"; gene_id "g284"; C.avellana_Jefferson_00012 AUGUSTUS CDS 98729 99214 0.99 + 0 transcript_id "g284.t1"; gene_id "g284"; C.avellana_Jefferson_00012 AUGUSTUS exon 98729 99350 . + . transcript_id "g284.t1"; gene_id "g284"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 99212 99214 . + 0 transcript_id "g284.t1"; gene_id "g284"; C.avellana_Jefferson_00012 AUGUSTUS tts 99350 99350 . + . transcript_id "g284.t1"; gene_id "g284"; # protein sequence = [MIFAIKVPIVGVDFEKEMDLGFEQVIRVVDLVRRAVPLALTSEDDPVRDELKKLQEKKEDIDVLAHKQVRRILWSGLG # FAVVQVGLFFRLTFWEFSWDVMEPIAFFATTTGIVIGYAYFLFTSRDPTYQDLFKRLFLSRQRKLFQKQNFDIERFKELQKKCKTPLDATAPIKNRVG # LELELEDAIHRD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g284 ### # start gene g285 C.avellana_Jefferson_00012 AUGUSTUS gene 102156 116996 0.01 + . g285 C.avellana_Jefferson_00012 AUGUSTUS transcript 102156 116996 0.01 + . g285.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 102156 102156 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 102156 102308 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 102240 102242 . + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 102309 102421 0.59 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 102577 102952 0.82 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 103115 105058 0.98 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 105307 105412 1 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 105509 105597 0.97 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 105739 106126 0.43 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 106212 106316 0.76 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 106390 106467 0.72 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 106681 106765 0.7 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 106874 109251 0.43 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 109547 110595 0.32 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 110787 110895 0.99 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 111128 111234 0.91 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 111418 111492 0.82 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 111549 111668 0.54 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 112073 112664 0.98 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 112929 113793 0.86 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 114347 114426 0.64 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 114670 115003 0.68 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 115189 115511 0.42 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS intron 115745 116694 0.78 + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 102240 102308 0.58 + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 102422 102576 0.82 + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 102422 102576 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 102953 103114 1 + 1 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 102953 103114 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 105059 105306 1 + 1 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 105059 105306 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 105413 105508 1 + 2 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 105413 105508 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 105598 105738 0.61 + 2 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 105598 105738 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 106127 106211 0.64 + 2 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 106127 106211 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 106317 106389 0.73 + 1 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 106317 106389 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 106468 106680 0.53 + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 106468 106680 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 106766 106873 0.83 + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 106766 106873 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 109252 109546 0.71 + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 109252 109546 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 110596 110786 0.42 + 2 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 110596 110786 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 110896 111127 1 + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 110896 111127 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 111235 111417 0.78 + 2 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 111235 111417 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 111493 111548 0.81 + 2 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 111493 111548 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 111669 112072 0.53 + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 111669 112072 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 112665 112928 0.96 + 1 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 112665 112928 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 113794 114346 0.49 + 1 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 113794 114346 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 114427 114669 0.46 + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 114427 114669 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 115004 115188 0.45 + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 115004 115188 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 115512 115744 0.43 + 1 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 115512 115744 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS CDS 116695 116906 0.87 + 2 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS exon 116695 116996 . + . transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 116904 116906 . + 0 transcript_id "g285.t1"; gene_id "g285"; C.avellana_Jefferson_00012 AUGUSTUS tts 116996 116996 . + . transcript_id "g285.t1"; gene_id "g285"; # protein sequence = [MYLCLPSQVFASTAEISSSWQLEVSPLNDIEKILDCEMRPTVADDSDASKLGSKQIFVKQYLVKWKGLSYLHCTWVPE # KEFLKAFKTHPRLKTKVNNFHRQMASSNNSDEDFVAIRPEWTTVDRILGCRGDDDEKQYFVKWKELPYDECYWEFESDISAFQPEIERFNRMQSRNTK # LSSSKQKSSLKDAMESRKKQKEFQQYEHSPDFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENLKPHLVVAPLSTLR # NWEREFATWAPQMNVVLGVKFVEIVWGMGVSGNFDVPSIILDGVGFGGRILSTNPVGSAVEILAAPAPGVMYVGSAQARAVIREYEFYFPKKHKKIKK # KKSGQVFSESKQDRIKFDVLLTSYEMINLDSASLKPIKWEVMIVDEGHRLKNKDSKLFSSMKQYLSRHRVLLTGTPLQTKSLNKYYKFRNGPPVNFKH # LCYIFEGSTSIGKWRYARTQSPPGSDCEDNGIHLNNPVAIIDLTEPQCASAHKTKGKGKLKREGSHLQGSHSNKCSSKVMAQCHTQWMVTDRLQRSLH # TISVYINRTVKALCRLGKTIIRLAAMVLPHPYVARNSRYYPWFMKCIGAIDGTHIKACVQGENIVPYKSRKSTITQNVMCVPDFNLCFTYVYAGWEGC # THDLRIFQKCIQDPTALFPMPVEGENIVPYRSRKSTITQNVMCVVDFDLCFTYVYAGWEGNTHDSRIFQECIEDPTALFPMPVEDNEPQEVLQIPKWP # PDELQGSTSTGKLRYASTQSPPGSDCEENDINLNNFAAIIDLTELHCASSHKARGKGKGKLKREGSHLHGSNSSKRSSKSEQIISELRSEYDVLRSDY # LQRCKLSDGHSPGDCGSYKPPPNQYPEEAIMDRINMSKHARRHVDMYAAGPSNGNIGNRRHWADSIDELPDSDASDTDDEDECNFEGIRFELENLLVR # MAMIVEECYYHFMQPCTRVCIPQQTSKLTGAMPVDMYAADPSNGNIGNRRHWANSIDELPNSDASDTNDEDECNFEGIRFELKNLLVRMAMIVEECYY # HFMHPCARICIPQRTSKLTGAMWVHWVLTNPNPTTCYKQFRMLPKTFLKLCNTLKHNEFLQSSRYIKITEQVAAFCLVMAQCXXXXLHSTANFQADWG # DVGTLGAYQSEPNYMPMSNFITEQVVAFCHVMAQCHTQRVVADRLQRSLHTISVYVNWTAKALCRLGKTIIPPAAIELTHSYVARNGRYYPWFAVRHX # XXXAWENYYMFSCDGVASSIRCPKWPLXXXXTAKALCRLGKTIIRPAAMELPHPYVARNSRYYPWSVSRIPPLFSPCRSKVLYGAMSXXXXHFTITQN # VMCVVDFDLCFTYIYAGWEGSTHDSRIFQECIEDPTALFPMPVEDCGADDPLFRAALMKHYGQDWINVAQLPTMTPVLYVAHGLPPNRTRESKEMMII # VREAMTSHMWTTANEE] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/22 # CDS introns: 0/21 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g285 ### # start gene g286 C.avellana_Jefferson_00012 AUGUSTUS gene 121246 127534 0.04 + . g286 C.avellana_Jefferson_00012 AUGUSTUS transcript 121246 127534 0.04 + . g286.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 121246 121246 . + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS exon 121246 121646 . + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 121299 121301 . + 0 transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS intron 121647 124334 0.54 + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS intron 124421 124702 0.98 + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS intron 124782 126091 0.9 + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS intron 126254 126608 0.64 + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS intron 126666 126862 0.88 + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS CDS 121299 121646 0.62 + 0 transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS CDS 124335 124420 0.92 + 0 transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS exon 124335 124420 . + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS CDS 124703 124781 0.9 + 1 transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS exon 124703 124781 . + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS CDS 126092 126253 0.65 + 0 transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS exon 126092 126253 . + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS CDS 126609 126665 0.89 + 0 transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS exon 126609 126665 . + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS CDS 126863 127078 0.96 + 0 transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS exon 126863 127534 . + . transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 127076 127078 . + 0 transcript_id "g286.t1"; gene_id "g286"; C.avellana_Jefferson_00012 AUGUSTUS tts 127534 127534 . + . transcript_id "g286.t1"; gene_id "g286"; # protein sequence = [MAGCSNNCPFGTLHDGANKELIVLVQITTDDLLQAAQIEERGMLDRKDRSLETWKQVAINEAAMAVVAVNFPDLKNIE # FVWSLNSSIFTFFYHINSHSYVAALLFISIILVRIGTEVTIAPRAGRELGYVRMKMDPIKFNEGMLTRQSLLDHITVQLAPRAADEIWYGEGQMSTIW # AETADNARSEARTLVLGGLSEKYHGLSDFWVAERINVMDSLCIFQFLLEEIDLEASRILNLCYECAKEILLQNRKLMDALVAELVEKKSLTKNELSHL # VELHGSLKPMPPSILDIRTEKRMKFQEKIMKQNEAAVGSNV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g286 ### # start gene g287 C.avellana_Jefferson_00012 AUGUSTUS gene 128386 129655 0.36 + . g287 C.avellana_Jefferson_00012 AUGUSTUS transcript 128386 129655 0.36 + . g287.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 128386 128386 . + . transcript_id "g287.t1"; gene_id "g287"; C.avellana_Jefferson_00012 AUGUSTUS exon 128386 128665 . + . transcript_id "g287.t1"; gene_id "g287"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 128461 128463 . + 0 transcript_id "g287.t1"; gene_id "g287"; C.avellana_Jefferson_00012 AUGUSTUS intron 128666 129202 1 + . transcript_id "g287.t1"; gene_id "g287"; C.avellana_Jefferson_00012 AUGUSTUS CDS 128461 128665 0.79 + 0 transcript_id "g287.t1"; gene_id "g287"; C.avellana_Jefferson_00012 AUGUSTUS CDS 129203 129588 1 + 2 transcript_id "g287.t1"; gene_id "g287"; C.avellana_Jefferson_00012 AUGUSTUS exon 129203 129655 . + . transcript_id "g287.t1"; gene_id "g287"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 129586 129588 . + 0 transcript_id "g287.t1"; gene_id "g287"; C.avellana_Jefferson_00012 AUGUSTUS tts 129655 129655 . + . transcript_id "g287.t1"; gene_id "g287"; # protein sequence = [MKKVNMASLLGIFCTSAMAILAAMSVGVIAVKEFKVGGKGGWMVPDATNTAMYSQWAERHRFHIGDSLTFEYNNDSVL # VVDKYDYYHCNTTDPITAFSGGNRAVVKLDRPGPFYFISGAPDHCNNGQRLLVDVMSPHRRHPIAPSPPSVAFPPETDKQGPSPSPSTSSGVVVSATL # SSVSRVLIAGFVTFLWSALL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g287 ### # start gene g288 C.avellana_Jefferson_00012 AUGUSTUS gene 131611 136051 0.09 - . g288 C.avellana_Jefferson_00012 AUGUSTUS transcript 131611 136051 0.09 - . g288.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 131611 131611 . - . transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS exon 131611 132654 . - . transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 131773 131775 . - 0 transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS intron 132655 133886 0.99 - . transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS intron 134303 135425 0.98 - . transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS intron 135628 135688 0.98 - . transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS CDS 131773 132654 1 - 0 transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS CDS 133887 134302 0.98 - 2 transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS exon 133887 134302 . - . transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS CDS 135426 135627 0.98 - 0 transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS exon 135426 135627 . - . transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS CDS 135689 135955 0.99 - 0 transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS exon 135689 136051 . - . transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 135953 135955 . - 0 transcript_id "g288.t1"; gene_id "g288"; C.avellana_Jefferson_00012 AUGUSTUS tss 136051 136051 . - . transcript_id "g288.t1"; gene_id "g288"; # protein sequence = [MEKFCSKEQXXXXIAKNDRRAFMSIVGENGEILQQRAGNSSHTVLHLASRFGHIQMVTDIVKLRPDMVAAENSRQETP # LHEACRQGNLKVAMLLIDTNPWAACKLNSDRQSALFMACSHGHLKVVEFLLSRPWMRGLVEDDFGQNCLHVAVSRGHTGIVRQILDVCPNFAQKIDTN # GYSPLHCSCHRENLEITRMLLRLDADLALQYNNDGYTPLHLAAMKGNTAILKEFMSIAPTSFQYHTKKGDTVFHLIVRYNHYDAFFHLVHVFNDTSIF # HCPDQYGNTILHIAVSGGHHQIVEYLINKTTVDIRIQNHKGLTALDILDQDTENAQMKIIQQEVEKMCEIQENDISEPECSSKQTQSTQTTSLGQQKH # LSERRQEEVAEIYRSRQNKQDERYDEGVQNARNTIILVAILIATVTFAAGVTPPGGVHQDGRLEGKSIVCRTTAFKVFALSNNIALFSSLCIVVVLVS # IIPFQRKPQMMILTVAHKVLWISVSFMGTAYVAATLVILPKGMGAEWMFVASLSISGGALGTVFLGLTIMLVEHWCRKKKWKKERMRVGDALAKSRIR # SLYSFNSDLESSHRQGYHSY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g288 ### # start gene g289 C.avellana_Jefferson_00012 AUGUSTUS gene 138576 139251 0.12 + . g289 C.avellana_Jefferson_00012 AUGUSTUS transcript 138576 139251 0.12 + . g289.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 138576 138576 . + . transcript_id "g289.t1"; gene_id "g289"; C.avellana_Jefferson_00012 AUGUSTUS exon 138576 138748 . + . transcript_id "g289.t1"; gene_id "g289"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 138622 138624 . + 0 transcript_id "g289.t1"; gene_id "g289"; C.avellana_Jefferson_00012 AUGUSTUS intron 138749 138868 0.99 + . transcript_id "g289.t1"; gene_id "g289"; C.avellana_Jefferson_00012 AUGUSTUS CDS 138622 138748 0.99 + 0 transcript_id "g289.t1"; gene_id "g289"; C.avellana_Jefferson_00012 AUGUSTUS CDS 138869 139089 0.99 + 2 transcript_id "g289.t1"; gene_id "g289"; C.avellana_Jefferson_00012 AUGUSTUS exon 138869 139251 . + . transcript_id "g289.t1"; gene_id "g289"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 139087 139089 . + 0 transcript_id "g289.t1"; gene_id "g289"; C.avellana_Jefferson_00012 AUGUSTUS tts 139251 139251 . + . transcript_id "g289.t1"; gene_id "g289"; # protein sequence = [MKATSFSHPVRLSSNLNPSSIFRPINFPSHQRQPRLGFTDSTGLDFCTHGPRGAIRAVNFGMKSYVSPWDEKPYETLP # SGKRAYLDEEDIVTFLDPPKELIPLEPASYNPAAYLW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g289 ### # start gene g290 C.avellana_Jefferson_00012 AUGUSTUS gene 150956 155779 0.05 + . g290 C.avellana_Jefferson_00012 AUGUSTUS transcript 150956 155779 0.05 + . g290.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 150956 150956 . + . transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS exon 150956 152686 . + . transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 151455 151457 . + 0 transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS intron 152687 153601 0.92 + . transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS intron 153685 154022 0.94 + . transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS intron 155220 155301 0.5 + . transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS intron 155385 155569 0.72 + . transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS CDS 151455 152686 0.85 + 0 transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS CDS 153602 153684 0.95 + 1 transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS exon 153602 153684 . + . transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS CDS 154023 155219 0.48 + 2 transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS exon 154023 155219 . + . transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS CDS 155302 155384 0.72 + 2 transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS exon 155302 155384 . + . transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS CDS 155570 155671 0.72 + 0 transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS exon 155570 155779 . + . transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 155669 155671 . + 0 transcript_id "g290.t1"; gene_id "g290"; C.avellana_Jefferson_00012 AUGUSTUS tts 155779 155779 . + . transcript_id "g290.t1"; gene_id "g290"; # protein sequence = [MYETGCFDAMTEATVVAAAEAAISISEDGFSHTLPTCSHNTNNNFEENLRLSMEEFSYNHNHNHAHPPTHEDAAAAAT # AIGIELQQQLAFTMDDSYNATNHNNSHLVDNSYSVHEMRDMDQQQQLHQMDIQNGQQCFDYSSLPNRXXXXTPDLLNLFHLPRSISFSNPTQKTANYQ # NPIVFPGDVNPTGPDHSTGASVLYDPLFHLNLPPQPPMFRDLYQSLPNGYGLPVSRNNGSLFGAGGDEREGSGDGRQFENGVLEFTRDMGCIGKGRNG # ETKHFATERQRRQHLNDKYKALRSLVPNPSKVGIYTLSFLDFLLTLFINPFMLTILSAFLALYVNFFTTHMKTDRASVVGDAKDYIEELLRTVNELKL # LVEKKRCGRERSKRHKTEADEAAGDVESCNMKPLGDPDQQRRRKAGDKNLSGPKMYETGCFDAMTEAAATAMGIELQQQLAFNMDDSYNATNHNNTHL # VDNSYSVHEMRDMDRFNHHHHHNNHEDQQQQLQQMDIQNGQQCFDYSSLPNSPYPPTPDLLNLFHLPRSISFANPTQETANYQNPIVFTGDVNPTGPD # HATAASVLYDSLFHLNLPPQPPMFRDLFQSLPNGYGLQVPSSRNNGSLFGAGGDEREGSGDGFENGVLEFNTGMACIGKGRNGETKHIATDRQKRQLM # NDKFNALRSLVPNPTKVFTVSHFFDFLLTLLIINPFMLTTLSAFLAVYVNFFWGWGAESKLYIYVKTDRASVVADAIKYINELLRTVNELKLLAEKKR # CGRERSKRQKTEADDAAGDVESCNMKPLGHDPDQSYNGSLRSSWLQRKSKETEVDVRIIDDEVXXXXEIQRDGVLDELQLDLHHVAGGHIGDFYSFLF # NTKIYEGSSIYASSIANKLIEVVDRQCAAILPTNSY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g290 ### # start gene g291 C.avellana_Jefferson_00012 AUGUSTUS gene 158646 160686 0.06 + . g291 C.avellana_Jefferson_00012 AUGUSTUS transcript 158646 160686 0.06 + . g291.t1 C.avellana_Jefferson_00012 AUGUSTUS tss 158646 158646 . + . transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS exon 158646 159785 . + . transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 158883 158885 . + 0 transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS intron 159786 159925 0.97 + . transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS intron 160161 160242 0.49 + . transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS intron 160326 160529 0.98 + . transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS CDS 158883 159785 0.95 + 0 transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS CDS 159926 160160 0.46 + 0 transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS exon 159926 160160 . + . transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS CDS 160243 160325 0.98 + 2 transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS exon 160243 160325 . + . transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS CDS 160530 160634 1 + 0 transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS exon 160530 160686 . + . transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 160632 160634 . + 0 transcript_id "g291.t1"; gene_id "g291"; C.avellana_Jefferson_00012 AUGUSTUS tts 160686 160686 . + . transcript_id "g291.t1"; gene_id "g291"; # protein sequence = [MYETGCFDAMTEGTVVAAADAAISEDGFSQTLPTCSHNTHNSFEENLRLSMEEFSYNHNHANAPTHEDAAAAATAMGI # ELQQQLAFNMDDSYNANNHNITHLVDNSYSVHEMRDIDQQQQLHQMEIQNGQQCFDYSSLPNSPYPPAPDLLNLFHLPRSIPFSNPTQKTANYQNPMV # FTGDVNPTGPDHSTGASVLYDPLFHLNLPPQPTLFRDLYQSLPNGYGLPGSRNNASLFCAGGDEREGSGDGRQFENCVLEITRDKACIGKGKNGKTKH # IVTERQRRQHLNDRFEALRSLVPNPTKIDRASVVGDAIEYIKELLRTVNELKLLVEKKRCGRERSKRQKTEADDAAGDVESCYMKPLGDPDQSYKXXX # XEIQRDGVLDELQLDLHHIAGGHIGDFYSFLFNTKIYEGSSVYASSVANKLIEVLDRQCAANIPPASRY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g291 ### # start gene g292 C.avellana_Jefferson_00012 AUGUSTUS gene 161858 163571 0.12 - . g292 C.avellana_Jefferson_00012 AUGUSTUS transcript 161858 163571 0.12 - . g292.t1 C.avellana_Jefferson_00012 AUGUSTUS tts 161858 161858 . - . transcript_id "g292.t1"; gene_id "g292"; C.avellana_Jefferson_00012 AUGUSTUS exon 161858 163571 . - . transcript_id "g292.t1"; gene_id "g292"; C.avellana_Jefferson_00012 AUGUSTUS stop_codon 162126 162128 . - 0 transcript_id "g292.t1"; gene_id "g292"; C.avellana_Jefferson_00012 AUGUSTUS CDS 162126 163520 0.83 - 0 transcript_id "g292.t1"; gene_id "g292"; C.avellana_Jefferson_00012 AUGUSTUS start_codon 163518 163520 . - 0 transcript_id "g292.t1"; gene_id "g292"; C.avellana_Jefferson_00012 AUGUSTUS tss 163571 163571 . - . transcript_id "g292.t1"; gene_id "g292"; # protein sequence = [MSSKNVVPLICFAHYLMMTENHSRNNLLSKALAFFEKRVLPSWNETIKALRTMENIFQEAVNFGLVDACSESIIDKAL # VDPSLLGEPIKDDENVYRPNARRRLFDPEGQPDDLTMLPLQLYEPIMLEMSKRGAPSMYVAASLCTYARKWVFPMSKGSEKMSTNERNSSGEVIEAVE # MLLSHERGLLPCNLLFDMLQSAIILGANPHCIYGFEARIGKQLEEATAKDLLIPCQYDTECVRRILKIFYGNYTSSDISGLITVAELLEDFLAMAASE # KDLKLEAFVSLGEISSAASLGAQRSSDGIYRAVDIYLDQHRYLTESEREEVCRVLECQKMSLEACEHAAKNERLPLRVVVQVLFAGKLQLNDTITKDS # DDRLGKEEAAGNEDVAKVDCGGQQVRSEMKNMCSKVMGLERECHMMRKEIGSGSSRNVKKEKVSMWRDMKRKFGCISHDMHDLNCQTKKKNM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g292 ### # # ----- prediction on sequence number 13 (length = 154821, name = C.avellana_Jefferson_00013) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 13 on both strands # start gene g293 C.avellana_Jefferson_00013 AUGUSTUS gene 376 2457 0.4 + . g293 C.avellana_Jefferson_00013 AUGUSTUS transcript 376 2457 0.4 + . g293.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 376 376 . + . transcript_id "g293.t1"; gene_id "g293"; C.avellana_Jefferson_00013 AUGUSTUS exon 376 2457 . + . transcript_id "g293.t1"; gene_id "g293"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 619 621 . + 0 transcript_id "g293.t1"; gene_id "g293"; C.avellana_Jefferson_00013 AUGUSTUS CDS 619 2163 0.59 + 0 transcript_id "g293.t1"; gene_id "g293"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 2161 2163 . + 0 transcript_id "g293.t1"; gene_id "g293"; C.avellana_Jefferson_00013 AUGUSTUS tts 2457 2457 . + . transcript_id "g293.t1"; gene_id "g293"; # protein sequence = [MAHEEEEPKRVVQYPLDLESYKILDKVGASPCAVVYKAVCVPMNSTVVAIKAINLDQAWWWQSKPPPLSHPNVLNALC # SFTDDQHLWLVMPFMSAGSLQSIISSSFPDGLSEPCIAIILKQTLTALSFLHTQQHTHRDIKPGNILIDSNGSVKLSFFGLLASXXXXXXXXXXXXXX # XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPYWRAPEVIHSQQGYTVKADIWSFGITALELAHGRPPLSSSNHSNFSKAFK # EMVASCLHQDPSKRPSAETLLKHSFFENCGGLDFLVKNVLQGLPSLEQRFKGSKINIHAPLRSKNREVGDSSCSSGRQSIEQRRISSWSFNEDEFELD # PVYPTDSTDSVVKKVRFGGETILMETGELIPSLSRQVLEKATQVDYYSEAKNIMSNIEVMVETLVTLMRSLDVQRATVTAGMVQLRGEEGGEVSNEEQ # MAQVIERQRVELENETKSMSELEMELLVLKLQVGSYDGRSCGAD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g293 ### # start gene g294 C.avellana_Jefferson_00013 AUGUSTUS gene 9023 10981 0.05 - . g294 C.avellana_Jefferson_00013 AUGUSTUS transcript 9023 10981 0.05 - . g294.t1 C.avellana_Jefferson_00013 AUGUSTUS tts 9023 9023 . - . transcript_id "g294.t1"; gene_id "g294"; C.avellana_Jefferson_00013 AUGUSTUS exon 9023 10981 . - . transcript_id "g294.t1"; gene_id "g294"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 9434 9436 . - 0 transcript_id "g294.t1"; gene_id "g294"; C.avellana_Jefferson_00013 AUGUSTUS CDS 9434 10939 1 - 0 transcript_id "g294.t1"; gene_id "g294"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 10937 10939 . - 0 transcript_id "g294.t1"; gene_id "g294"; C.avellana_Jefferson_00013 AUGUSTUS tss 10981 10981 . - . transcript_id "g294.t1"; gene_id "g294"; # protein sequence = [MASLSCSADDLAQLLGPNTTNPTAAAAYLCSQFSTISDKFTDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKN # TMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNGFIGRHFFGLKDVPTQSFDYSSFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVV # SHWFWSTDGWASAFNTDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHSGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFTKILHH # YSSGSYYGQWSAVGRTAVTTTLAGSTAALTTLFSKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAAVVLISCNRLAEKLKFDDPLE # AAQLHGGCGAWGIIFTALFANEKYVNEVYPGKPGRPYGLFMGGGGKLLAAHVIQILVIVGWVSATMGPLFYALHKLKLLRISAEDEMAGMDMTRHGGF # AYIYHDDNDDSQKPGIQLRKIEPRATTPTSV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g294 ### # start gene g295 C.avellana_Jefferson_00013 AUGUSTUS gene 15710 27431 0.03 - . g295 C.avellana_Jefferson_00013 AUGUSTUS transcript 15710 27431 0.03 - . g295.t1 C.avellana_Jefferson_00013 AUGUSTUS tts 15710 15710 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS exon 15710 15977 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 15880 15882 . - 0 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS intron 15978 16065 0.31 - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS intron 16154 16828 0.83 - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS intron 16988 20039 0.5 - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS intron 20157 20241 1 - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS intron 20365 21835 0.94 - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS intron 22011 22798 0.34 - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS intron 23188 24138 0.95 - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS intron 24316 26777 0.99 - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS intron 26973 27054 1 - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS CDS 15880 15977 0.31 - 2 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS CDS 16066 16153 0.74 - 0 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS exon 16066 16153 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS CDS 16829 16987 0.83 - 0 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS exon 16829 16987 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS CDS 20040 20156 0.91 - 0 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS exon 20040 20156 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS CDS 20242 20364 1 - 0 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS exon 20242 20364 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS CDS 21836 22010 0.69 - 1 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS exon 21836 22010 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS CDS 22799 23187 0.46 - 0 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS exon 22799 23187 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS CDS 24139 24315 0.98 - 0 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS exon 24139 24315 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS CDS 26778 26972 1 - 0 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS exon 26778 26972 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS CDS 27055 27261 0.86 - 0 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS exon 27055 27431 . - . transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 27259 27261 . - 0 transcript_id "g295.t1"; gene_id "g295"; C.avellana_Jefferson_00013 AUGUSTUS tss 27431 27431 . - . transcript_id "g295.t1"; gene_id "g295"; # protein sequence = [MLSTNFTTFIVVSNVKEDLEEELVDEAEYYAWNEMRLHPLLMKSIYRLEFKEPTPIQKACIPAAAHQGKDVVGAAETG # SGKTLAFGLPILQRLLEEQEKAGKMLEKKGEEAENYAPKGFLRALIITPTRELALQVTDHLKAVANGTDIRVVAIVGGMSTEKQERLLKKRPEIIVGT # PGRLWELASGGEKHLVELHSLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSIEGHSQDTQDCVTVSSFQRKKRQTFVFSATIALSADFRKKLKRG # TLKPKQSLTDGLNSIETLSERAGMKANVAIIDLTNASIVADKLEESFIEEEDKDAYLYYILSVHGQGRTIVFCTSITATRHISSLLRILGINVWTVHR # EKQQRARLKAIDRFRGNEHAVLVATDILARGLDIANVRTVVHYQLPHSAEVYVHRSGRTARAFADGCSIALIAANETSKFASLCKSFSKAGVSPLLQD # QFEQLARQKLGSGGGSGEHKRRKLVVIGQDCVEPLQALRSAGHEVHMHVDMKEMAEKRRNVENLRRKRKEEKKRGGWQHLIVIFPLPGMRDQRRKQKK # KLKMGME] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g295 ### # start gene g296 C.avellana_Jefferson_00013 AUGUSTUS gene 27997 29621 0.07 - . g296 C.avellana_Jefferson_00013 AUGUSTUS transcript 27997 29621 0.07 - . g296.t1 C.avellana_Jefferson_00013 AUGUSTUS tts 27997 27997 . - . transcript_id "g296.t1"; gene_id "g296"; C.avellana_Jefferson_00013 AUGUSTUS exon 27997 28787 . - . transcript_id "g296.t1"; gene_id "g296"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 28459 28461 . - 0 transcript_id "g296.t1"; gene_id "g296"; C.avellana_Jefferson_00013 AUGUSTUS intron 28788 29402 0.9 - . transcript_id "g296.t1"; gene_id "g296"; C.avellana_Jefferson_00013 AUGUSTUS CDS 28459 28787 0.86 - 2 transcript_id "g296.t1"; gene_id "g296"; C.avellana_Jefferson_00013 AUGUSTUS CDS 29403 29574 0.91 - 0 transcript_id "g296.t1"; gene_id "g296"; C.avellana_Jefferson_00013 AUGUSTUS exon 29403 29621 . - . transcript_id "g296.t1"; gene_id "g296"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 29572 29574 . - 0 transcript_id "g296.t1"; gene_id "g296"; C.avellana_Jefferson_00013 AUGUSTUS tss 29621 29621 . - . transcript_id "g296.t1"; gene_id "g296"; # protein sequence = [MAAESPPLASQPPKRKHWRKRTAQDSELERFESLPWSSSLPDDDSFSMVVGTNELEGGFLSLEEIDEAKYSLEIPQLE # VGNRKEKKAKQSTKSKKRKCSDADGNSGDAKVEERMEKAKVEEKMQKDENVKTXXXXXXXXXXXXXXXXQKENESQRNEELPAGQFLA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g296 ### # start gene g297 C.avellana_Jefferson_00013 AUGUSTUS gene 33406 37699 0.06 + . g297 C.avellana_Jefferson_00013 AUGUSTUS transcript 33406 37699 0.06 + . g297.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 33406 33406 . + . transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS exon 33406 33799 . + . transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 33532 33534 . + 0 transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS intron 33800 34172 0.95 + . transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS intron 34216 35197 0.69 + . transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS intron 35259 36216 0.72 + . transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS intron 36352 37353 0.67 + . transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS CDS 33532 33799 0.8 + 0 transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS CDS 34173 34215 0.79 + 2 transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS exon 34173 34215 . + . transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS CDS 35198 35258 0.69 + 1 transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS exon 35198 35258 . + . transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS CDS 36217 36351 0.88 + 0 transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS exon 36217 36351 . + . transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS CDS 37354 37518 0.74 + 0 transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS exon 37354 37699 . + . transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 37516 37518 . + 0 transcript_id "g297.t1"; gene_id "g297"; C.avellana_Jefferson_00013 AUGUSTUS tts 37699 37699 . + . transcript_id "g297.t1"; gene_id "g297"; # protein sequence = [MANLTTPRARLRGVVFDMDGTLTVPAIDFAAMYKAVLGDDEFRRIKAENPSGIDILHHIENWSPDKQLKAYETIADYE # RQGLDRLQIMPGAAELCGFLDSKKIRRGLITRNVKASVDLFHQRFGMTFQPALSREFRPYKPDPAPLLHICSAWEVLPNEVMMVGDSLKDDVVCGKRA # GAFTCLLDETGRYDSPDYAAVNLKPDFKVSSLAEVHTLLEEHFDLAP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g297 ### # start gene g298 C.avellana_Jefferson_00013 AUGUSTUS gene 38846 40531 0.13 + . g298 C.avellana_Jefferson_00013 AUGUSTUS transcript 38846 40531 0.13 + . g298.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 38846 38846 . + . transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS exon 38846 39612 . + . transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 39196 39198 . + 0 transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS intron 39613 39729 0.83 + . transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS intron 39844 40142 0.97 + . transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS CDS 39196 39612 0.5 + 0 transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS CDS 39730 39843 0.87 + 0 transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS exon 39730 39843 . + . transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS CDS 40143 40283 1 + 0 transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS exon 40143 40531 . + . transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 40281 40283 . + 0 transcript_id "g298.t1"; gene_id "g298"; C.avellana_Jefferson_00013 AUGUSTUS tts 40531 40531 . + . transcript_id "g298.t1"; gene_id "g298"; # protein sequence = [MWTGSRKRQRNDERKKKWVGGQDGQFQSSKSMVKVYXXXXVSGPPTANAFVSPPMVPFADASGFQVQNPNPNAPQSPE # QARTGVIPVTPQSNTGLPPLPPSLRRSVSDPNPSPAKAISPSSSSGDVNAGLTKKETPDSKKRLRRMKACMREISKWCNEVSREPNEEVAEEANNAAK # KVESVAEIEESVFVEKVGEALTVNFKCPCGKGYQILLAGSDCFYKLM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g298 ### # start gene g299 C.avellana_Jefferson_00013 AUGUSTUS gene 43926 46724 0.15 + . g299 C.avellana_Jefferson_00013 AUGUSTUS transcript 43926 46724 0.15 + . g299.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 43926 43926 . + . transcript_id "g299.t1"; gene_id "g299"; C.avellana_Jefferson_00013 AUGUSTUS exon 43926 44427 . + . transcript_id "g299.t1"; gene_id "g299"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 43977 43979 . + 0 transcript_id "g299.t1"; gene_id "g299"; C.avellana_Jefferson_00013 AUGUSTUS intron 44428 45105 0.88 + . transcript_id "g299.t1"; gene_id "g299"; C.avellana_Jefferson_00013 AUGUSTUS CDS 43977 44427 0.59 + 0 transcript_id "g299.t1"; gene_id "g299"; C.avellana_Jefferson_00013 AUGUSTUS CDS 45106 46259 0.87 + 2 transcript_id "g299.t1"; gene_id "g299"; C.avellana_Jefferson_00013 AUGUSTUS exon 45106 46724 . + . transcript_id "g299.t1"; gene_id "g299"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 46257 46259 . + 0 transcript_id "g299.t1"; gene_id "g299"; C.avellana_Jefferson_00013 AUGUSTUS tts 46724 46724 . + . transcript_id "g299.t1"; gene_id "g299"; # protein sequence = [MPKFYIFPPKLSLSNSKPILCFRHQNSNIINEPPQPRTRFRNPITVNPGQLYQKKIKKQRAYEERRGVSPAGTRQMLL # LCGLGYWVQGFRCFPWLALSFHMAHNLNLSPSTLQLVQNFGNLPMVAKPLYGLFSDALYVGGARRIPFVSIGVLLQILSWGPLALIPLAGESLPTLMA # CVLLSNLGASITEVAKDALVAEYGQKHRIKGLQSYSFMALAAGGILGNLIGGYFLLKAPSRTMFLVFAVLLSHQLAISVTTREESLGLTQLSNNSLAR # NSISESIRKQFSDLVTAISEESICRPLAWIVASIAVVPILSGSIFCYQTQCLHLDASVIGMSRVISQLVLLSMAVLYDRYWKKVPMRKLIGAVQILYA # FSLLLDLALVKQINLKLGIPNEVFALCFSGLAETLAQFKLLPFAVLLVSLCPRGCEGSLTSFLASALCLSSIISGFLGIGLASILGITSGDYSRLPVG # ILIQFLAALFPLGWICCIPMSQAVADEERKRGASKRTRRSRRVGRVGFSSVYAYRRERESEPQS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g299 ### # start gene g300 C.avellana_Jefferson_00013 AUGUSTUS gene 48277 50401 0.04 - . g300 C.avellana_Jefferson_00013 AUGUSTUS transcript 48277 50401 0.04 - . g300.t1 C.avellana_Jefferson_00013 AUGUSTUS tts 48277 48277 . - . transcript_id "g300.t1"; gene_id "g300"; C.avellana_Jefferson_00013 AUGUSTUS exon 48277 50401 . - . transcript_id "g300.t1"; gene_id "g300"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 48461 48463 . - 0 transcript_id "g300.t1"; gene_id "g300"; C.avellana_Jefferson_00013 AUGUSTUS CDS 48461 50371 0.71 - 0 transcript_id "g300.t1"; gene_id "g300"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 50369 50371 . - 0 transcript_id "g300.t1"; gene_id "g300"; C.avellana_Jefferson_00013 AUGUSTUS tss 50401 50401 . - . transcript_id "g300.t1"; gene_id "g300"; # protein sequence = [MLTGMTIFSAQTARKTFALVTSRYYASATVLYTPLHPLHSLQFAIDHQSLSLGLECHAQILTHGLGQNPFLATKLISV # YATCGSPARSRLVFDSVELKSVYLWNSLINGYVKNRVYNEAFDSFNEMYCSHEMPDDYTLATLAKASGEIGDSVAGKLIHGKSLRIGFVLDTVVANSL # MSMYCKCGEFSESRKLFDEMAKRNSSSWNVIIAGYATSRGCSFDKELWQVVKYMQNDGVKPDGFTVSSLLSLFSGDSGRWDYGRELHCYIVKNGLDLG # LGSDVHLGCCLIDMYSRSNKVIVGRRVFDRMRCRNVYAWTAMINGYVQDGASDKALILFHEMQVKDGVEPNRVSLVSILPACSSHGGLIGGKQIHGFA # IRKELNHDASLCNALIDMYSKCGSLDCARRVFEDDSFCKDAISWSSIISGYGLHGRGKEAIFLYEKMLQLGIKPDMITIVVVLSACGRSGLVTEGLNI # YSSVINVYGIKPTVEICACVVDLFGRSGQLNQALDFIKSMPVEPGPSVWGALVNASIMHGNSEMQDLAYRFLIQLEPKNPSNFISLSNLYASSRRWDV # VAEVRTMMRERGLRKAPGCSWISINSKTHCFYVADKVHPCSNSIYEMLDYLIPIMKGAGYSPDIEYMV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g300 ### # start gene g301 C.avellana_Jefferson_00013 AUGUSTUS gene 58476 60926 0.11 + . g301 C.avellana_Jefferson_00013 AUGUSTUS transcript 58476 60926 0.11 + . g301.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 58476 58476 . + . transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS exon 58476 58753 . + . transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 58564 58566 . + 0 transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS intron 58754 59769 0.55 + . transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS intron 59951 60030 0.43 + . transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS intron 60173 60433 1 + . transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS intron 60504 60602 1 + . transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS CDS 58564 58753 0.55 + 0 transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS CDS 59770 59950 0.43 + 2 transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS exon 59770 59950 . + . transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS CDS 60031 60172 1 + 1 transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS exon 60031 60172 . + . transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS CDS 60434 60503 1 + 0 transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS exon 60434 60503 . + . transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS CDS 60603 60772 1 + 2 transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS exon 60603 60926 . + . transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 60770 60772 . + 0 transcript_id "g301.t1"; gene_id "g301"; C.avellana_Jefferson_00013 AUGUSTUS tts 60926 60926 . + . transcript_id "g301.t1"; gene_id "g301"; # protein sequence = [MADHEDEHETLVEKILEKIHDHDDSSSSSSSDSDDGKSKSFDSAKSKIFRLFGREKPLHKVLGAADVFLWRNKKISAG # ALGGATALWVLFELLGYHLVTLVCHILIVSLAILFLWSNACTFINKSPPRIPELRLPENCVLEVVSTVRIEINFALAVLRDIASGRDLKEFLGVIAGL # WVLSLVGKWFNFLTLFYIAFVLLHTLPVLYEKYEDHVDSFAEKATVEIKKQYVVFDAKVLSKIPRGPLKDNKKD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g301 ### # start gene g302 C.avellana_Jefferson_00013 AUGUSTUS gene 66212 74991 0.02 - . g302 C.avellana_Jefferson_00013 AUGUSTUS transcript 66212 74991 0.02 - . g302.t1 C.avellana_Jefferson_00013 AUGUSTUS tts 66212 66212 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 66212 66591 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 66478 66480 . - 0 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 66592 67365 1 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 67504 67593 1 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 67663 67739 1 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 67876 68274 0.9 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 68844 69681 1 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 69820 69929 1 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 70018 70104 1 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 70602 70891 0.88 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 70957 72210 0.47 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 72312 72470 0.82 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 72514 72720 0.47 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 72815 73188 0.3 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 73278 73376 0.94 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS intron 73499 74733 0.86 - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 66478 66591 0.92 - 0 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 67366 67503 1 - 0 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 67366 67503 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 67594 67662 1 - 0 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 67594 67662 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 67740 67875 0.94 - 1 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 67740 67875 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 68275 68843 0.96 - 0 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 68275 68843 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 69682 69819 1 - 0 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 69682 69819 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 69930 70017 1 - 1 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 69930 70017 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 70105 70601 0.91 - 0 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 70105 70601 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 70892 70956 0.94 - 2 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 70892 70956 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 72211 72311 0.47 - 1 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 72211 72311 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 72471 72513 0.87 - 2 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 72471 72513 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 72721 72814 0.47 - 0 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 72721 72814 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 73189 73277 0.96 - 2 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 73189 73277 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 73377 73498 0.92 - 1 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 73377 73498 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS CDS 74734 74951 0.93 - 0 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS exon 74734 74991 . - . transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 74949 74951 . - 0 transcript_id "g302.t1"; gene_id "g302"; C.avellana_Jefferson_00013 AUGUSTUS tss 74991 74991 . - . transcript_id "g302.t1"; gene_id "g302"; # protein sequence = [MEQKHILLSALSVGVGLGVGLGLSSGQTVSKWVGGNWSFDEISAEQIEQELMRQVVDGKDSKVTFDEFPYYLSERTRV # LLTSAAYVHLKHTDFSKHTRNLSPASRAILLSGPAELYQQMLAKALAHHFESKLLLLDVGDFSLKSFKRSISEITLGRMSSLFGSFSILPPSGETRGT # LHRQNSAMDVKSRAIEGSSNPSKLRRNASAMSDMSSISSQCASTNSAPLKRSSSWCFDEKLFLQSLYKVLVSISETGSIILYLRDVGQLLLQSQRLYN # LFNKLLKKLSGSVLILGSQMLDPEDGCREVDERLTLLFPYNIEITPPEDETHLVSWKAQLEEDMKMIQFQDNKNHISEVLAANDLECDDLGSICHADT # MVLGNYIEEIVISAISYHLMNNKDPEYRNGKLVISSKSLSHGVSVFQEGKSGGKETLKMETNGESSKETEVEEAVGAKTESKSETSASENKNETDKSV # LAMKKDGENAPPPKTEVPPDNEFEKRIRPEVIPASEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAN # EAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERILVLAATNRPFDLDE # AIIRRFERRVMVGLPSIESREKILRTLLGKEKVENLDFKELATITEGYSGSDLKNLCVTAAYRPVRELIQQERLKDAEKKPKDAEGNNSSEATSSETK # EEDKEDRVITLRPLNMEDMRQAKAQVAASFAAEGSIMGELKQWNEMYGEGGSRKKQQLTYFL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/15 # CDS introns: 0/14 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g302 ### # start gene g303 C.avellana_Jefferson_00013 AUGUSTUS gene 87466 90278 0.19 + . g303 C.avellana_Jefferson_00013 AUGUSTUS transcript 87466 90278 0.19 + . g303.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 87466 87466 . + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS exon 87466 87610 . + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS exon 87889 88073 . + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 87906 87908 . + 0 transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS intron 88074 88229 0.97 + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS intron 88701 88783 1 + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS intron 89555 89629 1 + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS intron 89662 89752 1 + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS CDS 87906 88073 1 + 0 transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS CDS 88230 88700 0.97 + 0 transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS exon 88230 88700 . + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS CDS 88784 89554 0.99 + 0 transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS exon 88784 89554 . + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS CDS 89630 89661 1 + 0 transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS exon 89630 89661 . + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS CDS 89753 90113 1 + 1 transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS exon 89753 90278 . + . transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 90111 90113 . + 0 transcript_id "g303.t1"; gene_id "g303"; C.avellana_Jefferson_00013 AUGUSTUS tts 90278 90278 . + . transcript_id "g303.t1"; gene_id "g303"; # protein sequence = [MENGTHLGSAWQDSPEVPSLIKHISSNDVAGFDDMTSLTKDQCQTSESESHSPSNDGDETEPIYHRQRVHSVSISMPQ # SPVAVHLQNTRRVLFSSDTIFEDGIPDASVVSGAACGEPPKHHSQPIRTAAAYNEAIGGGQFSYHQSIRRLKDKRYDSFKTWSGRLERQITLLRGKSP # PESKTEDEKVPNREVEKNLPVHRYFDALEGPELDTLKASEEMVLPDDKTWPFLLRYPISSFGICLGVSSQSIMWKALATSAPAKFLHISLRVNLVLWC # ISIALIATVASIYLLKMVIYFEAVRREYYHPIRINFFFAPWISLLFLALGLPPSVANNLPPALWYVLMTPIFCLELKIYGQWMSGGQRRLSKVANPSN # HLSVVGNFVGALLGASMGLKEGPIFFFSVGLAHYMVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKIQGTFDYGSRIAYFIALFLYFSL # AVRLNFFRGFKFSLAWWAYTFPMTGAAIATIRYSNEVRNVITQAMSVILSAAATLTVTGLLITTILHAFVLRDLFPNDMAIAVSDQKPIPQKKWFHLR # HGSSDSKDIEQYLKFAGSDGKDLEASLKHQNY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g303 ### # start gene g304 C.avellana_Jefferson_00013 AUGUSTUS gene 94692 96141 0.12 - . g304 C.avellana_Jefferson_00013 AUGUSTUS transcript 94692 96141 0.12 - . g304.t1 C.avellana_Jefferson_00013 AUGUSTUS tts 94692 94692 . - . transcript_id "g304.t1"; gene_id "g304"; C.avellana_Jefferson_00013 AUGUSTUS exon 94692 96141 . - . transcript_id "g304.t1"; gene_id "g304"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 95318 95320 . - 0 transcript_id "g304.t1"; gene_id "g304"; C.avellana_Jefferson_00013 AUGUSTUS CDS 95318 96079 0.63 - 0 transcript_id "g304.t1"; gene_id "g304"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 96077 96079 . - 0 transcript_id "g304.t1"; gene_id "g304"; C.avellana_Jefferson_00013 AUGUSTUS tss 96141 96141 . - . transcript_id "g304.t1"; gene_id "g304"; # protein sequence = [MEASHPLSIESFSYSWLVNLKPSLESLENSCRASLDASDEASFIEMDPRMTPSKRFFRNSQDFKFDFPAAAAQSPLTL # VHADELFSNGYVMPLFVDPLQMDMEACYDEASDSSNPTMPSSSSHAPKVLVPDDNINLYCSSSRRCRRLSKHIFQKYLDFLRPLLRRLRGNRSTSKAA # SVDKRVHKVVKNWMYSSQASPRISVAYSVDDWRKSCDSESSIYEAVLHCKRSIGICLSYYEGYCCSANIFGCQLTSS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g304 ### # start gene g305 C.avellana_Jefferson_00013 AUGUSTUS gene 99547 104011 0.02 - . g305 C.avellana_Jefferson_00013 AUGUSTUS transcript 99547 104011 0.02 - . g305.t1 C.avellana_Jefferson_00013 AUGUSTUS tts 99547 99547 . - . transcript_id "g305.t1"; gene_id "g305"; C.avellana_Jefferson_00013 AUGUSTUS exon 99547 100408 . - . transcript_id "g305.t1"; gene_id "g305"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 99740 99742 . - 0 transcript_id "g305.t1"; gene_id "g305"; C.avellana_Jefferson_00013 AUGUSTUS CDS 99740 100405 0.88 - 0 transcript_id "g305.t1"; gene_id "g305"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 100403 100405 . - 0 transcript_id "g305.t1"; gene_id "g305"; C.avellana_Jefferson_00013 AUGUSTUS exon 103761 104011 . - . transcript_id "g305.t1"; gene_id "g305"; C.avellana_Jefferson_00013 AUGUSTUS tss 104011 104011 . - . transcript_id "g305.t1"; gene_id "g305"; # protein sequence = [MLLWIASFWFVGSWIVPFLAHTSGFRKESLTYRGQALYSLLTDVAEGLAGIAILHRCLRRFHPLPSGWFKFSLEGKWQ # FHVGLGCLMFPVVNRLSQVNLNLFPILPSTPVTVSSVEQSIVSRDPVAMALYAVVVSVCAPIWEEIVFRGFLLPSLTKYMPVWCSILVSSVVFALAHF # NMQRMLPLVFLGVVMGAVFARSRNLLPSMLLHSLWNAFVFLDLMK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g305 ### # start gene g306 C.avellana_Jefferson_00013 AUGUSTUS gene 105956 110495 0.17 + . g306 C.avellana_Jefferson_00013 AUGUSTUS transcript 105956 110495 0.17 + . g306.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 105956 105956 . + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS exon 105956 106240 . + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 105996 105998 . + 0 transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS intron 106241 107408 1 + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS intron 107964 108034 0.92 + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS intron 108841 108919 1 + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS intron 109101 109481 1 + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS intron 109936 110024 1 + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS CDS 105996 106240 0.99 + 0 transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS CDS 107409 107963 0.96 + 1 transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS exon 107409 107963 . + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS CDS 108035 108840 0.96 + 1 transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS exon 108035 108840 . + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS CDS 108920 109100 1 + 2 transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS exon 108920 109100 . + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS CDS 109482 109935 1 + 1 transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS exon 109482 109935 . + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS CDS 110025 110366 1 + 0 transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS exon 110025 110495 . + . transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 110364 110366 . + 0 transcript_id "g306.t1"; gene_id "g306"; C.avellana_Jefferson_00013 AUGUSTUS tts 110495 110495 . + . transcript_id "g306.t1"; gene_id "g306"; # protein sequence = [MATATSCWILFYLVVASFGEYCMASQIGLGSKLLAREDRAWMSDNGTFAFGFTPEDGRDDQFQIAVWFAELPGDRITV # WTARDSRPVTNNAILELDTTGNLVLIDGDTTVWMSNTSGASVQYAVMSETGNFILYDIEKYTAWQSFSHPSDTLLPNQPLTVSLELTTSKSASHGGYY # SLKMLQQPTSLSLALTYNLPESYVNLPESYANYSYWQGPDISNVTGDVVAVLDEAGSFGIVYGESLDGAVYVYKNDGDEKGLSAASNRSTRLAVLRRL # TLETNGNIRLYRWDDDINGSRQWVPEWAAVSNPCDIAGICGNGICNLDRSKTNASCTCLPGTFKVEGGSQCSENSSLIGKCDSRNENSTSTLFRMSMA # QQTNYYYSDFSVIANYSDVATVSKCGDACLSDCECVASVYGLDAEKPYCWVLKSLDFGGFEDAGSTLFVKVRSNGSNTPESNSGGSSEGSGSSTREKV # LVIPIVLSMTFLIGLLCLLLYYNVHRKRALKRAMESSLILEGAPLNFGYRDLQIRTWNFSQLLGTGGFGSVYKGSLADGTLIAVKKLERVLPHGEKEF # ITEVNTIGSMHHMNLVRLCGYCSEGPQRLLVYEFMKNGSLDKWIFPSYNSRDRLLDWSTRIHIAVATAQGIAYFHEQCRNRIIHCDIKPENILLDENF # CPKVSDFGLAKLMGREHSQVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGWAFTEITNGTPIKVADRRLEG # AVEEEELIRALKVALWCIQDEVFMRPSMGEVVKMLEGSIDINMPPMPQTVLELVEEGLDHVYRAMKREFNHYSSFTVNTNPSTSHATCSYSTMSPR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g306 ### # start gene g307 C.avellana_Jefferson_00013 AUGUSTUS gene 113276 116280 0.95 + . g307 C.avellana_Jefferson_00013 AUGUSTUS transcript 113276 116280 0.95 + . g307.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 113276 113276 . + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS exon 113276 113443 . + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 113358 113360 . + 0 transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS intron 113444 113532 1 + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS intron 113738 114514 1 + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS intron 114716 114792 0.99 + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS intron 114858 115088 0.98 + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS intron 115343 115433 1 + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS intron 115487 115589 1 + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS CDS 113358 113443 1 + 0 transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS CDS 113533 113737 1 + 1 transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS exon 113533 113737 . + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS CDS 114515 114715 0.99 + 0 transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS exon 114515 114715 . + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS CDS 114793 114857 0.98 + 0 transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS exon 114793 114857 . + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS CDS 115089 115342 0.99 + 1 transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS exon 115089 115342 . + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS CDS 115434 115486 1 + 2 transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS exon 115434 115486 . + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS CDS 115590 116084 1 + 0 transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS exon 115590 116280 . + . transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 116082 116084 . + 0 transcript_id "g307.t1"; gene_id "g307"; C.avellana_Jefferson_00013 AUGUSTUS tts 116280 116280 . + . transcript_id "g307.t1"; gene_id "g307"; # protein sequence = [MALPKPASESDLSVLSTSASRYVRDSLPRYKMPDNSIPKEAAYQIIHDELLLDFKPKLNLASFVTTLMEPESDKLIME # SINKNYVDMDEYPVTTELHNRCVNMIAHLFNAPLGDSEDAIGVGTVGSSEAIMLAGLAFKRKWQNKRKAQGKPYANPNIVTGANVQVCWEKFARYFEV # ELKEVKVREGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVRSINVSGHKYGLVYAGIGWIIWRTKQDLPEELIFRIKYLGAEQSTFTLNFSKGSSQ # IIAQYYNLIRLGQEGYRNIMENCHENAMVLKEGLERTGRFNILSKDHGVPVVAFSLKKKNGGHDEFEVSEMLRRFGWIVPAYPMPADAEHITVLRVVI # RAEFSRTLAERLVQDITNVLHDLDKLPPKLIVGEEEKQENGGGALVKRKSDLETQRDITTYWKNYVVAQKAIKRQKVAAS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g307 ### # start gene g308 C.avellana_Jefferson_00013 AUGUSTUS gene 116856 117627 0.06 + . g308 C.avellana_Jefferson_00013 AUGUSTUS transcript 116856 117627 0.06 + . g308.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 116856 116856 . + . transcript_id "g308.t1"; gene_id "g308"; C.avellana_Jefferson_00013 AUGUSTUS exon 116856 117627 . + . transcript_id "g308.t1"; gene_id "g308"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 117243 117245 . + 0 transcript_id "g308.t1"; gene_id "g308"; C.avellana_Jefferson_00013 AUGUSTUS CDS 117243 117476 0.26 + 0 transcript_id "g308.t1"; gene_id "g308"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 117474 117476 . + 0 transcript_id "g308.t1"; gene_id "g308"; C.avellana_Jefferson_00013 AUGUSTUS tts 117627 117627 . + . transcript_id "g308.t1"; gene_id "g308"; # protein sequence = [MSSTNAFVRGWEIHVGLPGSPVLRQEVRQPSHLPRVVPLVVGIFRVAAGGRRRRFVREISAMGLRDCGREPLKLVCN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g308 ### # start gene g309 C.avellana_Jefferson_00013 AUGUSTUS gene 125606 126504 0.12 + . g309 C.avellana_Jefferson_00013 AUGUSTUS transcript 125606 126504 0.12 + . g309.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 125606 125606 . + . transcript_id "g309.t1"; gene_id "g309"; C.avellana_Jefferson_00013 AUGUSTUS exon 125606 125971 . + . transcript_id "g309.t1"; gene_id "g309"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 125623 125625 . + 0 transcript_id "g309.t1"; gene_id "g309"; C.avellana_Jefferson_00013 AUGUSTUS intron 125972 126280 0.57 + . transcript_id "g309.t1"; gene_id "g309"; C.avellana_Jefferson_00013 AUGUSTUS CDS 125623 125971 0.83 + 0 transcript_id "g309.t1"; gene_id "g309"; C.avellana_Jefferson_00013 AUGUSTUS CDS 126281 126381 0.57 + 2 transcript_id "g309.t1"; gene_id "g309"; C.avellana_Jefferson_00013 AUGUSTUS exon 126281 126504 . + . transcript_id "g309.t1"; gene_id "g309"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 126379 126381 . + 0 transcript_id "g309.t1"; gene_id "g309"; C.avellana_Jefferson_00013 AUGUSTUS tts 126504 126504 . + . transcript_id "g309.t1"; gene_id "g309"; # protein sequence = [MANNTTKVCLVAALVLMLASAAFIPEVDGAGECGKTPIGSAAASLSPCLSAARNGNAKVPATCCTKVSALIKTAPKCL # CAVLLSPLAKQAGIKPAIAITIPKRCSIRNRPAGKKCGNSARVVCSTLAPALALSPAXXXXXXXXXKCECI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g309 ### # start gene g310 C.avellana_Jefferson_00013 AUGUSTUS gene 138046 139583 0.23 + . g310 C.avellana_Jefferson_00013 AUGUSTUS transcript 138046 139583 0.23 + . g310.t1 C.avellana_Jefferson_00013 AUGUSTUS tss 138046 138046 . + . transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS exon 138046 138196 . + . transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 138085 138087 . + 0 transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS intron 138197 138306 1 + . transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS intron 138474 138574 0.99 + . transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS intron 138660 138777 0.99 + . transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS intron 138946 139037 1 + . transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS CDS 138085 138196 1 + 0 transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS CDS 138307 138473 0.99 + 2 transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS exon 138307 138473 . + . transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS CDS 138575 138659 0.99 + 0 transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS exon 138575 138659 . + . transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS CDS 138778 138945 1 + 2 transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS exon 138778 138945 . + . transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS CDS 139038 139330 1 + 2 transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS exon 139038 139583 . + . transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 139328 139330 . + 0 transcript_id "g310.t1"; gene_id "g310"; C.avellana_Jefferson_00013 AUGUSTUS tts 139583 139583 . + . transcript_id "g310.t1"; gene_id "g310"; # protein sequence = [MGELHSLAYTSSSLGWDFHGHNHNHNLGVPNADTMSLVMDGGELEAPFYSSLDSDFSTGYLEDALLEFSERTKRRRLL # LYTDHETDSSKDLEKSFWNSNCPWGMSESIYSVSQLNSFNQLSDEARGTSISRISEEAANIKTPEEAPETTDSSSSSYRDLANTKSINNNETLFSIAP # SGDQSWSCDKKSKKVITGVVYPFAVVKPGGVEGDITLNDINERILMPPTRPVRHPVGDFACRPCVSPDGPGLSGKAVVALTRIQTQGRGTITIIRTKG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g310 ### # start gene g311 C.avellana_Jefferson_00013 AUGUSTUS gene 143517 145561 0.12 - . g311 C.avellana_Jefferson_00013 AUGUSTUS transcript 143517 145561 0.12 - . g311.t1 C.avellana_Jefferson_00013 AUGUSTUS tts 143517 143517 . - . transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS exon 143517 143827 . - . transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 143781 143783 . - 0 transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS intron 143828 144284 1 - . transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS intron 144489 144704 0.97 - . transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS intron 144829 145144 0.76 - . transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS intron 145238 145325 0.86 - . transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS CDS 143781 143827 1 - 2 transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS CDS 144285 144488 0.97 - 2 transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS exon 144285 144488 . - . transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS CDS 144705 144828 0.97 - 0 transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS exon 144705 144828 . - . transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS CDS 145145 145237 0.75 - 0 transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS exon 145145 145237 . - . transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS CDS 145326 145529 0.73 - 0 transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS exon 145326 145561 . - . transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 145527 145529 . - 0 transcript_id "g311.t1"; gene_id "g311"; C.avellana_Jefferson_00013 AUGUSTUS tss 145561 145561 . - . transcript_id "g311.t1"; gene_id "g311"; # protein sequence = [MMAVKWNAFKDMGTKLNSWRHKLKQDLNIQTGHSPKIVRVKVKAEKLKEYDRMDLEILLEKWCDKKNQEYDANMKQLR # SLNNAPHCTGSKSFVKVTHEEERMEELISTDSAASSSRTDGTVRWALNDVYAQTPGNKPEYAGEAQMAAQLAEKNAQIVAKDAMVEERFRQLEAMFQS # RFTFEVTRHNTIVPDIESPARLVVRSSVESASAGAEKSLSRDDIELD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g311 ### # start gene g312 C.avellana_Jefferson_00013 AUGUSTUS gene 145951 148061 0.09 - . g312 C.avellana_Jefferson_00013 AUGUSTUS transcript 145951 148061 0.09 - . g312.t1 C.avellana_Jefferson_00013 AUGUSTUS tts 145951 145951 . - . transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS exon 145951 146292 . - . transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS stop_codon 146162 146164 . - 0 transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS intron 146293 146389 0.87 - . transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS intron 146451 146530 0.48 - . transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS intron 146811 147628 0.9 - . transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS CDS 146162 146292 0.78 - 2 transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS CDS 146390 146450 0.49 - 0 transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS exon 146390 146450 . - . transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS CDS 146531 146810 0.48 - 1 transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS exon 146531 146810 . - . transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS CDS 147629 148026 0.56 - 0 transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS exon 147629 148061 . - . transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS start_codon 148024 148026 . - 0 transcript_id "g312.t1"; gene_id "g312"; C.avellana_Jefferson_00013 AUGUSTUS tss 148061 148061 . - . transcript_id "g312.t1"; gene_id "g312"; # protein sequence = [MGDKLAIHCRGSRETTVKYNRYVVNGKLFHTLAVDVAKRTQNSGVCVPTVDGETYCGKLTKIIXXXXIHCRGSRETTV # KYNRYEVNGKLFHTLAVDVAKMTQNSGVCVPTVDGETYCGELTEIINVEYYDRTKWASRRFATYSPGLGRIGQLGIVSHGHFDRHHYNTSGVDDSETQ # PSETQHLKNNLDDGTGATQXXXXTPLDSGASASWGLFRMTILIGTTTTLQDTQPVDLDRRRLDKNQILVISANPDDGSDIFEVMTINDSHKLWGLPDG # KRMVCEYNPAWQPVR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g312 ### # # ----- prediction on sequence number 14 (length = 149789, name = C.avellana_Jefferson_00014) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 14 on both strands # start gene g313 C.avellana_Jefferson_00014 AUGUSTUS gene 1776 2348 0.06 + . g313 C.avellana_Jefferson_00014 AUGUSTUS transcript 1776 2348 0.06 + . g313.t1 C.avellana_Jefferson_00014 AUGUSTUS tss 1776 1776 . + . transcript_id "g313.t1"; gene_id "g313"; C.avellana_Jefferson_00014 AUGUSTUS exon 1776 1929 . + . transcript_id "g313.t1"; gene_id "g313"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 1833 1835 . + 0 transcript_id "g313.t1"; gene_id "g313"; C.avellana_Jefferson_00014 AUGUSTUS intron 1930 2011 0.99 + . transcript_id "g313.t1"; gene_id "g313"; C.avellana_Jefferson_00014 AUGUSTUS CDS 1833 1929 0.99 + 0 transcript_id "g313.t1"; gene_id "g313"; C.avellana_Jefferson_00014 AUGUSTUS CDS 2012 2205 0.9 + 2 transcript_id "g313.t1"; gene_id "g313"; C.avellana_Jefferson_00014 AUGUSTUS exon 2012 2348 . + . transcript_id "g313.t1"; gene_id "g313"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 2203 2205 . + 0 transcript_id "g313.t1"; gene_id "g313"; C.avellana_Jefferson_00014 AUGUSTUS tts 2348 2348 . + . transcript_id "g313.t1"; gene_id "g313"; # protein sequence = [MTVARPLELSAAEIVGLSIASLTAHQAVTQAAGGVGYHVVQVAKLENAHATATCGARNIQLFKSLGADEVLDYKTPNG # AAPKNLLCNENSWSKPNC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g313 ### # start gene g314 C.avellana_Jefferson_00014 AUGUSTUS gene 6265 8291 0.11 - . g314 C.avellana_Jefferson_00014 AUGUSTUS transcript 6265 8291 0.11 - . g314.t1 C.avellana_Jefferson_00014 AUGUSTUS tts 6265 6265 . - . transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS exon 6265 7457 . - . transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 7152 7154 . - 0 transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS intron 7458 7919 1 - . transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS intron 7984 8056 1 - . transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS CDS 7152 7457 1 - 0 transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS CDS 7920 7983 1 - 1 transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS exon 7920 7983 . - . transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS CDS 8057 8205 1 - 0 transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS exon 8057 8291 . - . transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 8203 8205 . - 0 transcript_id "g314.t1"; gene_id "g314"; C.avellana_Jefferson_00014 AUGUSTUS tss 8291 8291 . - . transcript_id "g314.t1"; gene_id "g314"; # protein sequence = [MNHCAIQQNAFAGREEMRREHVICPKPRRLGVWNATVNDHPIRSLRWHLSHQVELCDSKAGTDLLDIILTKGGGCGVE # QAPPQVASSPPFFCGSPPSRVANPLIQDARFGDEKLIPQSPLSPIPHASGSSSSSSSSARKGSCVRPSFGNKPSVRIEGFDCRDRRSCSIPALA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g314 ### # start gene g315 C.avellana_Jefferson_00014 AUGUSTUS gene 12161 16861 0.06 - . g315 C.avellana_Jefferson_00014 AUGUSTUS transcript 12161 16861 0.06 - . g315.t1 C.avellana_Jefferson_00014 AUGUSTUS tts 12161 12161 . - . transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS exon 12161 12754 . - . transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 12524 12526 . - 0 transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS intron 12755 14827 0.61 - . transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS intron 14980 16137 0.99 - . transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS CDS 12524 12754 0.81 - 0 transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS CDS 14828 14979 1 - 2 transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS exon 14828 14979 . - . transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS CDS 16138 16630 0.61 - 0 transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS exon 16138 16861 . - . transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 16628 16630 . - 0 transcript_id "g315.t1"; gene_id "g315"; C.avellana_Jefferson_00014 AUGUSTUS tss 16861 16861 . - . transcript_id "g315.t1"; gene_id "g315"; # protein sequence = [MATLLPLSTTLSPSPFKVXXXXXXXXXPSYLSFLNAYHNHHRFLVLQGNVTKLKPSPCQFQPLKLHLGKGIERRPLIV # LNAARSPVVGAESSGVRFRLDNLGPQPGSRKKAKRKGRGISAGQGNSCGFGMRGQKSRSGPGVRRGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPV # NLRDIEAAGFQAGEEVSLETLKKKGLINPSGRERRLPLKVLGDGELKVKLNIKARAFSASAKEKLEAAGCSLTVLPGRKKWVKPSVAKNIARADEYFA # KKRAAAAAAAASEPASA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g315 ### # start gene g316 C.avellana_Jefferson_00014 AUGUSTUS gene 21086 23540 0.1 + . g316 C.avellana_Jefferson_00014 AUGUSTUS transcript 21086 23540 0.1 + . g316.t1 C.avellana_Jefferson_00014 AUGUSTUS tss 21086 21086 . + . transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS exon 21086 21163 . + . transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 21108 21110 . + 0 transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS intron 21164 21862 0.95 + . transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS intron 21955 22265 0.73 + . transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS intron 22402 22485 0.9 + . transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS intron 22633 22773 1 + . transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS CDS 21108 21163 0.95 + 0 transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS CDS 21863 21954 0.93 + 1 transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS exon 21863 21954 . + . transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS CDS 22266 22401 0.74 + 2 transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS exon 22266 22401 . + . transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS CDS 22486 22632 0.91 + 1 transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS exon 22486 22632 . + . transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS CDS 22774 23269 1 + 1 transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS exon 22774 23540 . + . transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 23267 23269 . + 0 transcript_id "g316.t1"; gene_id "g316"; C.avellana_Jefferson_00014 AUGUSTUS tts 23540 23540 . + . transcript_id "g316.t1"; gene_id "g316"; # protein sequence = [MITTAASLQGKVCLHRPLRRPEGNPLDLNNLPDDFRDHGKQAFDDSSSSGYRKKKSGGKDGKDECGKVYECRFCSLKF # CKSQALGGHMNRHRQGKKTKFSEILXXXXXXXXVGWSERETETLNRARQLVFSTDSLVAQGASHLSCCQPVTPAGYHPAASNIGDPAMALRFPRFFST # GSPATQLPQPPQPYLYSSPPRPMSFPTPYPQHPINDYYVGHVLSSNQQCSHPNYGAPDSSYTCIGAPVGQGFPPGGSSRPAGAELVGSAEGGSGRDGS # LQNQEEGLNWGRSFAGTQQRMDPPAPINRFQDGF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g316 ### # start gene g317 C.avellana_Jefferson_00014 AUGUSTUS gene 32450 36901 0.06 - . g317 C.avellana_Jefferson_00014 AUGUSTUS transcript 32450 36901 0.06 - . g317.t1 C.avellana_Jefferson_00014 AUGUSTUS tts 32450 32450 . - . transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS exon 32450 33136 . - . transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 32747 32749 . - 0 transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS intron 33137 34795 0.97 - . transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS intron 34937 35042 0.76 - . transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS intron 35215 36305 0.99 - . transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS intron 36410 36508 0.92 - . transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS CDS 32747 33136 1 - 0 transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS CDS 34796 34936 0.97 - 0 transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS exon 34796 34936 . - . transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS CDS 35043 35214 0.75 - 1 transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS exon 35043 35214 . - . transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS CDS 36306 36409 0.99 - 0 transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS exon 36306 36409 . - . transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS CDS 36509 36583 0.65 - 0 transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS exon 36509 36901 . - . transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 36581 36583 . - 0 transcript_id "g317.t1"; gene_id "g317"; C.avellana_Jefferson_00014 AUGUSTUS tss 36901 36901 . - . transcript_id "g317.t1"; gene_id "g317"; # protein sequence = [MQLRHMRKEIAQFLQAGQEAIARIRVEHVIREQNIWAAYEILELFCEFVLARVPIIESQRECPSELREAIASIIFAAP # RCSDVPDLLQIKNLFTTKYGKEFVMAVSELRPDSGVNRTIIEKLSVSAPAAEVKLKVLNGIAQEYNLEWNSSNTEAEFSKKHEDLLGGSKQACAGVGL # SKAPNKQGSFKSSPSNGAQSIMPTNTKQESQHLQAPSASSNAPFLGTNEIEPSIKSYDAGPVSDAKRETRPQSSEILEKARAAIASAERATAAARAAA # ELVHVKFGSLKLEGGKSSQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g317 ### # start gene g318 C.avellana_Jefferson_00014 AUGUSTUS gene 41522 43421 0.02 - . g318 C.avellana_Jefferson_00014 AUGUSTUS transcript 41522 43421 0.02 - . g318.t1 C.avellana_Jefferson_00014 AUGUSTUS tts 41522 41522 . - . transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS exon 41522 42060 . - . transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 41891 41893 . - 0 transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS intron 42061 42184 0.99 - . transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS intron 42332 42468 0.91 - . transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS intron 42599 42766 0.83 - . transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS intron 42797 42926 0.81 - . transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS CDS 41891 42060 0.52 - 2 transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS CDS 42185 42331 0.99 - 2 transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS exon 42185 42331 . - . transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS CDS 42469 42598 0.91 - 0 transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS exon 42469 42598 . - . transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS CDS 42767 42796 0.83 - 0 transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS exon 42767 42796 . - . transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS CDS 42927 43241 0.98 - 0 transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS exon 42927 43421 . - . transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 43239 43241 . - 0 transcript_id "g318.t1"; gene_id "g318"; C.avellana_Jefferson_00014 AUGUSTUS tss 43421 43421 . - . transcript_id "g318.t1"; gene_id "g318"; # protein sequence = [MDLPLTLRFRSPELCLFPRKSISPINFPGRQHQPIILRHKTNPETGLSAPKLHLTVTAKKRSPIEGVSEELNAIASQN # LDMAPARRRVRLAFVEAQQQLDHCLFKMAPTGIITEEWYERNSKGLEIFCKSWMPQPGVRIKGALCFCHGYGDTCTFFFEGIAKQIAASGYAIYALDH # PGFGLSEGLHGYIPSFDELADNVIENYTKIKGRPELRGLRRFLFGQSMGGAVALKVHLKEPHGWDGVILVAPMCKVSPSLLPTVHGQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g318 ### # start gene g319 C.avellana_Jefferson_00014 AUGUSTUS gene 43706 46528 0.07 + . g319 C.avellana_Jefferson_00014 AUGUSTUS transcript 43706 46528 0.07 + . g319.t1 C.avellana_Jefferson_00014 AUGUSTUS tss 43706 43706 . + . transcript_id "g319.t1"; gene_id "g319"; C.avellana_Jefferson_00014 AUGUSTUS exon 43706 43993 . + . transcript_id "g319.t1"; gene_id "g319"; C.avellana_Jefferson_00014 AUGUSTUS exon 45009 46528 . + . transcript_id "g319.t1"; gene_id "g319"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 45013 45015 . + 0 transcript_id "g319.t1"; gene_id "g319"; C.avellana_Jefferson_00014 AUGUSTUS CDS 45013 46506 0.88 + 0 transcript_id "g319.t1"; gene_id "g319"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 46504 46506 . + 0 transcript_id "g319.t1"; gene_id "g319"; C.avellana_Jefferson_00014 AUGUSTUS tts 46528 46528 . + . transcript_id "g319.t1"; gene_id "g319"; # protein sequence = [MKSSDVMPNCFTFPIILKSCGKVNACVEGQEVHGVAIKGGFRANPFVGTTLIDMYAGGGAIGAAYKVFGEMVERNVVA # WTSMISGYILCRKMVSARCLFDLAPERDVVLWNTMVSGYIELGDMLAARKLFDEMPNRDVMSWNTMLNGYANNRDVEACEKLFEEMPERNIFSWNGLI # GGYARNEHFFEVMETFKRMLTEGNVRPNDATLVIVLSACARLGAIDLGKWVHLYAESNGHKGNHYVGNALIDMYAKCGIVENAVDVFKSMGTKDLITW # NTIINGLATHGRGSDALTLFCQMKNAGEIPDGITFIGILCACTHMGLVEDGFSYFQSMVDDYSIVPQIEHYGCMVDLLARAGLLDHAAEFVRKMPMEP # DAIIWAALLGSCRIYKNIELAELALERLIELEPKNPANFVMLSNIYGDLGRWKDVARLKVAMRDTGFRKLPGCSLIEVNDSVVEFYCLDERHPEREEI # YSALRGLTKLLRSSGYESDLLELGQGT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g319 ### # start gene g320 C.avellana_Jefferson_00014 AUGUSTUS gene 63036 64583 0.15 + . g320 C.avellana_Jefferson_00014 AUGUSTUS transcript 63036 64583 0.15 + . g320.t1 C.avellana_Jefferson_00014 AUGUSTUS tss 63036 63036 . + . transcript_id "g320.t1"; gene_id "g320"; C.avellana_Jefferson_00014 AUGUSTUS exon 63036 64583 . + . transcript_id "g320.t1"; gene_id "g320"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 63322 63324 . + 0 transcript_id "g320.t1"; gene_id "g320"; C.avellana_Jefferson_00014 AUGUSTUS CDS 63322 64332 0.94 + 0 transcript_id "g320.t1"; gene_id "g320"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 64330 64332 . + 0 transcript_id "g320.t1"; gene_id "g320"; C.avellana_Jefferson_00014 AUGUSTUS tts 64583 64583 . + . transcript_id "g320.t1"; gene_id "g320"; # protein sequence = [MSLPMSINPFPLSHSHKVSVLSASKPLRPRWPRMGSTTSTPIATAHRNGKKEKIVVVMGATGTGKSKLSIDLATRFGG # EIINSDKMQVYKGLDITTNKIPPNERRGVPHYLLGEVDPEDGELTPEEFRQLGESIISDITSRKKLPLIVGGSNSLVHALVVEKFDPESNVFDGSGLV # SSELRYNCCFLWVDVSFLVLSEYLSKRVDDMLDMGMFEELAEFYDPAESENTSPRTGLGKAIGVPEFERYFKRFPSPAADPVRKSAYEEAVREIKDNT # CQLAKQQIGKIIKLRGAGWDLRKMDATEALIAVMTSAEGRSEIWEKQVLEPSVKIVKAFLEE] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g320 ### # start gene g321 C.avellana_Jefferson_00014 AUGUSTUS gene 75926 77126 0.12 + . g321 C.avellana_Jefferson_00014 AUGUSTUS transcript 75926 77126 0.12 + . g321.t1 C.avellana_Jefferson_00014 AUGUSTUS tss 75926 75926 . + . transcript_id "g321.t1"; gene_id "g321"; C.avellana_Jefferson_00014 AUGUSTUS exon 75926 77126 . + . transcript_id "g321.t1"; gene_id "g321"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 76002 76004 . + 0 transcript_id "g321.t1"; gene_id "g321"; C.avellana_Jefferson_00014 AUGUSTUS CDS 76002 76691 1 + 0 transcript_id "g321.t1"; gene_id "g321"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 76689 76691 . + 0 transcript_id "g321.t1"; gene_id "g321"; C.avellana_Jefferson_00014 AUGUSTUS tts 77126 77126 . + . transcript_id "g321.t1"; gene_id "g321"; # protein sequence = [MSTAKFHVDDDENSGRDIKGPRPSPLKINKASHFIHKSSSSSSTSMSSVLSDSAAPARQQQRRPVIIYTHSPKIIHTQ # ARDFMALVQKLTGVSRPNDDEPTAQPDHHHHHQPHKSDIKSLSLEGGNDRNVKPVSHDDNDSSSALTDENCGGGGKGSSSSFLSPNLNLNQNQNQTNQ # YFADIPLFTPNSSSFYCSPRPVYRYPDSSYASPNVGNSMSPSVFEFLKGLPEY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g321 ### # start gene g322 C.avellana_Jefferson_00014 AUGUSTUS gene 79807 80781 0.03 - . g322 C.avellana_Jefferson_00014 AUGUSTUS transcript 79807 80781 0.03 - . g322.t1 C.avellana_Jefferson_00014 AUGUSTUS tts 79807 79807 . - . transcript_id "g322.t1"; gene_id "g322"; C.avellana_Jefferson_00014 AUGUSTUS exon 79807 80781 . - . transcript_id "g322.t1"; gene_id "g322"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 79828 79830 . - 0 transcript_id "g322.t1"; gene_id "g322"; C.avellana_Jefferson_00014 AUGUSTUS CDS 79828 80733 1 - 0 transcript_id "g322.t1"; gene_id "g322"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 80731 80733 . - 0 transcript_id "g322.t1"; gene_id "g322"; C.avellana_Jefferson_00014 AUGUSTUS tss 80781 80781 . - . transcript_id "g322.t1"; gene_id "g322"; # protein sequence = [MEVAVIFNRLDDFEVSLQNPSLLSRVILLSKWGALILALVASLGTIVNRFKVLIVKLRRQKSIAKEPLLKFANDDDFD # SEDETCSSSSSSFGXXXXXXXXXXXXXXXXXPEWDRCRSTDEDFRVAGGSGRYAEGEGHNRKNKFRRRFSWADFAGGGSVVKLWDHLGLGLDFDVDDD # SSESLISVYDTNKEKGICSHIGGKRLFPTVSTSSSPPMILTAARASCSGGVSLRVWDTRVRCRIPAILAEWTRRPQLGKMVGHVGFGGVEKLYVRDDT # NGDLTIGDVRNISSPLASLTGSDVDAW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g322 ### # start gene g323 C.avellana_Jefferson_00014 AUGUSTUS gene 86606 89086 0.08 + . g323 C.avellana_Jefferson_00014 AUGUSTUS transcript 86606 89086 0.08 + . g323.t1 C.avellana_Jefferson_00014 AUGUSTUS tss 86606 86606 . + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS exon 86606 86822 . + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 86670 86672 . + 0 transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS intron 86823 86916 1 + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS intron 87089 87442 1 + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS intron 87548 87679 0.94 + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS intron 87736 87826 0.96 + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS intron 87911 88301 0.29 + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS intron 88370 88589 0.8 + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS intron 88664 88757 1 + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS CDS 86670 86822 0.91 + 0 transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS CDS 86917 87088 1 + 0 transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS exon 86917 87088 . + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS CDS 87443 87547 0.96 + 2 transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS exon 87443 87547 . + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS CDS 87680 87735 0.95 + 2 transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS exon 87680 87735 . + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS CDS 87827 87910 0.89 + 0 transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS exon 87827 87910 . + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS CDS 88302 88369 0.8 + 0 transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS exon 88302 88369 . + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS CDS 88590 88663 0.98 + 1 transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS exon 88590 88663 . + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS CDS 88758 88855 1 + 2 transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS exon 88758 89086 . + . transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 88853 88855 . + 0 transcript_id "g323.t1"; gene_id "g323"; C.avellana_Jefferson_00014 AUGUSTUS tts 89086 89086 . + . transcript_id "g323.t1"; gene_id "g323"; # protein sequence = [MVAVMLMVLKGGRKMKCCRAQIVAIVSLMLLFPVINAWGNDGHYIVCKIAQSRLNKAAAEIVEELLPKSAENELESVC # SWADEIKFHYPWSRPLHYVNTPDVCNYQFERDCKDESGEQGRCVAGAVQNYTKQLLTIRSNDKSSNNLTEALLFYSHFMGDIHQPLHAGFASDKGGNT # IGVHWYTRKQNLHHTAWADQVQTWENCSYTDTTCANVYASEGIKAACDWAYKGVTEGSVLEDEYFLSRLPIVNLRLAQAGVRLAAILNHYFVK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g323 ### # start gene g324 C.avellana_Jefferson_00014 AUGUSTUS gene 89187 91411 0.04 - . g324 C.avellana_Jefferson_00014 AUGUSTUS transcript 89187 91411 0.04 - . g324.t1 C.avellana_Jefferson_00014 AUGUSTUS tts 89187 89187 . - . transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS exon 89187 89435 . - . transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 89357 89359 . - 0 transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS intron 89436 89551 0.86 - . transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS intron 89671 89873 0.86 - . transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS intron 89966 91089 0.78 - . transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS CDS 89357 89435 0.86 - 1 transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS CDS 89552 89670 0.86 - 0 transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS exon 89552 89670 . - . transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS CDS 89874 89965 0.78 - 2 transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS exon 89874 89965 . - . transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS CDS 91090 91312 0.25 - 0 transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS exon 91090 91411 . - . transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 91310 91312 . - 0 transcript_id "g324.t1"; gene_id "g324"; C.avellana_Jefferson_00014 AUGUSTUS tss 91411 91411 . - . transcript_id "g324.t1"; gene_id "g324"; # protein sequence = [MAGECAGGGAERKVMVAIDESDYSHYALTWVLANLKESITTSPLVIFMAQPPPRSSYTFSAPLGSARMYCPVSATPEL # TNSVQENHKKLTMAFLEKAKEICASCGVKAETITEVGDPSTAICDAVQKFDISLLVLGERGLGKIKRALLGSVSNYCVQNAKCPVLVVKKPK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g324 ### # start gene g325 C.avellana_Jefferson_00014 AUGUSTUS gene 96526 102280 0.12 + . g325 C.avellana_Jefferson_00014 AUGUSTUS transcript 96526 102280 0.12 + . g325.t1 C.avellana_Jefferson_00014 AUGUSTUS tss 96526 96526 . + . transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS exon 96526 97109 . + . transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 96657 96659 . + 0 transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS intron 97110 98209 0.99 + . transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS intron 98336 100545 0.98 + . transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS intron 100861 100962 1 + . transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS intron 101092 101627 0.9 + . transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS CDS 96657 97109 0.93 + 0 transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS CDS 98210 98335 0.99 + 0 transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS exon 98210 98335 . + . transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS CDS 100546 100860 1 + 0 transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS exon 100546 100860 . + . transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS CDS 100963 101091 0.99 + 0 transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS exon 100963 101091 . + . transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS CDS 101628 101993 0.91 + 0 transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS exon 101628 102280 . + . transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 101991 101993 . + 0 transcript_id "g325.t1"; gene_id "g325"; C.avellana_Jefferson_00014 AUGUSTUS tts 102280 102280 . + . transcript_id "g325.t1"; gene_id "g325"; # protein sequence = [MLVINSIIRLAEPIPTTEDDRSFFDPGCCFGSKPSSAAHKNRTCLSATASSPEISGTGCEVWTRACSEAVLGLARQPE # AVEWVRGLRRRIHANPELAFEEFETSKLIRDELDRMEVEYKYPLAKTGIRAWIGTGGPPFVAIRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVA # MLIGAAKILKTREHLLKGTVILLFQPAEEAGNGAKRMIGDGALENVEAIFAIHVSHEHPTATIGSRPGPLLAGCGFFRAIISGKRGHAGNPHHSLDPI # LAASAAVISLQGIVSREANPLDSQVVSVASFNGGNNLDMIPDTVVLGGTFRAFSNTSFYQLLQRIKEVIVEQAIVYRCSATVDFFENEYTIYPPTVND # EKMYEHVRKVAIDLVGPTNFRVVPPMMGAEDFSFYSEVVPAGFFYIGVRNETLGSIHTGHSPYFMIDEDVLPIGAAAHATIAERYLNEHP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g325 ### # start gene g326 C.avellana_Jefferson_00014 AUGUSTUS gene 102544 108711 0.06 - . g326 C.avellana_Jefferson_00014 AUGUSTUS transcript 102544 108711 0.06 - . g326.t1 C.avellana_Jefferson_00014 AUGUSTUS tts 102544 102544 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 102544 102916 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 102749 102751 . - 0 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 102917 103484 0.99 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 103563 103658 0.99 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 103741 103828 0.81 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 103901 104191 0.8 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 104314 104883 0.94 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 104940 105319 0.94 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 105390 105527 1 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 105612 105745 1 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 105815 106294 0.93 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 106369 106524 0.98 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 106637 106908 0.84 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS intron 107088 107188 0.99 - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 102749 102916 0.99 - 0 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 103485 103562 0.99 - 0 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 103485 103562 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 103659 103740 0.99 - 1 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 103659 103740 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 103829 103900 0.81 - 1 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 103829 103900 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 104192 104313 0.99 - 0 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 104192 104313 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 104884 104939 0.96 - 2 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 104884 104939 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 105320 105389 0.97 - 0 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 105320 105389 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 105528 105611 1 - 0 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 105528 105611 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 105746 105814 0.93 - 0 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 105746 105814 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 106295 106368 1 - 2 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 106295 106368 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 106525 106636 0.94 - 0 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 106525 106636 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 106909 107087 0.83 - 2 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 106909 107087 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS CDS 107189 107399 0.99 - 0 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 107189 107425 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 107397 107399 . - 0 transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS exon 108631 108711 . - . transcript_id "g326.t1"; gene_id "g326"; C.avellana_Jefferson_00014 AUGUSTUS tss 108711 108711 . - . transcript_id "g326.t1"; gene_id "g326"; # protein sequence = [MASSIVAVPCNVQAIKGLDCQNYIGLRPSRNLKFNCVRTGTTARPPRLFVVRASEKNDGPIKKMGLSDAESRRPRLFV # VRASEKNDGPVKKMGLSDEECEAAVVAGNVPEAPPVPRKPAAPVGTPVVPSLPLNRRPRRNRKSPVLRAAFQETQLSPANFVYPLFIHEGEEDTPIGA # MPGCYRLGWRHGLVEEVGKARDVGVNSVVLFPKVPDALKSSAGDEAYNDNGLVPRAIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDET # VHQLCKQAVSQARAGADVVSPSDMMDGRIGAIREALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALVETHEDESEG # ADILLVKPGLPYLDIIRLLRDNSSLPIAAYQVSGEYSMIKAGGVLKMIDEEKVMMESLMCLRRAGADIILTYFALQAAKCLCGEKR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/13 # CDS introns: 0/12 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g326 ### # start gene g327 C.avellana_Jefferson_00014 AUGUSTUS gene 116996 120200 0.19 + . g327 C.avellana_Jefferson_00014 AUGUSTUS transcript 116996 120200 0.19 + . g327.t1 C.avellana_Jefferson_00014 AUGUSTUS tss 116996 116996 . + . transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS exon 116996 117483 . + . transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 117351 117353 . + 0 transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS intron 117484 117720 0.98 + . transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS intron 117831 118750 0.94 + . transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS intron 118829 119544 0.91 + . transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS intron 119613 119715 0.96 + . transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS CDS 117351 117483 0.98 + 0 transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS CDS 117721 117830 0.98 + 2 transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS exon 117721 117830 . + . transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS CDS 118751 118828 0.91 + 0 transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS exon 118751 118828 . + . transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS CDS 119545 119612 0.96 + 0 transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS exon 119545 119612 . + . transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS CDS 119716 119953 0.93 + 1 transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS exon 119716 120200 . + . transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 119951 119953 . + 0 transcript_id "g327.t1"; gene_id "g327"; C.avellana_Jefferson_00014 AUGUSTUS tts 120200 120200 . + . transcript_id "g327.t1"; gene_id "g327"; # protein sequence = [MEVIRSGVADTQQSQIQHFHVLAVDDSLIERKILERLLRESSCKVTCVDSGDKALEYLRLLDSQETDSTASSSSTQSS # QQEGLKVNLIMTDYSMPGMSGYDLLKRVKGSSWKDIPVVVMSSENVPSRISMCLQEGAEEFLLKPLQLTDLNKLQPHLLKSLVHSNQDTDNXXXXXXX # NNNNNVVISNSKAVVSPESLPNKMKGLAVVYK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g327 ### # start gene g328 C.avellana_Jefferson_00014 AUGUSTUS gene 120936 126241 0.18 - . g328 C.avellana_Jefferson_00014 AUGUSTUS transcript 120936 126241 0.18 - . g328.t1 C.avellana_Jefferson_00014 AUGUSTUS tts 120936 120936 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS exon 120936 121775 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 121587 121589 . - 0 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS intron 121776 122172 0.98 - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS intron 122286 122694 0.99 - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS intron 122813 122902 1 - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS intron 123023 123100 1 - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS intron 123239 123906 0.99 - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS intron 124033 124131 1 - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS intron 124321 124406 1 - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS intron 124695 124803 1 - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS intron 124835 125797 0.96 - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS CDS 121587 121775 1 - 0 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS CDS 122173 122285 0.99 - 2 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS exon 122173 122285 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS CDS 122695 122812 1 - 0 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS exon 122695 122812 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS CDS 122903 123022 1 - 0 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS exon 122903 123022 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS CDS 123101 123238 1 - 0 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS exon 123101 123238 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS CDS 123907 124032 0.99 - 0 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS exon 123907 124032 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS CDS 124132 124320 1 - 0 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS exon 124132 124320 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS CDS 124407 124694 1 - 0 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS exon 124407 124694 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS CDS 124804 124834 0.99 - 1 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS exon 124804 124834 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS CDS 125798 125985 0.5 - 0 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS exon 125798 126241 . - . transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 125983 125985 . - 0 transcript_id "g328.t1"; gene_id "g328"; C.avellana_Jefferson_00014 AUGUSTUS tss 126241 126241 . - . transcript_id "g328.t1"; gene_id "g328"; # protein sequence = [MAPRVSICFAVFAVCLFASSLTRIGAEESEAESKEFVLTLDHSNFSETVSKHDFIVVEFYAPWCGHCKKLAPEYEKAA # SILSQNDPPIFLAKVDANEEANKEIATEFEVRGFPTIKIFRNGGKISSEYKGPREADGIVDYLKKQSGPASAEIKSVEDANSLIDAKKIVIVGVFPKF # SGEEFVNFTSVAETLRSDYEFGHTLDAKHIPRGESSVTGPIVRLLKPFDELFVDFQDFHVDALEKFVEESSVPTLTFFNSDPNNHPYVIKFFNNKNAK # AMLFLNLSSEVADSFTSKYREVAEQYKREGISFLIGDLEASQGAFQYFGLKEDQVPVIVIQKTDGQKYLKANLEADQIAPWIKEYKDGKVPPHKKSEP # IPEANNEPVKVVVADSLQDIVFNSGKNVLIEFYAPWCGHCKKLAPILDEVAVSYESDADVIIAKLDATANDIPSDAFDVKGYPTLYFNSASGKLLEFD # GGRSKEDIINYIEKNRDKPTPQEASKDEL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g328 ### # start gene g329 C.avellana_Jefferson_00014 AUGUSTUS gene 129104 135971 0.22 - . g329 C.avellana_Jefferson_00014 AUGUSTUS transcript 129104 135971 0.22 - . g329.t1 C.avellana_Jefferson_00014 AUGUSTUS tts 129104 129104 . - . transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS exon 129104 130115 . - . transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 129320 129322 . - 0 transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS intron 130116 130517 0.99 - . transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS intron 130796 133306 0.96 - . transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS intron 133522 134483 0.96 - . transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS CDS 129320 130115 1 - 1 transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS CDS 130518 130795 0.98 - 0 transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS exon 130518 130795 . - . transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS CDS 133307 133521 0.99 - 2 transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS exon 133307 133521 . - . transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS CDS 134484 135861 0.98 - 0 transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS exon 134484 135971 . - . transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 135859 135861 . - 0 transcript_id "g329.t1"; gene_id "g329"; C.avellana_Jefferson_00014 AUGUSTUS tss 135971 135971 . - . transcript_id "g329.t1"; gene_id "g329"; # protein sequence = [MGCGGSKVDDLPLVTLCRERKELIKAASDHRYALAAAHVSYFQSLNNIGDSLRRFIDEEFVISLPSSPVLTLPSDKGK # KTKKRPNINDSSSTTSISHSHLVSPTQEEEEKDIADSHLHLSSDSDSELNSESGHIHIHSSPEEQGQSSSYAYPPPTNWGPPPTNWGPPGVNSYAYYM # KSSGTPIQTVVQEDPERYAGANGQWSDSSYGYPGYPPGYGGFFGFPPMGSPVTDSQIDRRPSTPAPPPSPPRVSTWDFLNVFDTVDSAGYYPGFYRSN # RLGSTASSPDSKEVREREGIPELEDEMEQEVVVKEVQKEKKKLKEDVNVNKDNNSEVGEGTSRAVPLRGSGSSSTIPLSGSVSSHSNSGQGKEIKSSP # DTIVSEEGSSRKKGVSFGVDEVSPMDVRSSKPSSLTTLSGHHGKRDLQEVVMEIRDEFEVASGYGKEVALLLEVGKLPYQPRGTSFKVIFSRIRYLVA # PSRFSSHPPLRLSVKLSSRTMKMAKAYYGESGNGFNMKPGNLSSTLDKLYAWEKKLYKEVKDEERLRVSYEKKCKKLKILDDRGAESSKIDATRDSIR # KSLTKINVCIRAVDAISSRINKLRDEELQPQLTQLIHGYHTALLLDLDNGYHFSAXLIRMWKSMLKCHQKQFQAIMESKARSFKVNTGLQRDSGLKAT # LELEVELLNWCSRFNNWINTQKSYVESLNGWLLRCLHQEQEETADGPAPFSPGRIGAPPIFIICNDWYQAMVSISERRVGNALHEFALSLHQLWERQD # EEQRQRIKAAYLSKDFEKRLRTLRMETGRMELDHDGSSDRTAMSKVPSESGVSPLDDLKVDLDSISKKLYEERAKHKETVRLVHDAASNKIQAGLVPI # FQALEKFTSAALKAHEQVRLQDAGGS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g329 ### # start gene g330 C.avellana_Jefferson_00014 AUGUSTUS gene 141516 149780 0.01 + . g330 C.avellana_Jefferson_00014 AUGUSTUS transcript 141516 149780 0.01 + . g330.t1 C.avellana_Jefferson_00014 AUGUSTUS tss 141516 141516 . + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS exon 141516 143290 . + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS start_codon 141820 141822 . + 0 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS intron 143291 143488 0.56 + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS intron 143794 143857 0.53 + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS intron 145550 145991 0.55 + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS intron 146206 147369 0.44 + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS intron 147539 148414 0.23 + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS intron 148562 148659 0.46 + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS intron 149000 149176 1 + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS intron 149520 149593 0.67 + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS CDS 141820 143290 0.64 + 0 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS CDS 143489 143793 0.38 + 2 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS exon 143489 143793 . + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS CDS 143858 145549 0.39 + 0 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS exon 143858 145549 . + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS CDS 145992 146205 0.51 + 0 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS exon 145992 146205 . + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS CDS 147370 147538 0.69 + 2 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS exon 147370 147538 . + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS CDS 148415 148561 0.24 + 1 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS exon 148415 148561 . + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS CDS 148660 148999 0.76 + 1 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS exon 148660 148999 . + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS CDS 149177 149519 0.64 + 0 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS exon 149177 149519 . + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS CDS 149594 149760 0.67 + 2 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS exon 149594 149780 . + . transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS stop_codon 149758 149760 . + 0 transcript_id "g330.t1"; gene_id "g330"; C.avellana_Jefferson_00014 AUGUSTUS tts 149780 149780 . + . transcript_id "g330.t1"; gene_id "g330"; # protein sequence = [MAEDLPWVHLSLTEDEDVEVHIQQAELDGVVSRGRACVVGKLIADRLVSKETIRTTLMKWWKPFGNLAFKVLGENLFL # IDFTDSRDKERVLEGRPWVFEESLFLVEDFDGTTPASKYTFEKASFWVRMNNLPLGCMGLEMGRKIGETIGAVEAVDTDDEGIGWGEFLRVKIVLELT # KPLPRGRKINIQGEIFWITFQFERLPKFCFACGAIRHGRGGCVQKSVYRHREKLQYGPWLRAASPTRRLEKSQNLHGRHRDPSPPEKGKKTRRAWEFQ # QGENQKTAGAEPVGAEGGDGEHTRRRNPNSHSGKRGFSGGDSGLEAARKNPAISSYGMKKKEGATPNPEDYSESMRFSNQGGSDPRNPCMGKFPNKAS # ISPLNEPGLKNHSPGIGPSNGQNAVGPVSLGLGGLNGSPRIPFTGPLISEVEKTMQATQEGSYASKDHGNEMVTWKRKAQDDSEANEPRKRREVLGEQ # TKSGQASKNRKLSGKVETQNGLGNPRTVRELHRLVRQKQPFLVFLMETKLRSERMEAIRQKLEFPNMLVVDCVGKSGGLALLWGDEASVEIQNYSQRH # INGVISCSDIDVPWKFTGFYGHPESGGLALLWGDGASVEIQNYSQRHINGVISCSDIDVPWKFTGFYGHPEVSKRHEGWALLKHLAGLTPFPWVCLGD # FNEITTQSEKWGGRGRPSGQMIAFQQTLEFCELSDMGFFGPKFTWTNCRDGGDFTKVRLDRGVANAAWMTLFPSADISVEVVPCSDHTPLILGLTEEG # RRREGGRRFRYEDKWRLHEDYSEVIKNNWSSPVGERNGWEAFIQRVTRCRQGLLRWQRRQHETVHGPINSLRSKLSSLQGDDELGSGIEMQAVRRDLQ # KLLDQENLKWRQRAKIEWLRGGDRNTRYYHACANSRRKSNRINHIIDADGCQRVTTEEVQMGFVRYFSDLFNSENTADVEPCVQHMERKVSAEXXXXP # WVCLGDFNEITMQSEKWGGRGRPSGQMIAFQQTLEFCELSDMGFFGPKFTWTNCRDGGDFTKVRLDKGVANAAWMTLFPSAEISVEVVPCSDHTPLIL # GLTEEVRRREGGRRFRYEDKWRLHEDYFEVIKANWSSPVGERNGWEAFIQRVTRCRQGLLRWQRRQHETVHEPINSLRSKLLSLQGDEEIGSGIEMQA # PCVQHMERKVSAEMNNDLLKPFTAEEIQTALFQMSPLKTPGPDGFPAGFYQANWSTVGNDLCQAILGTLNSAEQQATLANAGIPATQRYDTYLGLPAL # VGKSRRVAFKGIIDRVWRKLQDWXXXXLTGIGGYRNHLHSMWSLPCVNSVRMRQCENSLMKSSMGGIWKNWREFSLRRRLDWVTGRLMLGGAFIALVE # FFRRAYYGALGMETLCASGRIGGYQKNLHSVWSFPYVNSVRMRQCENLLMKSSMGGICKNWREFXXXXKSAYHMQVDLEASKLAENSSSRGTNECPAA # MDVWGMGPVKFQKSHXXXXKVQAILSIPISSTNQPNVMIWRGTANGMFSVKSAYHMQVDMEASKLAENSSSRGTNEVWKKLWALAITNAEKNFLWQAC # HDILPTRENLLKLPCSYGCMGHGASQISEESLCRPNVPGCGGRHVQQMHRRGDGSFCGLSSTNLDEA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g330 ### # # ----- prediction on sequence number 15 (length = 146664, name = C.avellana_Jefferson_00015) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 15 on both strands # start gene g331 C.avellana_Jefferson_00015 AUGUSTUS gene 1 781 0.57 - . g331 C.avellana_Jefferson_00015 AUGUSTUS transcript 1 781 0.57 - . g331.t1 C.avellana_Jefferson_00015 AUGUSTUS tts 1 1 . - . transcript_id "g331.t1"; gene_id "g331"; C.avellana_Jefferson_00015 AUGUSTUS exon 1 60 . - . transcript_id "g331.t1"; gene_id "g331"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 32 34 . - 0 transcript_id "g331.t1"; gene_id "g331"; C.avellana_Jefferson_00015 AUGUSTUS intron 61 139 0.82 - . transcript_id "g331.t1"; gene_id "g331"; C.avellana_Jefferson_00015 AUGUSTUS CDS 32 60 0.87 - 2 transcript_id "g331.t1"; gene_id "g331"; C.avellana_Jefferson_00015 AUGUSTUS CDS 140 665 0.89 - 0 transcript_id "g331.t1"; gene_id "g331"; C.avellana_Jefferson_00015 AUGUSTUS exon 140 781 . - . transcript_id "g331.t1"; gene_id "g331"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 663 665 . - 0 transcript_id "g331.t1"; gene_id "g331"; C.avellana_Jefferson_00015 AUGUSTUS tss 781 781 . - . transcript_id "g331.t1"; gene_id "g331"; # protein sequence = [MSGIWRWSNKAKRMTQLLTSDTSSSNHHRFTQVRPISAHLNHLQVGTHRRRDSLIGVQERYKWGHGGSDSDGFKSNRI # RKIRAEANCPRCFKHMDLLFSFSNRHNFSPPVPVGAVDAVDEDGDDQSKTGGAVNLCPNCKTAYYFRPHKIVPLQGSFVEIARVNNSSRSNSNADGSG # LESRFGTL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g331 ### # start gene g332 C.avellana_Jefferson_00015 AUGUSTUS gene 2347 5541 0.32 - . g332 C.avellana_Jefferson_00015 AUGUSTUS transcript 2347 5541 0.32 - . g332.t1 C.avellana_Jefferson_00015 AUGUSTUS tts 2347 2347 . - . transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS exon 2347 2735 . - . transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 2574 2576 . - 0 transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS intron 2736 4011 0.9 - . transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS intron 4159 4391 0.97 - . transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS intron 4539 5102 0.7 - . transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS CDS 2574 2735 0.9 - 0 transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS CDS 4012 4158 0.91 - 0 transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS exon 4012 4158 . - . transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS CDS 4392 4538 0.73 - 0 transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS exon 4392 4538 . - . transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS CDS 5103 5453 0.71 - 0 transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS exon 5103 5541 . - . transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 5451 5453 . - 0 transcript_id "g332.t1"; gene_id "g332"; C.avellana_Jefferson_00015 AUGUSTUS tss 5541 5541 . - . transcript_id "g332.t1"; gene_id "g332"; # protein sequence = [MKQGEKTIHSLPRQRKTRKKEVRSFGYGXXXXXXXXXXXXXXYAVGDIPGREEGGVEDERRGRTPGALRVLERWYGIS # PGALVLNREGHHPHPIPLRRDGSPLPLPPLQVPPRSLETDGILVLSCRKVEQVAEEAESLKQSLDKYSLRTQRRMMEAKERAELLGRANGDSHVLKIF # DEEAQAMQSARSSARMLEEASLTGEAILSAMSGSRERLKKAHRKALDVLNTVGLSNSVLRLIERRHRVDNWIKYAGMILTIIIVIIIWRWKR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g332 ### # start gene g333 C.avellana_Jefferson_00015 AUGUSTUS gene 9676 11523 0.04 + . g333 C.avellana_Jefferson_00015 AUGUSTUS transcript 9676 11523 0.04 + . g333.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 9676 9676 . + . transcript_id "g333.t1"; gene_id "g333"; C.avellana_Jefferson_00015 AUGUSTUS exon 9676 11523 . + . transcript_id "g333.t1"; gene_id "g333"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 9769 9771 . + 0 transcript_id "g333.t1"; gene_id "g333"; C.avellana_Jefferson_00015 AUGUSTUS CDS 9769 11346 0.99 + 0 transcript_id "g333.t1"; gene_id "g333"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 11344 11346 . + 0 transcript_id "g333.t1"; gene_id "g333"; C.avellana_Jefferson_00015 AUGUSTUS tts 11523 11523 . + . transcript_id "g333.t1"; gene_id "g333"; # protein sequence = [MNLNEHVLAVLAKCNHLNHLKQLQAFLITLGHNQTQFYAFKLVRFCALSLANLPYARVIFDHLHSPNVYLYTAMITAY # ASRPDHESAFALYRNMVRRRRPQPNHFVYPHVLKACPQALEPHGTKMVHTQILKSGFGQYPVVETALVDSYSRFCSDNRSARQVFDEMYQKNVVSWTA # MISGYARLGEIGNAISLFEKMPDRDVPAWNAVISGCTQNGLFSEAISLFRRMVNLSQEGQHQGIRPNQVTVVCALSACGHTGMLQLGKWIHGYVYKNR # VDQDTFISNALVDMYGKCGNLKKARRVFDMTPKKSLTSWNSMINSFALHGQSESAISTFEEMMQCADGMKPDEVTFVGLLNACTHGGLVEKGLSYFEM # MTNNCRIEPKIEHYGCLIDLHGRAGQFEEALEVVRGMSIEPDEVVWGSLLNGCKIHGRSDLAEFTVRKLIEIDPNNGSYGIMLANIHGELGKWDEVRK # VRKMLKEQNAYKTPGCSWIEVDNQVYQFYSADKSHYRTEEIYKMLESMLCFVILK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g333 ### # start gene g334 C.avellana_Jefferson_00015 AUGUSTUS gene 13337 14151 0.91 - . g334 C.avellana_Jefferson_00015 AUGUSTUS transcript 13337 14151 0.91 - . g334.t1 C.avellana_Jefferson_00015 AUGUSTUS tts 13337 13337 . - . transcript_id "g334.t1"; gene_id "g334"; C.avellana_Jefferson_00015 AUGUSTUS exon 13337 14151 . - . transcript_id "g334.t1"; gene_id "g334"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 13495 13497 . - 0 transcript_id "g334.t1"; gene_id "g334"; C.avellana_Jefferson_00015 AUGUSTUS CDS 13495 14085 1 - 0 transcript_id "g334.t1"; gene_id "g334"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 14083 14085 . - 0 transcript_id "g334.t1"; gene_id "g334"; C.avellana_Jefferson_00015 AUGUSTUS tss 14151 14151 . - . transcript_id "g334.t1"; gene_id "g334"; # protein sequence = [MGAQAQEVVLALFLLLFVNVGFSNGSLLPLLERPGSMLADFWADPFRVLEQIPYGLERDDNIMALPPARVDWKETPEG # HVIMMDVPGLKKEEIKIEVDENRVVRVSGERQREEEKKGDRWHRVERSYGKFWRQFRFPENVDLDSVKAKLENGVLTLSLAKLSPDKIKGPGPRIVSI # AGEEDHEPPKLRSSEAKQEL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g334 ### # start gene g335 C.avellana_Jefferson_00015 AUGUSTUS gene 17066 19260 0.11 + . g335 C.avellana_Jefferson_00015 AUGUSTUS transcript 17066 19260 0.11 + . g335.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 17066 17066 . + . transcript_id "g335.t1"; gene_id "g335"; C.avellana_Jefferson_00015 AUGUSTUS exon 17066 17398 . + . transcript_id "g335.t1"; gene_id "g335"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 17162 17164 . + 0 transcript_id "g335.t1"; gene_id "g335"; C.avellana_Jefferson_00015 AUGUSTUS intron 17399 18693 0.99 + . transcript_id "g335.t1"; gene_id "g335"; C.avellana_Jefferson_00015 AUGUSTUS CDS 17162 17398 1 + 0 transcript_id "g335.t1"; gene_id "g335"; C.avellana_Jefferson_00015 AUGUSTUS CDS 18694 19107 1 + 0 transcript_id "g335.t1"; gene_id "g335"; C.avellana_Jefferson_00015 AUGUSTUS exon 18694 19260 . + . transcript_id "g335.t1"; gene_id "g335"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 19105 19107 . + 0 transcript_id "g335.t1"; gene_id "g335"; C.avellana_Jefferson_00015 AUGUSTUS tts 19260 19260 . + . transcript_id "g335.t1"; gene_id "g335"; # protein sequence = [MKIQCDVCEKVEAEVLCCADEAVLCRGCDHKVHAANKLSQKHERVLLLKDSSSSLSSSSTSSSTSSSSHAQLPPCDIC # KERNGYFFCIEDRALFCKHCDVSTHMGSPFASSHRRFLITGVKVALQPSINTNDIISSPTSATTSFNFPADNESRAAMAPMSVEAASTTETRATFSGA # EVDPFAIGPSNWLLNETFDPNDFNYYEFSEVGSSRISTTP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g335 ### # start gene g336 C.avellana_Jefferson_00015 AUGUSTUS gene 21055 22341 0.38 - . g336 C.avellana_Jefferson_00015 AUGUSTUS transcript 21055 22341 0.38 - . g336.t1 C.avellana_Jefferson_00015 AUGUSTUS tts 21055 21055 . - . transcript_id "g336.t1"; gene_id "g336"; C.avellana_Jefferson_00015 AUGUSTUS exon 21055 22341 . - . transcript_id "g336.t1"; gene_id "g336"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 21200 21202 . - 0 transcript_id "g336.t1"; gene_id "g336"; C.avellana_Jefferson_00015 AUGUSTUS CDS 21200 22285 1 - 0 transcript_id "g336.t1"; gene_id "g336"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 22283 22285 . - 0 transcript_id "g336.t1"; gene_id "g336"; C.avellana_Jefferson_00015 AUGUSTUS tss 22341 22341 . - . transcript_id "g336.t1"; gene_id "g336"; # protein sequence = [MGVDIQEKLRLALGSVKDHASIGKAMIYNHHDGFSHIEVAVLRATGHDNGPIDDEHMHEILFLVSNSPGSIPFLAERI # SRRLCKTRDRLVALKTLVLIHRLLRGGNRCFEQQLRGTHVSGHLQLCNPWISKNSFLSKYAAYLEERMGWLINQAGKLEPVVMSHGLDFRCYEEKSVD # MVFRKLPKCQLLIDRVLDCSPPSDIFPSDYLAQAAMMSTLKESFQLYFTFCEGIAALVNMFFDLNRAARGLACEILKRASRQTQDLHDMYEKCKRVIQ # NKNLEYPSVQIITMEHVMALEECLGCPQNQPPPILGCLSNSAKPLRRAAKQGKKNENNIFSCALETKISMVWVLFEEDDHLSCGKKC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g336 ### # start gene g337 C.avellana_Jefferson_00015 AUGUSTUS gene 27204 30331 0.08 - . g337 C.avellana_Jefferson_00015 AUGUSTUS transcript 27204 30331 0.08 - . g337.t1 C.avellana_Jefferson_00015 AUGUSTUS tts 27204 27204 . - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS exon 27204 27423 . - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 27385 27387 . - 0 transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS intron 27424 27913 0.43 - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS intron 27996 29201 0.84 - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS intron 29273 29366 1 - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS intron 29498 29613 0.72 - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS intron 29690 29914 0.98 - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS CDS 27385 27423 0.43 - 0 transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS CDS 27914 27995 0.55 - 1 transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS exon 27914 27995 . - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS CDS 29202 29272 1 - 0 transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS exon 29202 29272 . - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS CDS 29367 29497 0.73 - 2 transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS exon 29367 29497 . - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS CDS 29614 29689 0.71 - 0 transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS exon 29614 29689 . - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS CDS 29915 30259 0.92 - 0 transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS exon 29915 30331 . - . transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 30257 30259 . - 0 transcript_id "g337.t1"; gene_id "g337"; C.avellana_Jefferson_00015 AUGUSTUS tss 30331 30331 . - . transcript_id "g337.t1"; gene_id "g337"; # protein sequence = [MASQSVWKWCVGMRMSLGHSSSYYYNSSRCSSPSSPSSLFLKASRPASPLRITRRGTMRWRQGYTYTTTSNKVVENWK # GKEYLELTDQELMKQCEMDTFKASGPGGQHRNKRESAAVEDRSQHMNRASALARLRTVLALRVRNNVDLEDYSPPPELLRILPLKSTVRPSDTGPQIG # HNNPKFRFGLQALLDLIFAVEGSVSEAAKFLGLSTGALSRLILSDDSLRKTVNELRASKDIGHQETNRIGF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g337 ### # start gene g338 C.avellana_Jefferson_00015 AUGUSTUS gene 35276 38109 0.14 + . g338 C.avellana_Jefferson_00015 AUGUSTUS transcript 35276 38109 0.14 + . g338.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 35276 35276 . + . transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS exon 35276 35421 . + . transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 35342 35344 . + 0 transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS intron 35422 35498 1 + . transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS intron 35697 36302 0.99 + . transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS intron 36334 36997 0.93 + . transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS intron 37227 37327 0.52 + . transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS CDS 35342 35421 0.98 + 0 transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS CDS 35499 35696 0.99 + 1 transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS exon 35499 35696 . + . transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS CDS 36303 36333 0.93 + 1 transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS exon 36303 36333 . + . transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS CDS 36998 37226 0.97 + 0 transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS exon 36998 37226 . + . transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS CDS 37328 37983 0.52 + 2 transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS exon 37328 38109 . + . transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 37981 37983 . + 0 transcript_id "g338.t1"; gene_id "g338"; C.avellana_Jefferson_00015 AUGUSTUS tts 38109 38109 . + . transcript_id "g338.t1"; gene_id "g338"; # protein sequence = [MEVVEEMEIVIVGGGICGLATALALHRKGITSVVLEKSESLRAGGGGIAVHTNGWRALDQLGIASELRQTAHTLQLSR # IMFLDSGKQKELPVSAKGQGSNLDSIVIGCDGGNSIIGEFLELKPPKLLSACALRGFTIYPNGHGFPPDFIRQKKGQILLGRTPVNDTLVFWFVAPQG # YPQDSNVWKDPELIRQYALESTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLTHLRYREPHDVLFGR # FRKGSVTVAGDAKHIMGPFLGQGGSAGVEDAIVLARCLAPKLQEENLERNGREMMMVQKVGEGLDAYVKERRMRLVWLSTQTYLTGKLLLDASPFPMK # LLILVIVVALFRDPVGHSRYDCGRL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g338 ### # start gene g339 C.avellana_Jefferson_00015 AUGUSTUS gene 39786 40381 0.39 + . g339 C.avellana_Jefferson_00015 AUGUSTUS transcript 39786 40381 0.39 + . g339.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 39786 39786 . + . transcript_id "g339.t1"; gene_id "g339"; C.avellana_Jefferson_00015 AUGUSTUS exon 39786 39909 . + . transcript_id "g339.t1"; gene_id "g339"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 39827 39829 . + 0 transcript_id "g339.t1"; gene_id "g339"; C.avellana_Jefferson_00015 AUGUSTUS intron 39910 40009 0.98 + . transcript_id "g339.t1"; gene_id "g339"; C.avellana_Jefferson_00015 AUGUSTUS CDS 39827 39909 0.96 + 0 transcript_id "g339.t1"; gene_id "g339"; C.avellana_Jefferson_00015 AUGUSTUS CDS 40010 40181 0.98 + 1 transcript_id "g339.t1"; gene_id "g339"; C.avellana_Jefferson_00015 AUGUSTUS exon 40010 40381 . + . transcript_id "g339.t1"; gene_id "g339"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 40179 40181 . + 0 transcript_id "g339.t1"; gene_id "g339"; C.avellana_Jefferson_00015 AUGUSTUS tts 40381 40381 . + . transcript_id "g339.t1"; gene_id "g339"; # protein sequence = [MDQVEEMEEIIVVGGGICGLATALALHRKGIKSLVLEKSESLRATGAGITIRTNGWRALDRLGVGSKLRKTALHLQRY # TLSSRK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g339 ### # start gene g340 C.avellana_Jefferson_00015 AUGUSTUS gene 43476 45951 0.1 - . g340 C.avellana_Jefferson_00015 AUGUSTUS transcript 43476 45951 0.1 - . g340.t1 C.avellana_Jefferson_00015 AUGUSTUS tts 43476 43476 . - . transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS exon 43476 44167 . - . transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 44145 44147 . - 0 transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS intron 44168 44264 0.57 - . transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS intron 44329 44831 0.95 - . transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS intron 44979 45498 1 - . transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS CDS 44145 44167 0.57 - 2 transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS CDS 44265 44328 0.61 - 0 transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS exon 44265 44328 . - . transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS CDS 44832 44978 1 - 0 transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS exon 44832 44978 . - . transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS CDS 45499 45834 1 - 0 transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS exon 45499 45951 . - . transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 45832 45834 . - 0 transcript_id "g340.t1"; gene_id "g340"; C.avellana_Jefferson_00015 AUGUSTUS tss 45951 45951 . - . transcript_id "g340.t1"; gene_id "g340"; # protein sequence = [MESIEAKEAERLGHDLASLSLDSGYPHPDNDGTPNDEEYNYDWLLETSFFNNVVVVGNLPVVGAGGVEKLESWVQMNF # GKYGLIKKDGFSMPLNPRTQESLGYCFIDYNTRKEAENAQKNINGQKMDEEHTLSAYLYEAFDRVMDAPDARTPSETAPYFDRHTILITVWLQAQNSS # TMTLGMGELKCRR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g340 ### # start gene g341 C.avellana_Jefferson_00015 AUGUSTUS gene 51946 56530 0.02 + . g341 C.avellana_Jefferson_00015 AUGUSTUS transcript 51946 56530 0.02 + . g341.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 51946 51946 . + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS exon 51946 52229 . + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 51971 51973 . + 0 transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS intron 52230 53352 0.98 + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS intron 53520 53602 0.53 + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS intron 53675 53809 0.43 + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS intron 53956 54069 0.51 + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS intron 54185 54269 0.22 + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS intron 54351 56190 0.11 + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS CDS 51971 52229 1 + 0 transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS CDS 53353 53519 0.67 + 2 transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS exon 53353 53519 . + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS CDS 53603 53674 0.43 + 0 transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS exon 53603 53674 . + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS CDS 53810 53955 0.53 + 0 transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS exon 53810 53955 . + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS CDS 54070 54184 0.21 + 1 transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS exon 54070 54184 . + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS CDS 54270 54350 0.12 + 0 transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS exon 54270 54350 . + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS CDS 56191 56358 0.07 + 0 transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS exon 56191 56530 . + . transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 56356 56358 . + 0 transcript_id "g341.t1"; gene_id "g341"; C.avellana_Jefferson_00015 AUGUSTUS tts 56530 56530 . + . transcript_id "g341.t1"; gene_id "g341"; # protein sequence = [MSSIPKKRPKPNAKPPPSSSSTSSMSSLMEPPQSFFPSTNEFLRLVAVLAIATFVALGCNLLATTFNRQPKPFCDSGD # LDSHDAISDFCEPCPSNGECYQGKLECMRGYTQHGKFCVEDGDINETAKKLVCPRKTYSLWYTDSEWVEIHLCEAYAQFLCDGIGTVWVREDDVWKEL # DGHELMKNVGLDSATYMYAKQRAMDAVGRLLETRTNPRGIKELKCPDLLVERYKPFPCRIRQWLIEHALIIFPVCVLFLGCTILLLKVRRRQYLSSRA # EELYHQVCEILEENALTSNSINGEREPWVVASRLRDHLILPRERKDPVLWKKVFSCPDQRV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g341 ### # start gene g342 C.avellana_Jefferson_00015 AUGUSTUS gene 59306 70685 0.18 + . g342 C.avellana_Jefferson_00015 AUGUSTUS transcript 59306 70685 0.18 + . g342.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 59306 59306 . + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS exon 59306 59375 . + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS exon 64093 64758 . + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 64120 64122 . + 0 transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS intron 64759 65856 0.92 + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS intron 66068 67392 0.99 + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS intron 67676 68715 0.99 + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS intron 69103 69572 0.89 + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS intron 69651 70214 0.98 + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS CDS 64120 64758 1 + 0 transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS CDS 65857 66067 0.92 + 0 transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS exon 65857 66067 . + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS CDS 67393 67675 0.99 + 2 transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS exon 67393 67675 . + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS CDS 68716 69102 0.87 + 1 transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS exon 68716 69102 . + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS CDS 69573 69650 0.99 + 1 transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS exon 69573 69650 . + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS CDS 70215 70452 0.99 + 1 transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS exon 70215 70685 . + . transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 70450 70452 . + 0 transcript_id "g342.t1"; gene_id "g342"; C.avellana_Jefferson_00015 AUGUSTUS tts 70685 70685 . + . transcript_id "g342.t1"; gene_id "g342"; # protein sequence = [MGSKHNSPGNRTRPLSIFVILGLCCFFYLLGAWQKSGFGKGDSVALQLTKQTDCNIFTNLNFEAHHNVVEIIQPSAPK # ATVFKPCDVKYRDYTPCQEQDRAMKFPRENMIYRERHCPPEEEKLRCLIPAPKGYLTPFPWPKGRDYVHYANVPYKSLTVEKAVQNWVQFQGDVFKFP # GGGTMFPQGADAYIDELASVIPIADGSVRTALDTGCGVASWGAYLLKRNVLAMSFAPRDNHEAQVQFALERGVPAIIGVLGSIRLPYPSRAFDMAQCS # RCLIPWASNDGMYLKEVDRVLRPGGYWVLSGPPINWKTYYKTWKRSKEDVKAEQRKIEELAELLCWEKKYEKGDIAIWRKKVNAKSCQRKSENICESK # DADDAWYKKMDTCITPFPEVTSKDEVAGGELKKFPARLFAVPPRIAKGSIQGVTAESYQEDNKLWKKRLTVYKRINRLIGTTRYRNVMDMNAGLGGFA # AALESRKSWVINVVPTIAKDTLGVIFERGLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQNTCQLEDILLEMDRILRPEGAVILRDEVDVLNKVKKI # AGGMRWNIKLMDHEDGPLVPEKILVAVKQYWVGSSGNSTSSDE] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g342 ### # start gene g343 C.avellana_Jefferson_00015 AUGUSTUS gene 88536 95067 0.13 + . g343 C.avellana_Jefferson_00015 AUGUSTUS transcript 88536 95067 0.13 + . g343.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 88536 88536 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 88536 88797 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 88668 88670 . + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS intron 88798 89528 0.99 + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS intron 89609 89783 1 + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS intron 89851 90107 0.82 + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS intron 90155 90314 0.82 + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS intron 90393 90507 0.91 + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS intron 91066 92212 0.99 + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS intron 92354 93752 0.46 + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS intron 94026 94168 0.95 + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS intron 94238 94353 0.9 + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS intron 94435 94837 0.95 + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 88668 88797 0.8 + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 89529 89608 0.99 + 2 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 89529 89608 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 89784 89850 0.84 + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 89784 89850 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 90108 90154 0.82 + 2 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 90108 90154 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 90315 90392 0.98 + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 90315 90392 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 90508 91065 0.9 + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 90508 91065 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 92213 92353 0.46 + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 92213 92353 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 93753 94025 0.43 + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 93753 94025 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 94169 94237 0.95 + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 94169 94237 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 94354 94434 0.9 + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 94354 94434 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS CDS 94838 95008 1 + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS exon 94838 95067 . + . transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 95006 95008 . + 0 transcript_id "g343.t1"; gene_id "g343"; C.avellana_Jefferson_00015 AUGUSTUS tts 95067 95067 . + . transcript_id "g343.t1"; gene_id "g343"; # protein sequence = [MVCTTNDLQEWKDFPKGLRVLLLDGDSISAAEMRSKLEAMDYIVSTFCNENEALTAILDKPGSFHVAIVEVGPNDSHG # SFKFLETAKDLPTIMTSNIHCLSTVMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNTKSSFLSESLKPVKESVVSMLQLQLENGEPDNKISVETE # NVSLVHENDQHSVGSDKYPAPSTPQLKQGARLLDDGDCQDQTNCSTEKESGEQDGESKSVETTCGESIAEGTLQEGEPQIPGKNLIKEEEESADGFKN # ERKASPHQHNRDGRSNIDGGGGGLENLSKPSVNNSSGARANRKKMKVDWTSELHKKFVHAVEQLGVDQAIPSRILELMKVDGLTRHNVASHLQKYRMH # KRHILPKEDERRWPHTRDVMQRSYYPQRPIMAFPSYHSNHTISTAPIYPMWGSPGGHPTGVQMWGSPGYPAWQPTDNWHWKQPYLGMPADTWGCPVMT # TPHNPYPSFHQNTSGFHHAGAVHNNSCGISQNSFEIHPAEEVIDKVVKEAISSPWLPLPLGLKPPSTESVLTELSRQGISRIPPHIDGSNHHPH] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/11 # CDS introns: 0/10 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g343 ### # start gene g344 C.avellana_Jefferson_00015 AUGUSTUS gene 104736 105884 0.08 + . g344 C.avellana_Jefferson_00015 AUGUSTUS transcript 104736 105884 0.08 + . g344.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 104736 104736 . + . transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS exon 104736 104904 . + . transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 104784 104786 . + 0 transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS intron 104905 105215 0.47 + . transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS intron 105437 105544 1 + . transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS CDS 104784 104904 0.43 + 0 transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS CDS 105216 105436 0.97 + 2 transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS exon 105216 105436 . + . transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS CDS 105545 105652 1 + 0 transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS exon 105545 105884 . + . transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 105650 105652 . + 0 transcript_id "g344.t1"; gene_id "g344"; C.avellana_Jefferson_00015 AUGUSTUS tts 105884 105884 . + . transcript_id "g344.t1"; gene_id "g344"; # protein sequence = [MVESPGVQTIPWGQLAGEVGVLPDLCREGVLHGSEVYLTRGFSIELQALLFFLALVVRAANRPVEYDSDDELINAPRQ # QIRQPLLPPAAGVPVAGTHDQRPGRSDAWSARMREKYGLDTSEFTYNPSESHRLQQAATQPAEERSRCTIM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g344 ### # start gene g345 C.avellana_Jefferson_00015 AUGUSTUS gene 112656 121229 0.07 + . g345 C.avellana_Jefferson_00015 AUGUSTUS transcript 112656 121229 0.07 + . g345.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 112656 112656 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 112656 112704 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 112675 112677 . + 0 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS intron 112705 112820 1 + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS intron 112927 113009 0.98 + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS intron 113118 113678 0.94 + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS intron 113767 113851 0.98 + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS intron 113957 116367 1 + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS intron 117203 117759 0.76 + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS intron 117945 118345 0.99 + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS intron 118455 118589 1 + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS intron 118739 119381 0.99 + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS CDS 112675 112704 0.54 + 0 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS CDS 112821 112926 0.98 + 0 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 112821 112926 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS CDS 113010 113117 0.94 + 2 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 113010 113117 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS CDS 113679 113766 0.98 + 2 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 113679 113766 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS CDS 113852 113956 1 + 1 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 113852 113956 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS CDS 116368 117202 0.99 + 1 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 116368 117202 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS CDS 117760 117944 0.99 + 0 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 117760 117944 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS CDS 118346 118454 0.99 + 1 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 118346 118454 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS CDS 118590 118738 1 + 0 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 118590 118738 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS CDS 119382 119592 1 + 1 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 119382 119599 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 119590 119592 . + 0 transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS exon 120949 121229 . + . transcript_id "g345.t1"; gene_id "g345"; C.avellana_Jefferson_00015 AUGUSTUS tts 121229 121229 . + . transcript_id "g345.t1"; gene_id "g345"; # protein sequence = [MRAKQGKRPEPFWPSIVVKKWLNIKPQVYDFSEDEADTEAESEDDACSVKDAGIHADEDHAHRTQGNQSICPTQTSGT # TSFYTPSNGYRLRHRRGKSETLRAQYINTKDMRVTIGTWNVAGRVPDENLEIDDWLCTEEPADIYILGFQEVVPLNAGNVLGAEDNRPIPKWEAIIRK # TLNKSLEPESKYKSYSAPPSPVLRTSSVADELAAEVDAHPLDMMNEQYVSSAQRYDMEQEALDRVMDIGMNLQLKRIYGIDCDRRLDWPEHSLDATPQ # VISSNSKLRRVFSSSGRIGFNLTENSLLLSPKCFALDDVRLKRSHHSSGNLGLMPMEQQEKPEVLDSISDASSTFSDEEDDNFCDLPQEQHNYEVMKN # SGKSRPTYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSLVGVGLMGYMGNKGSVSVSMSLFQSRMCFVCSHLTSGQKDGADQRRNSDVFEIIRRTRF # SSIFDADQPQTIPSHDQIFWFGDLNYRINMLDTEVRKLVALRRWDELLNNDQLNKELRSGHVFDGWKEGVIDFPPTYKYEFNSDSYVGENPKEGEKKR # SPAWCDRILWLGKGIKQLSYERAELKLSDHRPVSSNFLVEVEVLDHRKLQRAINFTSVAVHPEIFLDEELESQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/3 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g345 ### # start gene g346 C.avellana_Jefferson_00015 AUGUSTUS gene 122546 125222 0.07 + . g346 C.avellana_Jefferson_00015 AUGUSTUS transcript 122546 125222 0.07 + . g346.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 122546 122546 . + . transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS exon 122546 122839 . + . transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 122621 122623 . + 0 transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS intron 122840 123243 1 + . transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS intron 123436 123891 0.86 + . transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS intron 124058 124719 0.94 + . transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS CDS 122621 122839 0.69 + 0 transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS CDS 123244 123435 0.88 + 0 transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS exon 123244 123435 . + . transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS CDS 123892 124057 0.82 + 0 transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS exon 123892 124057 . + . transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS CDS 124720 125138 0.98 + 2 transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS exon 124720 125222 . + . transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 125136 125138 . + 0 transcript_id "g346.t1"; gene_id "g346"; C.avellana_Jefferson_00015 AUGUSTUS tts 125222 125222 . + . transcript_id "g346.t1"; gene_id "g346"; # protein sequence = [MEVVRIFMVALFLALRGTQTLSVDDGSLAVDYYKESCPLVEDIVRRGVETAVFKDPRMAASLLRLHFHDCFVMGCDAS # VLLDSEGSLVSEKQAVPNLNSLRGFEVIDEIKYLLEEACPSTVSCADILAIAARDAVVHQGGPGWDVSKGRRDSVKASFNGANQFIPAPNSSLESLIA # NFQQQGLDVGDLVALSGSHTMGKARCFSFRQRVYDVSTQHHDPYKRYTTFRRILRSICPESGKDNEIAPLDFTTPARFDNHYYLNILQGEGLLGSDNV # LVTQDHEGEIIGQVWAYASNQKLFFDAFAKSIVKMGNINVLTGNEGEIRKNCRFLNS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g346 ### # start gene g347 C.avellana_Jefferson_00015 AUGUSTUS gene 126776 128231 0.09 + . g347 C.avellana_Jefferson_00015 AUGUSTUS transcript 126776 128231 0.09 + . g347.t1 C.avellana_Jefferson_00015 AUGUSTUS tss 126776 126776 . + . transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS exon 126776 126983 . + . transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 126813 126815 . + 0 transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS intron 126984 127127 0.76 + . transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS intron 127376 127544 1 + . transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS intron 127855 127941 1 + . transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS CDS 126813 126983 0.78 + 0 transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS CDS 127128 127375 0.8 + 0 transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS exon 127128 127375 . + . transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS CDS 127545 127854 1 + 1 transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS exon 127545 127854 . + . transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS CDS 127942 128163 0.94 + 0 transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS exon 127942 128231 . + . transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 128161 128163 . + 0 transcript_id "g347.t1"; gene_id "g347"; C.avellana_Jefferson_00015 AUGUSTUS tts 128231 128231 . + . transcript_id "g347.t1"; gene_id "g347"; # protein sequence = [MDSDEVLSRKDFGGSLPVENVQALASKSLKDIPPQYLLTEMENEELFIDDSLQIPVILINHRVPEEVIEKMKTDTQEF # FQLPLEEKKVYAQLPNNIEGYGQASVVSEDQKLDWSDMLFLLPQPVHQRNMRFWPTIPTSFRNFGQILIGAAKTYNQPSENGGPEPEKLTSMFEDGTQ # GVRMNYYPPCIQANKVMGLTPHSDATGLTLLTQVNDVQGLQIKKNGKWISIEPIPGAFIVNIGDVFEIMSNGKYKSIEHRAIVNPTMERLSIAAFHSP # NISTMIGPLPDIMKGEKAIYKTLNHEDYVRVVFANKLDGKTT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g347 ### # start gene g348 C.avellana_Jefferson_00015 AUGUSTUS gene 133879 138731 0.02 - . g348 C.avellana_Jefferson_00015 AUGUSTUS transcript 133879 138731 0.02 - . g348.t1 C.avellana_Jefferson_00015 AUGUSTUS tts 133879 133879 . - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS exon 133879 134495 . - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS stop_codon 134315 134317 . - 0 transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS intron 134496 134671 0.99 - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS intron 134754 135553 0.96 - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS intron 135696 135797 0.57 - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS intron 135966 136046 1 - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS intron 136191 136582 0.42 - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS intron 136793 137618 0.83 - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS intron 137751 138345 0.8 - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS CDS 134315 134495 0.98 - 1 transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS CDS 134672 134753 0.96 - 2 transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS exon 134672 134753 . - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS CDS 135554 135695 0.57 - 0 transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS exon 135554 135695 . - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS CDS 135798 135965 1 - 0 transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS exon 135798 135965 . - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS CDS 136047 136190 0.84 - 0 transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS exon 136047 136190 . - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS CDS 136583 136792 0.41 - 0 transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS exon 136583 136792 . - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS CDS 137619 137750 0.83 - 0 transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS exon 137619 137750 . - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS CDS 138346 138507 0.9 - 0 transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS exon 138346 138731 . - . transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS start_codon 138505 138507 . - 0 transcript_id "g348.t1"; gene_id "g348"; C.avellana_Jefferson_00015 AUGUSTUS tss 138731 138731 . - . transcript_id "g348.t1"; gene_id "g348"; # protein sequence = [MAAASVTLPCASSSSASSSSAAASSSLFSRSCSLGHRRFVSYDSRSRAHAPNSVPIVPILNERTLPKFLETARMEKTV # NRTSTRLKLFSGTANPALSQEIAWYMGLELGKINIKRFADGEIYVQLQESVRGCDVYLIQPTCPPANENLMELLIMIDACRRASAKTITATQGRESIA # AKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYAQPVILDYLASKTISSQDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEMP # VRTCSLVGDIFHILKLMVNASQVMNLIGDVKGKVAVMMDDMIDTAGTIAKGAALLHEEGAREVYACCTHAVFSPPAIERLSSGLFQEVIITNTIPIAE # KNYFPQLTVLSVANLLGETIWRVHDDCSVSSIFQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g348 ### # # ----- prediction on sequence number 16 (length = 146594, name = C.avellana_Jefferson_00016) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 16 on both strands # start gene g349 C.avellana_Jefferson_00016 AUGUSTUS gene 1656 3744 0.07 + . g349 C.avellana_Jefferson_00016 AUGUSTUS transcript 1656 3744 0.07 + . g349.t1 C.avellana_Jefferson_00016 AUGUSTUS tss 1656 1656 . + . transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS exon 1656 2266 . + . transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 1730 1732 . + 0 transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS intron 2267 2677 1 + . transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS intron 2852 2947 1 + . transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS intron 3080 3189 1 + . transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS CDS 1730 2266 1 + 0 transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS CDS 2678 2851 1 + 0 transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS exon 2678 2851 . + . transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS CDS 2948 3079 1 + 0 transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS exon 2948 3079 . + . transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS CDS 3190 3417 1 + 0 transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS exon 3190 3744 . + . transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 3415 3417 . + 0 transcript_id "g349.t1"; gene_id "g349"; C.avellana_Jefferson_00016 AUGUSTUS tts 3744 3744 . + . transcript_id "g349.t1"; gene_id "g349"; # protein sequence = [MAAMLRENRRSAGEASRNGIVQRMVNLPRNIIGGFSRAMGIGRRNQHLPFNFHLQEPEEHIVGAEEWAFLGCFEQQYG # SYHPFFYACQFMETLKLAEEDHKFMFVYLHSPEHPFTPSFCRDTLCSELVVQFLDANFVCWGALASRGEGLQMAATFRPTSFPFCAVIAPAPGDSLAV # LQQMEGPISPAELVETLQRTVEEQGLAFGGARAKQEEKIKADRRLREEQDAAYLASLKIDKEKEKLKNNHKQYAKVKESAITKETPHKEVANFGVKVL # KDPQATQMLIRFPNGERREQSFASTDKVQSIYRYIDSLGIPGIGNYRLVSSFPRKVYGVDQMGMTLKDSGLHPRGSLFLEPL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g349 ### # start gene g350 C.avellana_Jefferson_00016 AUGUSTUS gene 11706 14035 0.06 + . g350 C.avellana_Jefferson_00016 AUGUSTUS transcript 11706 14035 0.06 + . g350.t1 C.avellana_Jefferson_00016 AUGUSTUS tss 11706 11706 . + . transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS exon 11706 11854 . + . transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 11726 11728 . + 0 transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS intron 11855 12509 0.97 + . transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS intron 12663 13080 0.69 + . transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS intron 13228 13593 0.58 + . transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS intron 13709 13786 0.91 + . transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS CDS 11726 11854 0.44 + 0 transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS CDS 12510 12662 0.97 + 0 transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS exon 12510 12662 . + . transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS CDS 13081 13227 0.69 + 0 transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS exon 13081 13227 . + . transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS CDS 13594 13708 0.56 + 0 transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS exon 13594 13708 . + . transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS CDS 13787 13872 0.91 + 2 transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS exon 13787 14035 . + . transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 13870 13872 . + 0 transcript_id "g350.t1"; gene_id "g350"; C.avellana_Jefferson_00016 AUGUSTUS tts 14035 14035 . + . transcript_id "g350.t1"; gene_id "g350"; # protein sequence = [MALRLCQNLRHPLVPPTNFSMKATRTRKLSVMNYTLDPKDSRKLVLEVKEKLEKEYHSLPVGKNGRDDEDMILWFLKD # RKFYVEDAVSKLTKAIKWRQEFKVSELSEELVKNVAQTGKAYVHDFLDVNDRPVLIVVASKHFPAMQDPAENEKLCVLMIEKALGKLPAGKEEILGIF # DLRGFGNLNLDICVVSLAPVAGIILSNESNATL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g350 ### # start gene g351 C.avellana_Jefferson_00016 AUGUSTUS gene 16050 18221 0.05 - . g351 C.avellana_Jefferson_00016 AUGUSTUS transcript 16050 18221 0.05 - . g351.t1 C.avellana_Jefferson_00016 AUGUSTUS tts 16050 16050 . - . transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS exon 16050 16553 . - . transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 16331 16333 . - 0 transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS intron 16554 17335 0.99 - . transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS intron 17520 18021 0.99 - . transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS CDS 16331 16553 0.99 - 1 transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS CDS 17336 17519 1 - 2 transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS exon 17336 17519 . - . transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS CDS 18022 18148 1 - 0 transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS exon 18022 18221 . - . transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 18146 18148 . - 0 transcript_id "g351.t1"; gene_id "g351"; C.avellana_Jefferson_00016 AUGUSTUS tss 18221 18221 . - . transcript_id "g351.t1"; gene_id "g351"; # protein sequence = [MQSVRKFIAGGHRIGVRCVSTADSASLRKSVVSLLDSLSLKPGATLVQNCGDSDIGKVVVQVAKERNLQTVSIFEDKP # GSPDIIEELKALGGDIVVPESYTKTWYMKRLAGELRPSAGLNFSDGSQATAVCKAVTSGGTFLTYGKKLPKYVAYDGAAHKPVEWDAFLKQKNLKVLN # F] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g351 ### # start gene g352 C.avellana_Jefferson_00016 AUGUSTUS gene 18656 22179 0.2 + . g352 C.avellana_Jefferson_00016 AUGUSTUS transcript 18656 22179 0.2 + . g352.t1 C.avellana_Jefferson_00016 AUGUSTUS tss 18656 18656 . + . transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS exon 18656 18945 . + . transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 18749 18751 . + 0 transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS intron 18946 20695 0.84 + . transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS intron 21124 21415 0.7 + . transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS CDS 18749 18945 1 + 0 transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS CDS 20696 21123 0.71 + 1 transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS exon 20696 21123 . + . transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS CDS 21416 21636 0.62 + 2 transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS exon 21416 22179 . + . transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 21634 21636 . + 0 transcript_id "g352.t1"; gene_id "g352"; C.avellana_Jefferson_00016 AUGUSTUS tts 22179 22179 . + . transcript_id "g352.t1"; gene_id "g352"; # protein sequence = [MEKSRWVVVVLCLGFLGLCSALESPPYTVVHSESDFEIRLYRDATWMSAPVKDISFDKATKRGFHRLFQYIQGANLNF # SRIAMTAPVLTSIVPEAGPLHSSAYFVQFYLPVKFQASPPLPLPELNLKPCAWDTSRCIAVRKFSGFARDGNIVEEAEKLGISLSRSPWANSTSSASG # YAYSIAQYSSPFRIIGRVNEVWVDINASELDGXIVPIGEVEDIDRLVSIFGCRVAGLAMKYLSLPLGAPYKSTTIWNGIXXXXCGKEIGGLKEAVFIK # GMEVSVD] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g352 ### # start gene g353 C.avellana_Jefferson_00016 AUGUSTUS gene 26650 29251 0.23 - . g353 C.avellana_Jefferson_00016 AUGUSTUS transcript 26650 29251 0.23 - . g353.t1 C.avellana_Jefferson_00016 AUGUSTUS tts 26650 26650 . - . transcript_id "g353.t1"; gene_id "g353"; C.avellana_Jefferson_00016 AUGUSTUS exon 26650 27320 . - . transcript_id "g353.t1"; gene_id "g353"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 26779 26781 . - 0 transcript_id "g353.t1"; gene_id "g353"; C.avellana_Jefferson_00016 AUGUSTUS intron 27321 28016 0.99 - . transcript_id "g353.t1"; gene_id "g353"; C.avellana_Jefferson_00016 AUGUSTUS CDS 26779 27320 1 - 2 transcript_id "g353.t1"; gene_id "g353"; C.avellana_Jefferson_00016 AUGUSTUS CDS 28017 29160 0.97 - 0 transcript_id "g353.t1"; gene_id "g353"; C.avellana_Jefferson_00016 AUGUSTUS exon 28017 29251 . - . transcript_id "g353.t1"; gene_id "g353"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 29158 29160 . - 0 transcript_id "g353.t1"; gene_id "g353"; C.avellana_Jefferson_00016 AUGUSTUS tss 29251 29251 . - . transcript_id "g353.t1"; gene_id "g353"; # protein sequence = [MEPKSPSKLKLSIKGFTQYKQLLKTSIIILVVVLLLVGVYFAFSPGKGGSVVKGSYFVVVVDCGSTGTRVNVYEWMVG # GVSRMHFPLLLHSYPDNISKSSLRKNSCQYHCMQTEPGLDKFVGNSSGVRASLEPLLIWAEQVVPHERQGDTPIFVLGTAGLRRLAFENARRVLEDVE # ALVKEHMFLYRKSWIRVLSGKEEAHYGWVALNYKMGSFKNYSRSPTLGLIDLGGSSLQVVMEIDDAREDINLVTSKIGSMEHKILAYSLPAFGFNEAF # DRSVVMLSQAQWSGENTGNTLEVRHPCLGSDFVQNITCSGCLGLNTTDQKKMWSQIWKAEVPTLYLVGDPNWERCKELARTAAIISSSLDWSRPAIHT # NCKGSSSYGGSDIINLTAVTHPSMRFHALSGFFVVHNTLNLSPRANLTKIWEEGQHLCSRSWVNLSSISRNQNYARQYCFQVPYMASLIEDALCLGDK # EIVFGPGDVSWTLGAALIEGEQLLLRATKAQTSSSTLKNIAMSSPVVLFVLLLCLLFIIYHFQIKLPMPSMKAAAAGVSLPSYTHPKRRPN] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g353 ### # start gene g354 C.avellana_Jefferson_00016 AUGUSTUS gene 36063 37401 0.1 - . g354 C.avellana_Jefferson_00016 AUGUSTUS transcript 36063 37401 0.1 - . g354.t1 C.avellana_Jefferson_00016 AUGUSTUS tts 36063 36063 . - . transcript_id "g354.t1"; gene_id "g354"; C.avellana_Jefferson_00016 AUGUSTUS exon 36063 36662 . - . transcript_id "g354.t1"; gene_id "g354"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 36297 36299 . - 0 transcript_id "g354.t1"; gene_id "g354"; C.avellana_Jefferson_00016 AUGUSTUS intron 36663 37002 0.65 - . transcript_id "g354.t1"; gene_id "g354"; C.avellana_Jefferson_00016 AUGUSTUS CDS 36297 36662 0.96 - 0 transcript_id "g354.t1"; gene_id "g354"; C.avellana_Jefferson_00016 AUGUSTUS CDS 37003 37347 0.55 - 0 transcript_id "g354.t1"; gene_id "g354"; C.avellana_Jefferson_00016 AUGUSTUS exon 37003 37401 . - . transcript_id "g354.t1"; gene_id "g354"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 37345 37347 . - 0 transcript_id "g354.t1"; gene_id "g354"; C.avellana_Jefferson_00016 AUGUSTUS tss 37401 37401 . - . transcript_id "g354.t1"; gene_id "g354"; # protein sequence = [MSSSSRLERNPRCSLLKKAPTGLASFWRWRCTQSGGWRRLIMIPERREGQGWSHFATELSKGKVFFDSTVGKGITVMV # LCLLSSVPSSSGKEVGFGVGKGTTHLGVPFCVCEGLEVNAFKCHRLSFPYLIEAGVLTSRFGISKHTDSPRSPPKFAGDFTLSIIRLRVSLVQASKVG # WSKMLGHLRSVPPLTNCFWVLRVVYHIRRERVNDGLDGGDGYGNGIDVALCLLDGMGWWW] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g354 ### # start gene g355 C.avellana_Jefferson_00016 AUGUSTUS gene 38426 47103 0.05 + . g355 C.avellana_Jefferson_00016 AUGUSTUS transcript 38426 47103 0.05 + . g355.t1 C.avellana_Jefferson_00016 AUGUSTUS tss 38426 38426 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS exon 38426 38681 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS exon 38908 39037 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 38939 38941 . + 0 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS intron 39038 39498 0.35 + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS intron 39699 39772 0.57 + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS intron 39869 40130 0.81 + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS intron 40507 41605 0.97 + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS intron 41706 42124 0.99 + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS intron 42206 42326 0.99 + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS intron 43666 43755 1 + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS intron 44024 44093 0.92 + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS CDS 38939 39037 0.45 + 0 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS CDS 39499 39698 0.53 + 0 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS exon 39499 39698 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS CDS 39773 39868 0.6 + 1 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS exon 39773 39868 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS CDS 40131 40506 1 + 1 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS exon 40131 40506 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS CDS 41606 41705 0.99 + 0 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS exon 41606 41705 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS CDS 42125 42205 0.99 + 2 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS exon 42125 42205 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS CDS 42327 43665 1 + 2 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS exon 42327 43665 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS CDS 43756 44023 0.92 + 1 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS exon 43756 44023 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS CDS 44094 46679 1 + 0 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS exon 44094 47103 . + . transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 46677 46679 . + 0 transcript_id "g355.t1"; gene_id "g355"; C.avellana_Jefferson_00016 AUGUSTUS tts 47103 47103 . + . transcript_id "g355.t1"; gene_id "g355"; # protein sequence = [MTVLGKVVVPKPVNLPSQRYLVPAEIFLVHFTEMATAKFEVKKFDGQKSSAFGESRCVFSEDFGWRGAIDIIWEHHVC # YGAHLLSVQMFHMQSVLLVLKRNSGMGSSVVCYGAHLSSVQMFHMQSVLVVLKRGTHSWGSRSSSSTSNAWSSSVLSPRNDGRPGSPSYLSGRPSSGG # SGTRPSTASSDRAHEPTASAWGANSRPSSASGALTSNQTSLTSLRPRSAETRPGSSQLSRFAESLPENPGAWGAAGTAEKLGVTAAKNDGFSLTSGDF # PTLGSEKDNSVKNESQDHGSHGRPGSSSGEVGPPKERNGTSIVGDVSVNVDVKIGTANSWRRDSPPYSEDGVTSSVERWQGNPQPYPNPSIPPQHYEA # WHGPPVTNPPGGVWFRGPPGGPPYGAPVAPGGFPMEPYSYYRPHIPPALANPQPGPPPGGRPRGHHPKNGDMYRPHMPDAYIRPGMPIRPGFYPGPVA # YEGYYGGPMGYCSSNERDVPFMGMSPGTSVYNNRYPNQNAPEPTNSQGRSGGYSSTGKTLVSEHVESGHPNDNQGPYKVLLKQQNGWDGKNEEKKWED # TTTTNATYVEKGDQTEVSSWENDWRSDYRNNGEMGSRRMVPGQEISSQTYDDQQSHSSVPVKVKSPESTGNMKAFDDSSARNLERASSGLSEVRGPVS # VVPKDSTLIRKIEGLNAKVRASDGQDITSITGWEEQKNKIHVHNTKANHSKNEGGSGFVHTERTHATGIMNPASHEMGVSAGDKSLESTAAGGTTISR # RSTHGMQGRSGNHGKGGINSKEADSRHKKIRAIDSPSVVSTSRFQTNSNVHVHDRYTSEASEKSGPYPQAREEKESAPPVCDPSDYQVQRTKLRELEL # EQRAKQLREEEEERTRKQKARALAKLEDLDRRKHSNEGSMHKSENASCVAIQNKQELNVVPRISEGNTSRDEQFPVLSSELPPEKPKSTNEEPIVHKH # SVSLQQDADSADVAYRTNAPHVHDGNVSKHKSVGYKQKKNLLPEKSSNEKSTFTSTNEAPNSEANAVRKVAISIGRFTDEIALNCKSSLSVNENAVVE # STRLPVNVNSVAESSSFPVNPNAVAESSSMPMNSNAAADSSIHQRKKSRSGKNKHKVEAASSMAALPLSESKETNLVNASLESGRAMTSETELDPNLI # QSVTISEDANQLLEHHSSLSSEDSHGRGSNSQWKSQHSRRMARNPQVNRSAEKFHGDVIWAPVRSQNKADTDEASQKIVDEAIAPSMKSEHQVQSNPK # NKRAEIERYVPKPVAKEMAQQGSIQQPVASSINHSTYDETVGRADSSPQGTESTEPAGSGAGKVGPALEPRNGNGKQNKQGKAHGSWWQRVSTESVSV # QSMHDGPSSHPGRNAKKLIEDYQPQKPDVSSVKEQPKYSDEQNAPDGQKAPDNSDSVASVGVTVVKDQVVTGRVKRHPFKGQKGMGHNNDLDHKRINS # GDTSKINTQSSALEMSQTDLPTASKETRGIGERSTAHWQPKSQSFSANNQLGSKSNSGRSVGAGAAWTNKKENTPQGVVPQAPQHSEGVSQPRHDQSP # SEKSDAEEALNVGYQEATRGRKVGSFKGRPLSPSHVPVGPVEHAPASMDVRHEQRSSSGFRRSANQNNNRFDRGHESRGDWNSSGQESKHLHVPVNWE # RQRHNAHYEYQPVGPYNNNKSNNAEGLKDGTHNTGSRFRERGQIQSRRGGGNFYGRQRSNDRVDAGYE] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g355 ### # start gene g356 C.avellana_Jefferson_00016 AUGUSTUS gene 49826 56762 0.03 + . g356 C.avellana_Jefferson_00016 AUGUSTUS transcript 49826 56762 0.03 + . g356.t1 C.avellana_Jefferson_00016 AUGUSTUS tss 49826 49826 . + . transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS exon 49826 49990 . + . transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS exon 54003 54070 . + . transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 54034 54036 . + 0 transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS intron 54071 54289 0.43 + . transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS intron 54729 55610 0.37 + . transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS intron 55677 55815 0.34 + . transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS CDS 54034 54070 0.81 + 0 transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS CDS 54290 54728 0.49 + 2 transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS exon 54290 54728 . + . transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS CDS 55611 55676 0.34 + 1 transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS exon 55611 55676 . + . transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS CDS 55816 56089 0.7 + 1 transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS exon 55816 56762 . + . transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 56087 56089 . + 0 transcript_id "g356.t1"; gene_id "g356"; C.avellana_Jefferson_00016 AUGUSTUS tts 56762 56762 . + . transcript_id "g356.t1"; gene_id "g356"; # protein sequence = [MILKFENAEGEISASPRHRGKPKPLRISAFKGNAQNDESAGRASGSKVPKNSVKLKESEDTILESPKANDIPLSYTSE # ANESIVSSPAIHNLFKKWLTMLRTQSPSQVGDGVLGGEPPLREMSESQHDTQKKERGEILKAAWCYFLGLDAAVKIPLLIFLPLYLAVNVIYGVEVSK # ELTPFFNITLTVIKNLPTYCMVAFSYIASGKLKEDVRARFWQPVVNIKNLDYKELSRKRMKELQEWIVERYLDYVESIWPYYCRTIRFLKRANLL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g356 ### # start gene g357 C.avellana_Jefferson_00016 AUGUSTUS gene 58616 61271 0.2 + . g357 C.avellana_Jefferson_00016 AUGUSTUS transcript 58616 61271 0.2 + . g357.t1 C.avellana_Jefferson_00016 AUGUSTUS tss 58616 58616 . + . transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS exon 58616 58750 . + . transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 58738 58740 . + 0 transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS intron 58751 58876 0.8 + . transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS intron 59003 60230 0.79 + . transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS intron 60575 60862 0.86 + . transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS CDS 58738 58750 0.84 + 0 transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS CDS 58877 59002 0.71 + 2 transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS exon 58877 59002 . + . transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS CDS 60231 60574 0.85 + 2 transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS exon 60231 60574 . + . transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS CDS 60863 61078 0.88 + 0 transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS exon 60863 61271 . + . transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 61076 61078 . + 0 transcript_id "g357.t1"; gene_id "g357"; C.avellana_Jefferson_00016 AUGUSTUS tts 61271 61271 . + . transcript_id "g357.t1"; gene_id "g357"; # protein sequence = [MCHSKQTEYNEIELDASEQENHWPNAEDVSPASSSYIHFVGTGGKPDFLILFFTEALFYSGVAVFLLLIDHIRRPIEP # DSATGTHRTLASHRGQRISSVAALVLSLIIPMVTMGFVWPWTGPAASATLAPYLVGIVVQFAFEQYARYKKSPSWSVIPIIFQVYRLHQLNRAAQLVT # ALSFTVRGAEMTSHNLAINSSLSTLLNVLQFLGVICIWSLSSFLMRFFPSTAMTVQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g357 ### # start gene g358 C.avellana_Jefferson_00016 AUGUSTUS gene 68646 71970 0.45 + . g358 C.avellana_Jefferson_00016 AUGUSTUS transcript 68646 71970 0.45 + . g358.t1 C.avellana_Jefferson_00016 AUGUSTUS tss 68646 68646 . + . transcript_id "g358.t1"; gene_id "g358"; C.avellana_Jefferson_00016 AUGUSTUS exon 68646 71970 . + . transcript_id "g358.t1"; gene_id "g358"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 68802 68804 . + 0 transcript_id "g358.t1"; gene_id "g358"; C.avellana_Jefferson_00016 AUGUSTUS CDS 68802 71741 0.82 + 0 transcript_id "g358.t1"; gene_id "g358"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 71739 71741 . + 0 transcript_id "g358.t1"; gene_id "g358"; C.avellana_Jefferson_00016 AUGUSTUS tts 71970 71970 . + . transcript_id "g358.t1"; gene_id "g358"; # protein sequence = [MDSIQMSQLVLFLSALGSFLAVTLGDNSAVAYSWLLRVKSELTDPAGVLENWSPSSHICSWNGLTCSDDQTRILGLNL # SDSRLSGSLSHDLGRFTSLETLDLSSNSLSGPIPPELGQLQNLRMLLLYTNYLSGKLPAEIGLLKKLQVLRIGDNMLTGEITPTIGNLTELRVLGLAY # CQFNGSIPIETGNLKHLISLDLQNNSLNGLIPEEIFHGCEGLQNFAASNNQLQGDIPSSIGMLKSLQILNLANNSISGSIPIALSRLSNLKYLNLLGN # ELSGEIPSELNQLVQLQKLDLSRNNLSGSISLLNTQLMNLEALVLANNDLTGSIPSNFCLRNSNLQQLLLARNELSGKFPLELLSCSSLQQLDLSDNR # FEGELPSLLDKLENLTDLILNNNSFTGTLPPQIGNLSKLENLFLFDNMITGEVPVEIEKLQALRVIYLYDNQMSGNIPRELTNCTSLTEIDFFGNHFT # GSIPATIGKLKNLVLLQLRQNYLSGPIPPSLGYCKRLQLLALADNKLSGSLPPTFRFLSELSTITLYNNSFQGPLPTSLFLLKNLKIINFSHNRFSGA # IFPLSGSNSLTVLDLTNNSFSGPIPSTLAMSRNLGRLRLAHNHLTGNIPPIFNQLTQLNFLDLSFNNLSGGLQPSQLSSCTKLQHLLLNNNHFNGTMP # PWLGSLQELGELDLSSNSFYGTVPAELGNCSTLLKLSLHSNTLSGEIPPEIGNLTSLNVLTLQRNNLSGSIPSTIQQCKKLYELRLSENILTGSIPSE # LGRLTQLQVILDLSKNLLSGEIPSSLGNLVNLERLNLSSNQLQGEVPPSLGKLTSLHMLNLSNNHLQGQIPSTLPGIFPLSSFLGNAKLCGPPLAMCS # ESAGQEKKQLSETEVVGIIVAIVFTSTVICLVMLYIMWRIWCHWREVSISSADGGGIEEKREEGKRVIYGDKIRRNGEYWKVNSMALVSSQDKPNSTI # LARIFHLRMDSEAMENTLF] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g358 ### # start gene g359 C.avellana_Jefferson_00016 AUGUSTUS gene 80519 85821 0.05 - . g359 C.avellana_Jefferson_00016 AUGUSTUS transcript 80519 85821 0.05 - . g359.t1 C.avellana_Jefferson_00016 AUGUSTUS tts 80519 80519 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS exon 80519 80808 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 80698 80700 . - 0 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS intron 80809 81371 0.82 - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS intron 81415 81870 0.91 - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS intron 81951 82508 0.92 - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS intron 82622 82709 1 - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS intron 82916 84009 0.99 - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS intron 84122 84231 0.85 - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS intron 84284 84784 0.86 - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS intron 84878 85401 0.89 - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS intron 85549 85633 1 - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS CDS 80698 80808 0.82 - 0 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS CDS 81372 81414 0.82 - 1 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS exon 81372 81414 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS CDS 81871 81950 0.9 - 0 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS exon 81871 81950 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS CDS 82509 82621 0.93 - 2 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS exon 82509 82621 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS CDS 82710 82915 0.99 - 1 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS exon 82710 82915 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS CDS 84010 84121 0.96 - 2 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS exon 84010 84121 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS CDS 84232 84283 0.83 - 0 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS exon 84232 84283 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS CDS 84785 84877 0.9 - 0 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS exon 84785 84877 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS CDS 85402 85548 0.99 - 0 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS exon 85402 85548 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS CDS 85634 85768 0.14 - 0 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS exon 85634 85821 . - . transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 85766 85768 . - 0 transcript_id "g359.t1"; gene_id "g359"; C.avellana_Jefferson_00016 AUGUSTUS tss 85821 85821 . - . transcript_id "g359.t1"; gene_id "g359"; # protein sequence = [MMGASLGRWLQDIRVSGETKKIGTIPGWKTVNEQHIANQFHYSLRVYLSILYLRVPERFNIILRGRVVEHHNIALDLK # FPEFILYRPQSGGCVEGQVITSIGFLKEAPLVGFHGFNVYHKNRLILPFWQVLSYQNSRGRGVVGVLEANFIEPTHNKQDFERTSLFQKLEARLKEMT # FEYWDYHCGLIGYHSNKIPRVPVTPQVSSHCMPHSSKQLDMSKINSPAISGLEAALGRSEQSISKSQSISELGLRVKRKEHGDIIEVEKAKRQAVEVV # NVTDSGHCQDIQALNAADNQPKDQETVNLLQANKKLHAECLEYEKREEELKLKVTQLKIEIEEVQHEYDRMLGELKSLSTVKDEKNALI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g359 ### # start gene g360 C.avellana_Jefferson_00016 AUGUSTUS gene 88840 97071 0.01 - . g360 C.avellana_Jefferson_00016 AUGUSTUS transcript 88840 97071 0.01 - . g360.t1 C.avellana_Jefferson_00016 AUGUSTUS tts 88840 88840 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 88840 89936 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 89754 89756 . - 0 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 89937 90149 0.55 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 90283 91238 1 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 91412 91488 0.55 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 91927 92016 0.85 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 92300 92608 0.64 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 92825 92900 0.82 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 93066 93778 0.12 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 93995 94442 0.93 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 94519 94598 1 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 94689 94818 1 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 94898 95948 1 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 95984 96094 0.93 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS intron 96170 96482 0.94 - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 89754 89936 0.34 - 0 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 90150 90282 0.77 - 1 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 90150 90282 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 91239 91411 0.55 - 0 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 91239 91411 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 91489 91926 0.72 - 0 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 91489 91926 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 92017 92299 0.86 - 1 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 92017 92299 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 92609 92824 0.77 - 1 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 92609 92824 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 92901 93065 0.36 - 1 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 92901 93065 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 93779 93994 0.38 - 1 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 93779 93994 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 94443 94518 1 - 2 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 94443 94518 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 94599 94688 1 - 2 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 94599 94688 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 94819 94897 1 - 0 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 94819 94897 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 95949 95983 0.99 - 2 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 95949 95983 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 96095 96169 0.94 - 2 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 96095 96169 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS CDS 96483 96846 0.57 - 0 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS exon 96483 97071 . - . transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 96844 96846 . - 0 transcript_id "g360.t1"; gene_id "g360"; C.avellana_Jefferson_00016 AUGUSTUS tss 97071 97071 . - . transcript_id "g360.t1"; gene_id "g360"; # protein sequence = [MSFIDIVDLSSDDECGHLNVKAVKLEPGIVGGRIQQKENKVQLVKRHKSQTQCGRQESEENRGSNALSTGKSSSRIWD # QGQSPVDDTSLPSTSPTCPAPLCRQFWKAGNYDDGLGSKVSLQNGKNYLHVHPLFLHSNATSHKWVFGAVAELLDNAVDEIQNGATFVLVDKTTNPKD # GGPALLIQDDGGGMDPVAIRRCMSFGFSDKKSKSAIGQYGNGFKTSTMRLGADAIVFSRHLNNRWRRAVALSTIIDGAGVGGRVAARRRSSVQGETPG # FTFATLASLPLCMAGDEVAIVPLSTRLSNFVFGSKVCRVEDFIKSYREGSKVTIVRRSGNRSGRFLEVAVYDMGGWRGLVLILEGLMGGLGVVGGAFG # GSCLCQRLRAFGSDCSSAGCVGAGTSAVGGDLGWFGEESSTWSGLLRGGSTIGGLLRFGEAIAQSPRSDASLDTGYETSMGVGVNEGRVSVTCVILCL # MLSAAVDGLVSTFSGLVSVSFRLESYVPVSFMHASPFCASLYASLLYLCSFVSATGSSECLFGGFSLGPIFIEVGSDSFGASLLGAATLGERLCFSLP # VMLGCGAPIYSSKSKSVLRYYCRLKVGRXXXXRFSLPVMLGCGAPIYSSKSKSVLRYYCRLKVGRGAQMNASLIDEVVTTISAPMVPFLGASSQALVW # TVVQSLSEPGGGARFLNFMAQVDERQCQEVLVSTPKPKGRRELKNLESSINFDARRVGSSRDRGKRALPAIVWQCGEPEKNLMEVLNVLDGLEEESVL # CDEEKLRKDMAIGDLERFSWGPKLDGLAYDSIDEEGAIWLERPFEEIEVLKVVKGMNSDRVLDLDGLLWLSSKRVGI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/14 # CDS introns: 0/13 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g360 ### # start gene g361 C.avellana_Jefferson_00016 AUGUSTUS gene 120426 130853 0.04 + . g361 C.avellana_Jefferson_00016 AUGUSTUS transcript 120426 130853 0.04 + . g361.t1 C.avellana_Jefferson_00016 AUGUSTUS tss 120426 120426 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 120426 120468 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 120678 121049 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 120686 120688 . + 0 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 121050 121552 0.7 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 121588 122409 0.65 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 122489 122623 0.76 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 122714 122792 0.89 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 122869 124455 0.82 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 124604 125084 0.89 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 125184 125272 0.97 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 125375 125459 0.91 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 125601 126273 0.72 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 126367 127260 0.73 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 127403 128984 0.78 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 129078 129912 0.78 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 130007 130083 0.87 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS intron 130285 130389 0.34 + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 120686 121049 0.65 + 0 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 121553 121587 0.87 + 2 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 121553 121587 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 122410 122488 0.76 + 0 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 122410 122488 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 122624 122713 0.9 + 2 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 122624 122713 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 122793 122868 0.88 + 2 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 122793 122868 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 124456 124603 0.62 + 1 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 124456 124603 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 125085 125183 0.97 + 0 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 125085 125183 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 125273 125374 0.97 + 0 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 125273 125374 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 125460 125600 0.86 + 0 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 125460 125600 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 126274 126366 0.77 + 0 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 126274 126366 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 127261 127402 0.66 + 0 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 127261 127402 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 128985 129077 0.8 + 2 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 128985 129077 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 129913 130006 0.84 + 2 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 129913 130006 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 130084 130284 0.4 + 1 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 130084 130284 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS CDS 130390 130720 0.36 + 1 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS exon 130390 130853 . + . transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 130718 130720 . + 0 transcript_id "g361.t1"; gene_id "g361"; C.avellana_Jefferson_00016 AUGUSTUS tts 130853 130853 . + . transcript_id "g361.t1"; gene_id "g361"; # protein sequence = [MSFIDIVDLSSDDECGHLNVKAVKLEPGIVGGTIQQKENEVQLVKCQKSETQCRRQESEESKSSNSLSTGKSSSRILD # RGQSPLDDTSLPSTSPMCPAPLCRQFWKAGNYDDGLGSKVSLQTVAELLDNAVDEIQNGATFVLVDKTTNPKDGSPALLIQDDGGGMDPAAMRHCMSF # GFSDKKSKSAIGQYGNGFKTSTMRLGADVIVFSRHLSNSPPCRLQVDYEFNTSTGTLEILHGKEHFMSNLSMLLQWSPFLTEAELLKQFDDIGAHGTK # AIIYNLWVNDDGDVELDFESDPEDIRVSGETKKIDTLPALKTINEQHIANQFHYSLRVYLSILYLRVPERFNIILRGRVVEYHNIANDLKFPECILYR # PQGCVEGQVITTVGFLKEAPRVGFHGFNVYHKNRLILHYASINCKRKEVTFISPGDKEFKFCGAQVQATPLPLSAVQAKRCIEDAHPRDGEAQFGHSA # QLDAGIHCNTSNPTSDVDKSRRDLEFKASEVSPMKGVVQSGKKGKLNLRSARCVPRIYFAEVLIRPFACGQLRTTIDSRKPNLRGRVVNKEDPTCQDL # MAESGVRGSLVEVGAKKDKGCFLFKKLKRWSQFPKTLKAIGLCLTWRALGKEWGDWDWTKEYFDTGYIDYVAVDASLLDNEALPETECSYSTLTRRIQ # TWTIWTSNSFGLHKWPRMRNGMHFISMMK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/15 # CDS introns: 0/14 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g361 ### # start gene g362 C.avellana_Jefferson_00016 AUGUSTUS gene 131436 138990 0.01 + . g362 C.avellana_Jefferson_00016 AUGUSTUS transcript 131436 138990 0.01 + . g362.t1 C.avellana_Jefferson_00016 AUGUSTUS tss 131436 131436 . + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS exon 131436 131541 . + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS exon 134598 134668 . + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS start_codon 134603 134605 . + 0 transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS intron 134669 134874 0.6 + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS intron 134957 135033 0.51 + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS intron 135146 136385 0.94 + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS intron 136592 136674 1 + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS intron 136788 137563 0.9 + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS intron 137644 138078 1 + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS intron 138122 138354 1 + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS CDS 134603 134668 0.61 + 0 transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS CDS 134875 134956 0.51 + 0 transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS exon 134875 134956 . + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS CDS 135034 135145 0.84 + 2 transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS exon 135034 135145 . + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS CDS 136386 136591 0.95 + 1 transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS exon 136386 136591 . + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS CDS 136675 136787 0.9 + 2 transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS exon 136675 136787 . + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS CDS 137564 137643 1 + 0 transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS exon 137564 137643 . + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS CDS 138079 138121 1 + 1 transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS exon 138079 138121 . + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS CDS 138355 138465 0.98 + 0 transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS exon 138355 138990 . + . transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS stop_codon 138463 138465 . + 0 transcript_id "g362.t1"; gene_id "g362"; C.avellana_Jefferson_00016 AUGUSTUS tts 138990 138990 . + . transcript_id "g362.t1"; gene_id "g362"; # protein sequence = [MLCGGKDIGCCCDHDNVLLIIVPFWQVVSYQDSRGRGVVGKGCKSALIKCVLEANFIEPTHNKQDFERTSLFQKLEAR # LKEMTWEYWDYHCGLIGYQPKKIPRAPVTPQVSSRSMPQSGKQLVMSKKSSPAISGTEAALGRAEQSISKSPSISELGLRAKRKEHGDIIEVQKAKWQ # AVELGNANNNGHYQDIQPPDATGNQPKDQEAVNLLQENRKLRAKCLEHEKREEELNLQVTQLKIEIEEVQHEYDRMLGELDSLSTVKDERNVLI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/8 # CDS introns: 0/7 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g362 ### # # ----- prediction on sequence number 17 (length = 145551, name = C.avellana_Jefferson_00017) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 17 on both strands # start gene g363 C.avellana_Jefferson_00017 AUGUSTUS gene 7246 12309 0.02 + . g363 C.avellana_Jefferson_00017 AUGUSTUS transcript 7246 12309 0.02 + . g363.t1 C.avellana_Jefferson_00017 AUGUSTUS tss 7246 7246 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS exon 7246 7392 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 7366 7368 . + 0 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS intron 7393 7481 0.58 + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS intron 7607 7684 0.6 + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS intron 7793 8792 0.63 + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS intron 8867 9025 0.63 + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS intron 9202 9882 0.92 + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS intron 9979 11019 0.58 + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS intron 11236 11375 0.46 + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS intron 11430 11830 0.53 + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS intron 11966 12035 0.95 + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS CDS 7366 7392 0.58 + 0 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS CDS 7482 7606 0.6 + 0 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS exon 7482 7606 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS CDS 7685 7792 0.62 + 1 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS exon 7685 7792 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS CDS 8793 8866 0.63 + 1 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS exon 8793 8866 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS CDS 9026 9201 0.63 + 2 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS exon 9026 9201 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS CDS 9883 9978 0.92 + 0 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS exon 9883 9978 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS CDS 11020 11235 0.54 + 0 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS exon 11020 11235 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS CDS 11376 11429 0.51 + 0 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS exon 11376 11429 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS CDS 11831 11965 0.95 + 0 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS exon 11831 11965 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS CDS 12036 12113 0.95 + 0 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS exon 12036 12309 . + . transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 12111 12113 . + 0 transcript_id "g363.t1"; gene_id "g363"; C.avellana_Jefferson_00017 AUGUSTUS tts 12309 12309 . + . transcript_id "g363.t1"; gene_id "g363"; # protein sequence = [MQISDAKSYGEQEQTGRDNVNVSTGGINVWEIDTSLLKYEKKIASVSFCDLYKGTFCNQDVAIKVLRAEHLNKNMQRE # FAQEANIMRNIRHKNVIQFIGACTSPPGLCLVTEYMSGGSMYDFLHKQKSVLAPPSLIRAAIDVSEGMNYLHQNNIIHRDLKAANLLIDGNGVVKVAD # FGVARMQAQSGGMTAETGTYRWMAPEVCLCIWKKEIMLHGLIDDNDDYYVPLAFGSFPSCLTCLFVVDAWKLIEHKAYDHKVDVFSFGVLLWELLTRK # LPYEHLTPLQAAVGVVQKGLRPTIPANTHPKLVELLERCWQQDPSLRPEFSEIIEILEHMAEMVEDETMHRQKRKSSRRVSAFGQSSH] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/10 # CDS introns: 0/9 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g363 ### # start gene g364 C.avellana_Jefferson_00017 AUGUSTUS gene 13246 16977 0.1 + . g364 C.avellana_Jefferson_00017 AUGUSTUS transcript 13246 16977 0.1 + . g364.t1 C.avellana_Jefferson_00017 AUGUSTUS tss 13246 13246 . + . transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS exon 13246 14765 . + . transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 13375 13377 . + 0 transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS intron 14766 14966 0.51 + . transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS intron 15091 15172 0.96 + . transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS intron 15467 15548 1 + . transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS intron 15752 16606 1 + . transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS CDS 13375 14765 0.6 + 0 transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS CDS 14967 15090 0.51 + 1 transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS exon 14967 15090 . + . transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS CDS 15173 15466 0.96 + 0 transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS exon 15173 15466 . + . transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS CDS 15549 15751 1 + 0 transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS exon 15549 15751 . + . transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS CDS 16607 16895 1 + 1 transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS exon 16607 16977 . + . transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 16893 16895 . + 0 transcript_id "g364.t1"; gene_id "g364"; C.avellana_Jefferson_00017 AUGUSTUS tts 16977 16977 . + . transcript_id "g364.t1"; gene_id "g364"; # protein sequence = [MAQREGEVVLKVDDSNGCSKETIEVNKISSEGRCSDYQASSETFTAARSDSVRRRNKNLSDQENRQRSSSSGGGEVLR # CSSNASFRRESRDSWRSVISNTKSRLIDPPEEPCQSSERAVNSGRVIEEKEDKDNEDPDIEDIPEEYKRLKFSSLTLLQWVSLVLIIAALVCSLWVPI # IKRQTVWDLPLWKWEIMVLALICGRLVSGWGIRVVVFFIERNFLLRKRVLYFVYGLRKSVQNCLWLGLVLLVWHIIFNDKVKKETNRKILPHVNKVFV # CFLVGTLIWLLKTLLVKVLASNFHVNTFFERIREALFSQYVIETLSGRPKRHGVEEEEAMAVVHEFEKAGVTLPGDLGATLLPRSGRVIGSGELQSPA # VGKNARFSRLISKRQDEEIPVDHLHKLNLKNISAWNMRRMVNIIQHGALSTLDEQILNSNIEDEALLQIRSECQAKEAAKRIFQNVAKPGSQYIYLQD # VMCFMSKDKASKTMSLFGIAKENQGISKSSLKDWMVNAFRERRALALSLNDTKTAVDELHTLLNVLVAILILIIWLIILGVPISHFLVFLSSQLLLVV # FIFGNTCKTVFEAIIFLFVMHPFDVGDRCEVEGVQMVVEEMNILTTVFLRYDNQKIIYPNSILATKPIGNYYRSPDMGDAIDFCIHISTPVEKVAMMK # ERITRYIESKNEHWQPAPMVVMRDVIDMNKVMVSVWVTHKMNYQDMGERWSRRALLIEEMIKLFRELDIEYRMLPLDVNIRNMPPPISNRLPSNWTTC # AG] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g364 ### # start gene g365 C.avellana_Jefferson_00017 AUGUSTUS gene 17886 18887 0.06 + . g365 C.avellana_Jefferson_00017 AUGUSTUS transcript 17886 18887 0.06 + . g365.t1 C.avellana_Jefferson_00017 AUGUSTUS tss 17886 17886 . + . transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS exon 17886 18113 . + . transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 17961 17963 . + 0 transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS intron 18114 18201 1 + . transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS intron 18251 18359 1 + . transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS CDS 17961 18113 0.46 + 0 transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS CDS 18202 18250 1 + 0 transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS exon 18202 18250 . + . transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS CDS 18360 18820 1 + 2 transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS exon 18360 18887 . + . transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 18818 18820 . + 0 transcript_id "g365.t1"; gene_id "g365"; C.avellana_Jefferson_00017 AUGUSTUS tts 18887 18887 . + . transcript_id "g365.t1"; gene_id "g365"; # protein sequence = [MATPVKVYGPAMSTAVSRVLACLLEKNVDFQLISVNMAKGEHKKPEYLKIQPFGQVPAFEDEDISLFESRSICRYICE # KYADQGNKGLYGTNPLAKASIDQWLEAEGQSFSPPSSALVFQLAFAPRMKIKQDQVAIKQNEEKLSKVLDVYEKRLGETQFLAGDEFSLADLSHLPNA # QYLVNATDRGELFTSRENVGRWWDEISSRDSWKKVVGMQQQKSA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g365 ### # start gene g366 C.avellana_Jefferson_00017 AUGUSTUS gene 20347 24921 0.1 - . g366 C.avellana_Jefferson_00017 AUGUSTUS transcript 20347 24921 0.1 - . g366.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 20347 20347 . - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS exon 20347 20695 . - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 20597 20599 . - 0 transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS intron 20696 20909 0.91 - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS intron 21293 22905 0.86 - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS intron 23005 23255 0.9 - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS intron 23419 23668 0.87 - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS intron 23748 24180 1 - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS intron 24272 24512 0.93 - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS CDS 20597 20695 0.91 - 0 transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS CDS 20910 21292 0.92 - 2 transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS exon 20910 21292 . - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS CDS 22906 23004 0.9 - 2 transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS exon 22906 23004 . - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS CDS 23256 23418 0.95 - 0 transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS exon 23256 23418 . - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS CDS 23669 23747 0.94 - 1 transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS exon 23669 23747 . - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS CDS 24181 24271 1 - 2 transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS exon 24181 24271 . - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS CDS 24513 24693 0.86 - 0 transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS exon 24513 24921 . - . transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 24691 24693 . - 0 transcript_id "g366.t1"; gene_id "g366"; C.avellana_Jefferson_00017 AUGUSTUS tss 24921 24921 . - . transcript_id "g366.t1"; gene_id "g366"; # protein sequence = [MYSKDTLQTLYQNKKPKCMSTFGEKKKEKGRVKITGHTASEMSGFERHEKRSDTEVEVEACSSSIFPSRFSGDREKNV # SVWEQQELEWGGGIPVIGGKELDLHVLYVEVTKRGGYEKVVAEKKWREVGNIFRFSPTTTSASFVLRKHYFSLLYHYEQVYFFKLQGPVFTPTVSFPA # SNPSWRPELAIVEYSPKTTTDYPEPLVEGPSCVSAIGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQPDSSTSVPESNSAIIPYTHKPPHHSGRRRRR # RKSKRRGDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWSNLSPEERMVYQNIGLKDKERYKRELKEYKEKLKLSQAINY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g366 ### # start gene g367 C.avellana_Jefferson_00017 AUGUSTUS gene 35606 36597 0.12 + . g367 C.avellana_Jefferson_00017 AUGUSTUS transcript 35606 36597 0.12 + . g367.t1 C.avellana_Jefferson_00017 AUGUSTUS tss 35606 35606 . + . transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS exon 35606 35794 . + . transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 35665 35667 . + 0 transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS intron 35795 35889 0.98 + . transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS intron 36155 36261 1 + . transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS CDS 35665 35794 1 + 0 transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS CDS 35890 36154 0.98 + 2 transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS exon 35890 36154 . + . transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS CDS 36262 36481 1 + 1 transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS exon 36262 36597 . + . transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 36479 36481 . + 0 transcript_id "g367.t1"; gene_id "g367"; C.avellana_Jefferson_00017 AUGUSTUS tts 36597 36597 . + . transcript_id "g367.t1"; gene_id "g367"; # protein sequence = [MASPSTLSLSDQQHLIEKLQVFKIQGRDKRGRKVLRVIGNLFPARHVSCEALKTYLEEKIFVNLGEKPFSVVYVHTGV # RRTDNFPGISTLRSIYEAIPINVRDHLEAVYFVHPGLQARLFLATFGRLIFSGGLYWKLKYVNRLEFLWEHVRRKEIEIPEFVCDHDEELEYRPMMDY # GMESDHPRVPGPPSVDSPVSMYSMRCIA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g367 ### # start gene g368 C.avellana_Jefferson_00017 AUGUSTUS gene 38692 40041 0.5 - . g368 C.avellana_Jefferson_00017 AUGUSTUS transcript 38692 40041 0.5 - . g368.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 38692 38692 . - . transcript_id "g368.t1"; gene_id "g368"; C.avellana_Jefferson_00017 AUGUSTUS exon 38692 40041 . - . transcript_id "g368.t1"; gene_id "g368"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 38782 38784 . - 0 transcript_id "g368.t1"; gene_id "g368"; C.avellana_Jefferson_00017 AUGUSTUS CDS 38782 39948 1 - 0 transcript_id "g368.t1"; gene_id "g368"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 39946 39948 . - 0 transcript_id "g368.t1"; gene_id "g368"; C.avellana_Jefferson_00017 AUGUSTUS tss 40041 40041 . - . transcript_id "g368.t1"; gene_id "g368"; # protein sequence = [MAVDWTQLPQELLISIADNLKIYADYLRFCAVCHSWRSSVPNTPRHLPPQLPWLMLLDYSDESHGSSDRVFFDPCARK # IRHLEVPEALSYDTRFCGSSHGWVVFLDYSDESRAVLLLNPLTQASLHLPPFSAYPKAQSFNYSEVDAFQFTFPQTQTLRKRLHLYIKKVVFSSAPLG # NNNFIALAICCGVYANVLAYCKKGDETWTLIPRTMFSFADVVYYNGLFYGVDYHGVIAVCDINGASPIVSIIRPPLLFHKRVGAVMLYLVNSGDDELL # LARRYVSRKFYDNGDLESYNTVWFEVFKMNWSEQRWDRVTNLGDRMLFIGSKSSVSFLASGFRGCLGNCIYFTEDDEPFPSYYFRIFKLSGGSFETCW # LINPYGPSIWVTPNPC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g368 ### # start gene g369 C.avellana_Jefferson_00017 AUGUSTUS gene 42977 44631 0.07 - . g369 C.avellana_Jefferson_00017 AUGUSTUS transcript 42977 44631 0.07 - . g369.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 42977 42977 . - . transcript_id "g369.t1"; gene_id "g369"; C.avellana_Jefferson_00017 AUGUSTUS exon 42977 44631 . - . transcript_id "g369.t1"; gene_id "g369"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 43118 43120 . - 0 transcript_id "g369.t1"; gene_id "g369"; C.avellana_Jefferson_00017 AUGUSTUS CDS 43118 44290 1 - 0 transcript_id "g369.t1"; gene_id "g369"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 44288 44290 . - 0 transcript_id "g369.t1"; gene_id "g369"; C.avellana_Jefferson_00017 AUGUSTUS tss 44631 44631 . - . transcript_id "g369.t1"; gene_id "g369"; # protein sequence = [MVVDWMQLPQELLKSISDSIKIYADYIHFRAVCHSVRSSVPNTPRHLPPQLPWLMLPNAQSDQSDPAFLDLQSAGKLH # HLEIPEDVSHHSFFCGSSHGWLVLLFQCPGVLLFNPLTQASLELPPFSAPSNEQSFNFLDVDINDPLGEMYMHTFRGLIVTSVRKVVFSSSPLSNNFI # ALAIISGCDILAYCKKGDLTWTLIPRTMFCCEDVIYFNDLFYVVDKHGALAVCDVNGASPIVSFIKPPLLMGGDTHYLVNSGDDELLLVTRYVDMQYG # DVDTNEVVSYKTLRFEVFRMNWGEPQWETVTSLGDRMLFIGENSSVSFLASDFRGCSGNCIYFTDDSDFKYYRVHGDYDLGIFKLLDGSIEKLPSCQR # NPDSKNCWPPTWVTPNPC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g369 ### # start gene g370 C.avellana_Jefferson_00017 AUGUSTUS gene 45571 48371 0.06 - . g370 C.avellana_Jefferson_00017 AUGUSTUS transcript 45571 48371 0.06 - . g370.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 45571 45571 . - . transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS exon 45571 46178 . - . transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 45910 45912 . - 0 transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS intron 46179 46272 0.82 - . transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS intron 46334 46767 0.66 - . transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS intron 46873 46960 0.54 - . transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS intron 47034 47974 0.68 - . transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS CDS 45910 46178 0.82 - 2 transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS CDS 46273 46333 0.86 - 0 transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS exon 46273 46333 . - . transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS CDS 46768 46872 0.54 - 0 transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS exon 46768 46872 . - . transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS CDS 46961 47033 0.72 - 1 transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS exon 46961 47033 . - . transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS CDS 47975 48249 0.86 - 0 transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS exon 47975 48371 . - . transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 48247 48249 . - 0 transcript_id "g370.t1"; gene_id "g370"; C.avellana_Jefferson_00017 AUGUSTUS tss 48371 48371 . - . transcript_id "g370.t1"; gene_id "g370"; # protein sequence = [MAHASPLRIPLQSHRSFYDLSTDKTYHLVLPETSFPDLHIDSFNGWLIIFDNSSAIFLFNPITRVKFHLPSLSSFCNE # DIAGIIPRYIAKNHRNAKNPLAVVDYIEDLYAYYRKMELKNLSWISTASCNAKNPLAVVDYIEDLCAYYRKMEIKYILHMVYFGDFMGQVVTGRCGGC # GGGRDLGDRLLFVGENSSVWLSAVDYGGGLLIPRNISRNDSRYISSLQKEESEGRWNLTRVIGLRRKMTEELSKMTSQPLKESM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/5 # CDS introns: 0/4 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g370 ### # start gene g371 C.avellana_Jefferson_00017 AUGUSTUS gene 51858 53371 0.09 - . g371 C.avellana_Jefferson_00017 AUGUSTUS transcript 51858 53371 0.09 - . g371.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 51858 51858 . - . transcript_id "g371.t1"; gene_id "g371"; C.avellana_Jefferson_00017 AUGUSTUS exon 51858 53371 . - . transcript_id "g371.t1"; gene_id "g371"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 52108 52110 . - 0 transcript_id "g371.t1"; gene_id "g371"; C.avellana_Jefferson_00017 AUGUSTUS CDS 52108 53331 1 - 0 transcript_id "g371.t1"; gene_id "g371"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 53329 53331 . - 0 transcript_id "g371.t1"; gene_id "g371"; C.avellana_Jefferson_00017 AUGUSTUS tss 53371 53371 . - . transcript_id "g371.t1"; gene_id "g371"; # protein sequence = [MKKIAVDWTQLPRELLEPISKKLTVYRDYVRCRAVCLMWRRSIPRVPHHLPTQLPWLILPRSRSQPRCQLRFYDLSTD # KTHHFELPEASNSELRICSSNGWLVILEDSPVITLLNPLTRAKFYLPPLTSFPNVLSFDYSKVREEYVIEDVSCDVFSTYRQSLREMRDEFIKKIVLS # SYPLNNNFVALAILNDVGLLAYYKNGDLSWNFLPAVDILFCDATYYKGQFYAVGDDGTLAVCDINGESSTVSDNISPRAKDFECHKVYLVNSEDKELL # MVVRHLNDNFDGSYETLRFDVFKLNWSEPSWERVENLGDRLLFIGGNSSVALSGYDVRSCLQNLRYLSPCDDYGQCLGNCIYFTDDLCQCHCTANEFS # CYDVGDRGIFKLWDESIIPLPCREEARFICTLDCT] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g371 ### # start gene g372 C.avellana_Jefferson_00017 AUGUSTUS gene 57750 59521 0.07 - . g372 C.avellana_Jefferson_00017 AUGUSTUS transcript 57750 59521 0.07 - . g372.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 57750 57750 . - . transcript_id "g372.t1"; gene_id "g372"; C.avellana_Jefferson_00017 AUGUSTUS exon 57750 59521 . - . transcript_id "g372.t1"; gene_id "g372"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 58252 58254 . - 0 transcript_id "g372.t1"; gene_id "g372"; C.avellana_Jefferson_00017 AUGUSTUS CDS 58252 59463 0.98 - 0 transcript_id "g372.t1"; gene_id "g372"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 59461 59463 . - 0 transcript_id "g372.t1"; gene_id "g372"; C.avellana_Jefferson_00017 AUGUSTUS tss 59521 59521 . - . transcript_id "g372.t1"; gene_id "g372"; # protein sequence = [MAVDWTQLPRELLESIAGKLTIYADYLRFRAVCSSWRSSVLNIPRNLPPQLPWLMLPQVQTNPFHCAFFDLSTRKLHN # LDVLEVTSQGTHCCGSSHGWLIVLDESPAVLLLNPLTRARLHLPPLSTFPNVVSFNYSEAGSEYALRDVSGEIYRLSLREMRDSFIKKVVLSSAPLKN # KNFIALAILHRFNILVYCKSGDQSWSFVHVARFPWEDVIYYNDLFYTVDKNGAIAVCDLNGASPTVSVIRPPLQLGGGLQYLVNSGDDELLLVTRYVV # HVDLQRDDTDPYVSCVFYCYKTVRFEVFRMNWSEPRWERVTSLGDRMLFIGENTSISFLAYDFRGCLGNCIYFTDDCEFYDGIYDCFIGDHDLGIFKL # WDGSVEPLPFYQRNPHSRSYWAPIWVTPNPC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g372 ### # start gene g373 C.avellana_Jefferson_00017 AUGUSTUS gene 60816 61446 0.28 + . g373 C.avellana_Jefferson_00017 AUGUSTUS transcript 60816 61446 0.28 + . g373.t1 C.avellana_Jefferson_00017 AUGUSTUS tss 60816 60816 . + . transcript_id "g373.t1"; gene_id "g373"; C.avellana_Jefferson_00017 AUGUSTUS exon 60816 61009 . + . transcript_id "g373.t1"; gene_id "g373"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 60862 60864 . + 0 transcript_id "g373.t1"; gene_id "g373"; C.avellana_Jefferson_00017 AUGUSTUS intron 61010 61172 0.98 + . transcript_id "g373.t1"; gene_id "g373"; C.avellana_Jefferson_00017 AUGUSTUS CDS 60862 61009 0.98 + 0 transcript_id "g373.t1"; gene_id "g373"; C.avellana_Jefferson_00017 AUGUSTUS CDS 61173 61261 1 + 2 transcript_id "g373.t1"; gene_id "g373"; C.avellana_Jefferson_00017 AUGUSTUS exon 61173 61446 . + . transcript_id "g373.t1"; gene_id "g373"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 61259 61261 . + 0 transcript_id "g373.t1"; gene_id "g373"; C.avellana_Jefferson_00017 AUGUSTUS tts 61446 61446 . + . transcript_id "g373.t1"; gene_id "g373"; # protein sequence = [MPVGFLEANLDSAVRNSFSVATTVISDDNGKIRAACTKRFNSTEVNYGEGSFPRWEAIKIPRQANMRAHIAAKWAASP] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g373 ### # start gene g374 C.avellana_Jefferson_00017 AUGUSTUS gene 66278 67721 0.04 - . g374 C.avellana_Jefferson_00017 AUGUSTUS transcript 66278 67721 0.04 - . g374.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 66278 66278 . - . transcript_id "g374.t1"; gene_id "g374"; C.avellana_Jefferson_00017 AUGUSTUS exon 66278 67721 . - . transcript_id "g374.t1"; gene_id "g374"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 66500 66502 . - 0 transcript_id "g374.t1"; gene_id "g374"; C.avellana_Jefferson_00017 AUGUSTUS CDS 66500 67690 1 - 0 transcript_id "g374.t1"; gene_id "g374"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 67688 67690 . - 0 transcript_id "g374.t1"; gene_id "g374"; C.avellana_Jefferson_00017 AUGUSTUS tss 67721 67721 . - . transcript_id "g374.t1"; gene_id "g374"; # protein sequence = [MAVDWTQLPRELLESISGKLTIYADYLRFRAVCDSWRSSVLNTPRNLPPQLPWLMLPQVQSNPSHRAFFDLSTRKLHN # LELLEATSHSKRCCGSSHGWLIVLDDSPAVLLLNPLTRSRLHLPPLSAFPNVVSFNYSEVGKEYALRGVSGEIYRRSLREMRNSFIKKVXXXXSSAPL # KNKNFIALAILNHSNILVYCKNGDQSWSFIHVARFFCEDVIYYNDLFYAVDKNGAIAVCDVNGSSPTVSVIRPPLQLGGDMQYLVNSGDDELLLVTRY # VDLQYDDTDPYVPSEFYKTVGFEVFRMNWGEPRWERVTSLGDRMFFIGENMSISFLAYDFRACLGNCIYFTDDCEFYDGAFGDYDLGIFKLWDGSIEP # LPCYQRNPHSQTHWPPIWVTPNPC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g374 ### # start gene g375 C.avellana_Jefferson_00017 AUGUSTUS gene 68628 70031 0.07 - . g375 C.avellana_Jefferson_00017 AUGUSTUS transcript 68628 70031 0.07 - . g375.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 68628 68628 . - . transcript_id "g375.t1"; gene_id "g375"; C.avellana_Jefferson_00017 AUGUSTUS exon 68628 70031 . - . transcript_id "g375.t1"; gene_id "g375"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 68765 68767 . - 0 transcript_id "g375.t1"; gene_id "g375"; C.avellana_Jefferson_00017 AUGUSTUS CDS 68765 70003 1 - 0 transcript_id "g375.t1"; gene_id "g375"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 70001 70003 . - 0 transcript_id "g375.t1"; gene_id "g375"; C.avellana_Jefferson_00017 AUGUSTUS tss 70031 70031 . - . transcript_id "g375.t1"; gene_id "g375"; # protein sequence = [MAVDWTQLPGDILQSISKKITVSGDYVKFRAVCPEWRSSLPKFPRHLLRQFPWLMIPFSQSQSHCSFYDLSTDVTHVL # ELPEAARPDLRICSSNGWLVIFDDSPTILLLDPLTGAKLHLPPLSSFPNVVSFDRSKVGKEYAILGDSGDIYRLSLRQMRDLFIKKIVLSSGPANNDN # MVNALAILGKSNDLACYKNGDQSWTFLDNFCLSWCDGIYYKEQFYVVSRDGTIAVCDVNCEMPIASLIYAFHLFSVISKMHLVISGDDELLLILRNFS # IDGKRPDNKLYLKTTGFDVYRMNWGRQPYWDRVVNLGRRLLFIGEYSSVSLSAYDVRGCVRNPRFSSPYYGQCLGNCIYFTDDRFVYYGDGTVYVLDR # GIYQLRNKKIIAFPGRARDPHSIWFIPSTKDENLIADKKI] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g375 ### # start gene g376 C.avellana_Jefferson_00017 AUGUSTUS gene 70551 72111 0.11 - . g376 C.avellana_Jefferson_00017 AUGUSTUS transcript 70551 72111 0.11 - . g376.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 70551 70551 . - . transcript_id "g376.t1"; gene_id "g376"; C.avellana_Jefferson_00017 AUGUSTUS exon 70551 71667 . - . transcript_id "g376.t1"; gene_id "g376"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 71173 71175 . - 0 transcript_id "g376.t1"; gene_id "g376"; C.avellana_Jefferson_00017 AUGUSTUS intron 71668 71756 0.93 - . transcript_id "g376.t1"; gene_id "g376"; C.avellana_Jefferson_00017 AUGUSTUS CDS 71173 71667 0.94 - 0 transcript_id "g376.t1"; gene_id "g376"; C.avellana_Jefferson_00017 AUGUSTUS CDS 71757 72065 0.93 - 0 transcript_id "g376.t1"; gene_id "g376"; C.avellana_Jefferson_00017 AUGUSTUS exon 71757 72111 . - . transcript_id "g376.t1"; gene_id "g376"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 72063 72065 . - 0 transcript_id "g376.t1"; gene_id "g376"; C.avellana_Jefferson_00017 AUGUSTUS tss 72111 72111 . - . transcript_id "g376.t1"; gene_id "g376"; # protein sequence = [MRDSFIKKLVLPSGPVNNDNFVAMAILSKTGDLAYCKKGDQSWTLISDVGLSCYDLTYYKEQFYAVDGEGAIAVCDVN # GPSPSVSDLSVVKPPTEHLFAVLCLDGWVQGFQNELERAXXXXDDELLLVARYLGPEFEYYELDEPPEMYFRTDGFRVFRMNWSGPQWEEVKSLGDWM # LFVGKNSAVSLSAYDVRRCLRNSEYLNPASFYGKFLEDCIYYSDDYREPDYDGAYGRDTGIYRLWDEKTFSLPRPYFAGTPYSLWVTPNPA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g376 ### # start gene g377 C.avellana_Jefferson_00017 AUGUSTUS gene 73964 76031 0.12 - . g377 C.avellana_Jefferson_00017 AUGUSTUS transcript 73964 76031 0.12 - . g377.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 73964 73964 . - . transcript_id "g377.t1"; gene_id "g377"; C.avellana_Jefferson_00017 AUGUSTUS exon 73964 74476 . - . transcript_id "g377.t1"; gene_id "g377"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 74167 74169 . - 0 transcript_id "g377.t1"; gene_id "g377"; C.avellana_Jefferson_00017 AUGUSTUS intron 74477 74567 1 - . transcript_id "g377.t1"; gene_id "g377"; C.avellana_Jefferson_00017 AUGUSTUS CDS 74167 74476 1 - 1 transcript_id "g377.t1"; gene_id "g377"; C.avellana_Jefferson_00017 AUGUSTUS CDS 74568 75889 0.74 - 0 transcript_id "g377.t1"; gene_id "g377"; C.avellana_Jefferson_00017 AUGUSTUS exon 74568 76031 . - . transcript_id "g377.t1"; gene_id "g377"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 75887 75889 . - 0 transcript_id "g377.t1"; gene_id "g377"; C.avellana_Jefferson_00017 AUGUSTUS tss 76031 76031 . - . transcript_id "g377.t1"; gene_id "g377"; # protein sequence = [MKMESPDIKTTRSPPPPQEPEPEPKKLKMSTTTTSDDEDPSAATTGPGTVKKQRYKRRKIAILFAYCGVGYQGMQKNP # GAKTIESDLEEALYLSGAVPEQDRNNSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVERLNSNLSSQIRIFGYKRVTGSFNAKKFCDRRRYVYL # IPVFALDPSSHRDRESVLASLGSGNALVKCLECSERGRKVVGIMGKRNFECKAVSSDSGISSNSGDALQXXXXLMGKRNFEFKAVSSDSGISSNSGDA # LQESNVKEENTVYLENAGNEKLMSESMEEPKVVDDNRPSEIAVETVVAAPNEVTDEKVNGEEVAKGSGFCYGEKEKERFNRILKHYVGTHNFHNFTTR # TKAEDPAAHRFIVSFEANTTVTVDGIEFVKCEVVGQSFMLHQIRKMIGVAVAIMRNCTPEALIEKALQKDVNINVPTAPEVGLYLDECFFTSYNKKWK # DSHEEVSIKAYEEEAEEFKMKQIYSHIASTEHKEGAVALWLHSLNHRNYPDLRVASDEDPNNEKSDEMKNMAE] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/2 # CDS introns: 0/1 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g377 ### # start gene g378 C.avellana_Jefferson_00017 AUGUSTUS gene 77332 79701 0.17 - . g378 C.avellana_Jefferson_00017 AUGUSTUS transcript 77332 79701 0.17 - . g378.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 77332 77332 . - . transcript_id "g378.t1"; gene_id "g378"; C.avellana_Jefferson_00017 AUGUSTUS exon 77332 79701 . - . transcript_id "g378.t1"; gene_id "g378"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 77566 77568 . - 0 transcript_id "g378.t1"; gene_id "g378"; C.avellana_Jefferson_00017 AUGUSTUS CDS 77566 79680 1 - 0 transcript_id "g378.t1"; gene_id "g378"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 79678 79680 . - 0 transcript_id "g378.t1"; gene_id "g378"; C.avellana_Jefferson_00017 AUGUSTUS tss 79701 79701 . - . transcript_id "g378.t1"; gene_id "g378"; # protein sequence = [MSVALSSQYRSFFTALSEYTHQKDLRKGKALHAQIIKTASSTCVYLANSLINFYAKCGHLVKARLVFEKTSDKDVVSW # NCLINGYSQQGPTGSSFVMELFRRMRAENTVPEARTFSGVFTAASSTSDIFGGRQVHALAIKTASLSDVFVGSSLLNLYCKAGLLFEARKVFDKMPER # NSVSWATIISGYAMQRMTGDALELFELMRQEEEVENEFVLSSVLSALASPEFVNIGQQIHCLASRGGLLSFVSVENALVTMYAKCGSLDDALKTFEES # SDKNSITWSAMITGFAQSGDSHKALNLFSHMHLSGIKPSEFTFVGVINACSDIGTVVEGKQMHGFSLKMGYESQIYIMTALVDMYAKCGSIADARKGF # DYLQDPDIVLWTSMIGGYVQNGENEGALNLYCRMQMEGIMPNELTMASVLKACSNLAALEQGRQIHAGIVKHGFSLEVPIGSALLTMYAKCGSLEDGG # FVFWRMPMRDVVSWNAMISGLSQNGRGHEALELFEEMQLEGTKPDYVTFVNILSACSHMGSVEGGWVYFKMMFDKFGLVPRVEHYACMVDILSRAGKL # NEAKEFIESATVDHGMCLWRILLAACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYSSLGKWEDVERVRRMMKLRGVNKDPGCSWIDLQSITHV # FVAGEQMHPQIGEIRAELRMLTKQMKDEGYEPTSELTS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g378 ### # start gene g379 C.avellana_Jefferson_00017 AUGUSTUS gene 81216 81704 0.15 + . g379 C.avellana_Jefferson_00017 AUGUSTUS transcript 81216 81704 0.15 + . g379.t1 C.avellana_Jefferson_00017 AUGUSTUS tss 81216 81216 . + . transcript_id "g379.t1"; gene_id "g379"; C.avellana_Jefferson_00017 AUGUSTUS exon 81216 81704 . + . transcript_id "g379.t1"; gene_id "g379"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 81279 81281 . + 0 transcript_id "g379.t1"; gene_id "g379"; C.avellana_Jefferson_00017 AUGUSTUS CDS 81279 81599 0.59 + 0 transcript_id "g379.t1"; gene_id "g379"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 81597 81599 . + 0 transcript_id "g379.t1"; gene_id "g379"; C.avellana_Jefferson_00017 AUGUSTUS tts 81704 81704 . + . transcript_id "g379.t1"; gene_id "g379"; # protein sequence = [MLNRMSHVRIHHAQCPRRFQPLESHPARALGRCLMLKLWAHRCALDHAHHLTPPRRDRHAISTDTQNQTNWHETLDRN # ERPETPTQRSTLTVEYEHSLHRGIEMER] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g379 ### # start gene g380 C.avellana_Jefferson_00017 AUGUSTUS gene 84496 89256 0.07 + . g380 C.avellana_Jefferson_00017 AUGUSTUS transcript 84496 89256 0.07 + . g380.t1 C.avellana_Jefferson_00017 AUGUSTUS tss 84496 84496 . + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS exon 84496 84700 . + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 84547 84549 . + 0 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS intron 84701 84803 0.58 + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS intron 85031 85124 1 + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS intron 85271 85363 0.98 + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS intron 85477 86252 0.91 + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS intron 86342 86576 0.97 + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS intron 86700 87550 0.83 + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS intron 87587 88660 0.82 + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS intron 88760 88839 0.99 + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS CDS 84547 84700 0.58 + 0 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS CDS 84804 85030 0.58 + 2 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS exon 84804 85030 . + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS CDS 85125 85270 0.99 + 0 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS exon 85125 85270 . + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS CDS 85364 85476 0.93 + 1 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS exon 85364 85476 . + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS CDS 86253 86341 0.96 + 2 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS exon 86253 86341 . + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS CDS 86577 86699 0.99 + 0 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS exon 86577 86699 . + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS CDS 87551 87586 0.85 + 0 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS exon 87551 87586 . + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS CDS 88661 88759 0.98 + 0 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS exon 88661 88759 . + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS CDS 88840 89031 1 + 0 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS exon 88840 89256 . + . transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 89029 89031 . + 0 transcript_id "g380.t1"; gene_id "g380"; C.avellana_Jefferson_00017 AUGUSTUS tts 89256 89256 . + . transcript_id "g380.t1"; gene_id "g380"; # protein sequence = [MVTKKHALQAFNWESHKYDWWRNLERKVPDIAKSGFTSAWLPPASHSFSPEGYLPQNLYSLNSSYGSEHLLKTLLQKM # KQYRVRAMADIVINHRVGTSQGHGGMYNRYDGIPLAWDEHAVTSCTGGLGNRSTGDNFHGVPNIDHSQQFVRKDIIAWLQWLRNSVGFQDFRFDFARG # YSAKYVKEYIEGAMPIFSVGEYWDSCNYNGHGLDYNQDSHRQQIINWIDGTGQRSTAFDFTTKGILQEAVKGQFWRLRDPQGKPPGLMGWWSSRAVTF # IDNHDTGSTQAHWPFPSNHIMEGYTYILTHPGIPTVFYDHFYDWGDSMHDQIVKLIDVRKRQDINSRSPISILEAQPNLYSAIIGEKVCMKIGDGSWC # PAGREWTLATCGHRYAVWQK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g380 ### # start gene g381 C.avellana_Jefferson_00017 AUGUSTUS gene 91039 92541 0.08 - . g381 C.avellana_Jefferson_00017 AUGUSTUS transcript 91039 92541 0.08 - . g381.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 91039 91039 . - . transcript_id "g381.t1"; gene_id "g381"; C.avellana_Jefferson_00017 AUGUSTUS exon 91039 91450 . - . transcript_id "g381.t1"; gene_id "g381"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 91233 91235 . - 0 transcript_id "g381.t1"; gene_id "g381"; C.avellana_Jefferson_00017 AUGUSTUS CDS 91233 91448 0.87 - 0 transcript_id "g381.t1"; gene_id "g381"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 91446 91448 . - 0 transcript_id "g381.t1"; gene_id "g381"; C.avellana_Jefferson_00017 AUGUSTUS exon 92449 92541 . - . transcript_id "g381.t1"; gene_id "g381"; C.avellana_Jefferson_00017 AUGUSTUS tss 92541 92541 . - . transcript_id "g381.t1"; gene_id "g381"; # protein sequence = [MIEVMMDGGDQXAWVWPSRPPHGLGVAARPPHGLGVAISLSSAWRRRWDQVAAGGDGCEGCCVSEVWRMKK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g381 ### # start gene g382 C.avellana_Jefferson_00017 AUGUSTUS gene 102172 106971 0.17 - . g382 C.avellana_Jefferson_00017 AUGUSTUS transcript 102172 106971 0.17 - . g382.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 102172 102172 . - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS exon 102172 102345 . - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 102342 102344 . - 0 transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS intron 102346 102467 0.62 - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS intron 102803 103245 0.99 - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS intron 103600 105267 0.99 - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS intron 105807 106089 0.98 - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS intron 106207 106531 0.98 - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS CDS 102342 102345 0.69 - 1 transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS CDS 102468 102802 0.64 - 0 transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS exon 102468 102802 . - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS CDS 103246 103599 1 - 0 transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS exon 103246 103599 . - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS CDS 105268 105806 0.98 - 2 transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS exon 105268 105806 . - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS CDS 106090 106206 1 - 2 transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS exon 106090 106206 . - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS CDS 106532 106823 1 - 0 transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS exon 106532 106971 . - . transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 106821 106823 . - 0 transcript_id "g382.t1"; gene_id "g382"; C.avellana_Jefferson_00017 AUGUSTUS tss 106971 106971 . - . transcript_id "g382.t1"; gene_id "g382"; # protein sequence = [MGSVSSEDDFDRLSERFESYSLSADVSESESSSGFFSRRRYGHECVSSSLTSSPRAGNELDEDSGFPVPVPVMLPVVG # GRHVVIPPKKTDKPETELSEIELMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWKLEPLAPQKKSMWYREMEWLLCVSDFIVELIP # SVQELPGGGTFEVMVNRPRADLYANLPALKKLDAMLLGILDGFQDSEFYYVDRGIIVSDADDTEAYHLSASPLRPSVRQEEKWWLPFPKVPPNGLSQD # IRKKLLHSRECTNQILKAAMAINSSVLAEMEIPIAYLESLPKSGKACLGEILYRYVTAEQFSPESLLDFLDFSSEFTTLDIANRIEAAVHIWRPKYLK # THSLPAKAGKSSWGGKVKGFVGDREKSKYLASRAESLLQNLRLRFPGLPQTALDMSKIQYNKDVGQSILESYSRVMESIAFNIMARIDDLLYVDDAAK # QRAAAAAAEATSLYNQERSGCGLPKQKRISGSPFSIQRSYCASPFTMPACHFSQIDGSPGGRTHHAVKNSRYTPES] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g382 ### # start gene g383 C.avellana_Jefferson_00017 AUGUSTUS gene 111226 116928 0.09 + . g383 C.avellana_Jefferson_00017 AUGUSTUS transcript 111226 116928 0.09 + . g383.t1 C.avellana_Jefferson_00017 AUGUSTUS tss 111226 111226 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 111226 111447 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 111338 111340 . + 0 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 111448 111737 1 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 111958 112049 0.98 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 112251 112371 0.66 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 112443 112805 0.6 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 112969 113873 0.98 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 114468 114606 0.96 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 114988 115092 1 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 115169 115238 0.95 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 115303 115843 0.97 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 115980 116402 0.98 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS intron 116517 116602 1 + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 111338 111447 0.88 + 0 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 111738 111957 1 + 1 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 111738 111957 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 112050 112250 0.96 + 0 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 112050 112250 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 112372 112442 0.6 + 0 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 112372 112442 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 112806 112968 0.67 + 1 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 112806 112968 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 113874 114467 0.98 + 0 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 113874 114467 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 114607 114987 0.96 + 0 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 114607 114987 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 115093 115168 1 + 0 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 115093 115168 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 115239 115302 0.95 + 2 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 115239 115302 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 115844 115979 0.95 + 1 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 115844 115979 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 116403 116516 1 + 0 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 116403 116516 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS CDS 116603 116668 1 + 0 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS exon 116603 116928 . + . transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 116666 116668 . + 0 transcript_id "g383.t1"; gene_id "g383"; C.avellana_Jefferson_00017 AUGUSTUS tts 116928 116928 . + . transcript_id "g383.t1"; gene_id "g383"; # protein sequence = [MGSLGALDEPLQYPVARRDESVVEDYHGVKIADPYRWLEDPDAEEVKEFVQKQVKLTGSVLEKCETREKLREKITKLF # DHPRYDAPFRRGNKYFYFHNTGLQAQNVLYFQDSLDGEPEVLLDPNALSEDGTVSLNTLSVSEDAKYLAYGLSASGSDWVTIKVMRVEDKKVESDTLS # WVKFSSISWTHDSKGFFYSRYPAPKEGENVDAGTETNSNLYHELYYHFLGTDQSEDILCWRDPENAKYMFGASVTDDGKYVLLYIDEGCDPVNKFYYC # DLSELPNGLLGLKGKNDLPPFIKLIDEFDAQYHAVANDDTVFTFLTNKDAPKYKLTRVDLKEPTVWTDVIQEAEKDVLESASAVNGNQMIVSYLSDVK # YVLQIRDLKSGSLLHQLPIDIGTVNGISARRKDNVVFIGFTSFLAPGIIYQCNLESEVPDMKIFREIVVPGFDRSEFHVDQVFVPSKDGTKIPMFIVA # QKNIHLDGSHPCLLYGYGGFNISLTPSFSVGRIVLTRHLGAVFCIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISAAEYLISAGYTQPKKLCIEGGS # NGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTTDYGSSDKEEEFHWIIKYSPLHNVRRPWEKHPDQPSQYPPTMLLTADHDDRVVPLH # SLKLLATMQYVLCTSLEKSPQINPIIGRIECKAGHGAGRPTQKMIDEAADRYGFMAKMLDASWIE] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/12 # CDS introns: 0/11 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g383 ### # start gene g384 C.avellana_Jefferson_00017 AUGUSTUS gene 119952 128741 0.01 - . g384 C.avellana_Jefferson_00017 AUGUSTUS transcript 119952 128741 0.01 - . g384.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 119952 119952 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 119952 120523 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 120419 120421 . - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 120524 120787 0.42 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 120827 120906 0.42 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 120988 121141 0.64 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 121217 121296 0.76 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 121417 121733 0.32 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 121803 123736 0.51 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 123809 124274 0.69 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 124421 125854 0.44 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 126025 126376 0.94 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 126444 126527 0.8 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 126605 126796 0.93 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 127141 127568 0.93 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS intron 127713 128621 0.81 - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 120419 120523 0.54 - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 120788 120826 0.42 - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 120788 120826 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 120907 120987 0.65 - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 120907 120987 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 121142 121216 0.77 - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 121142 121216 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 121297 121416 0.75 - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 121297 121416 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 121734 121802 0.65 - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 121734 121802 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 123737 123808 0.69 - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 123737 123808 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 124275 124420 0.76 - 2 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 124275 124420 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 125855 126024 0.45 - 1 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 125855 126024 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 126377 126443 0.94 - 2 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 126377 126443 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 126528 126604 0.8 - 1 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 126528 126604 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 126797 127140 0.96 - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 126797 127140 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 127569 127712 0.92 - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 127569 127712 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS CDS 128622 128678 0.77 - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS exon 128622 128741 . - . transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 128676 128678 . - 0 transcript_id "g384.t1"; gene_id "g384"; C.avellana_Jefferson_00017 AUGUSTUS tss 128741 128741 . - . transcript_id "g384.t1"; gene_id "g384"; # protein sequence = [MDRDWLQSPIRVAASLTVIVSLDPEPAHVISATVECQDSTGDDIARALHDVLQGLPSHVVKDLVSIGVCCRCIFRLFG # TRDNIYSCSSLSPSILSSVLKEHEDSSRRPTSEELEVEAVLCTLCLGILQFTYCDDKEMVVKKSANDMAVAVSELVKREGYQIDSFSLEVSIPPLILE # NEHLFWTENVLIFMEGSCHYDFPPGNTDICFGCXXXXLEVSIPPLILENEHLFWLYMKSKYGSELWFQGRSLSQCISAKDALKFYLTQPLEALLVSKD # SLPVLKIPRIRKGTGNSADSIDDCVVGDIECSGLADVTIERSFDGLQDNGSSQCFKFPQEKVNEACHLVLLCHRTPIYFGGRYMKYSRNVSQTRWIID # DERMGEASVEVRMLGSGRPFLVEIQNARHIPSEALVKEIEIKINDLENKLVGVKNLKVVGYEGWTLIHEGEAEKQKQYAALVWISRPLEDEDLESISS # LKDTDEDLESISSLKDTEQMKGLVPTGNANMPLSLGNHPVPRAGVSLSRTC] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/14 # CDS introns: 0/13 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g384 ### # start gene g385 C.avellana_Jefferson_00017 AUGUSTUS gene 137826 144161 0.06 - . g385 C.avellana_Jefferson_00017 AUGUSTUS transcript 137826 144161 0.06 - . g385.t1 C.avellana_Jefferson_00017 AUGUSTUS tts 137826 137826 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 137826 138884 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS stop_codon 138738 138740 . - 0 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS intron 138885 139434 1 - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS intron 139751 140635 0.93 - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS intron 141122 141938 0.51 - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS intron 142072 142517 0.94 - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS intron 142590 142905 1 - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS intron 143023 143102 0.51 - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS intron 143157 143245 0.74 - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS intron 143409 143517 0.88 - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS intron 143584 143883 0.76 - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS intron 143941 144055 0.94 - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 138738 138884 1 - 0 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 139435 139750 0.99 - 1 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 139435 139750 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 140636 141121 0.92 - 1 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 140636 141121 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 141939 142071 0.49 - 2 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 141939 142071 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 142518 142589 1 - 2 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 142518 142589 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 142906 143022 0.53 - 2 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 142906 143022 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 143103 143156 0.78 - 2 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 143103 143156 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 143246 143408 0.94 - 0 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 143246 143408 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 143518 143583 0.88 - 0 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 143518 143583 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 143884 143940 0.94 - 0 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 143884 143940 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS CDS 144056 144061 0.99 - 0 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS exon 144056 144161 . - . transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS start_codon 144059 144061 . - 0 transcript_id "g385.t1"; gene_id "g385"; C.avellana_Jefferson_00017 AUGUSTUS tss 144161 144161 . - . transcript_id "g385.t1"; gene_id "g385"; # protein sequence = [MVLDRIFKDDSSEEKGERARMASFIGGMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKV # LVGILAFVLLLDDMACDCHVSVDGTFTSAIYHVYIEYVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGYRMAAECALNALLQKVMDNKE # DPEKFKFDLMKIAMTTLSSKILSQDKEHFAKLAVDAVMRLKVIMRLMFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVAEIE # VAEKEKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVE # LGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKDVDELARKTPGKRSHAIEAFARALVAIPTIIADNAGLDSAELVAQ # LRAEHHKEGCTAGIDVISGSVGDMVQLGISEAFKVKQAVLLSATEAAEMILRVDEIITCAPRKREDRM] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/11 # CDS introns: 0/10 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g385 ### # # ----- prediction on sequence number 18 (length = 145354, name = C.avellana_Jefferson_00018) ----- # # Constraints/Hints: # (none) # Predicted genes for sequence number 18 on both strands # start gene g386 C.avellana_Jefferson_00018 AUGUSTUS gene 5853 8051 0.17 - . g386 C.avellana_Jefferson_00018 AUGUSTUS transcript 5853 8051 0.17 - . g386.t1 C.avellana_Jefferson_00018 AUGUSTUS tts 5853 5853 . - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS exon 5853 6027 . - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS stop_codon 5928 5930 . - 0 transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS intron 6028 6917 0.89 - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS intron 7034 7168 0.81 - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS intron 7211 7497 0.46 - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS intron 7598 7691 0.99 - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS intron 7757 7908 1 - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS CDS 5928 6027 0.89 - 1 transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS CDS 6918 7033 0.88 - 0 transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS exon 6918 7033 . - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS CDS 7169 7210 0.83 - 0 transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS exon 7169 7210 . - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS CDS 7498 7597 0.59 - 1 transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS exon 7498 7597 . - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS CDS 7692 7756 1 - 0 transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS exon 7692 7756 . - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS CDS 7909 7986 0.98 - 0 transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS exon 7909 8051 . - . transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS start_codon 7984 7986 . - 0 transcript_id "g386.t1"; gene_id "g386"; C.avellana_Jefferson_00018 AUGUSTUS tss 8051 8051 . - . transcript_id "g386.t1"; gene_id "g386"; # protein sequence = [MEKILERYERYSYAERQLAAADSEAQGNWTLEFARLKGKVELLQRNHRHYLGDDLESLSLKELQHLEQQLDTALKHVR # TRKEKAIQEQNTILAKKIKENEKTAAQQVDWEQQNQGPNGSTSFLLPQPLPCLNIGGSYQEEAPEVRRNELELTLEPIYSCHLGCFAA] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/6 # CDS introns: 0/5 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g386 ### # start gene g387 C.avellana_Jefferson_00018 AUGUSTUS gene 23010 23661 0.21 - . g387 C.avellana_Jefferson_00018 AUGUSTUS transcript 23010 23661 0.21 - . g387.t1 C.avellana_Jefferson_00018 AUGUSTUS tts 23010 23010 . - . transcript_id "g387.t1"; gene_id "g387"; C.avellana_Jefferson_00018 AUGUSTUS exon 23010 23661 . - . transcript_id "g387.t1"; gene_id "g387"; C.avellana_Jefferson_00018 AUGUSTUS stop_codon 23358 23360 . - 0 transcript_id "g387.t1"; gene_id "g387"; C.avellana_Jefferson_00018 AUGUSTUS CDS 23358 23546 0.58 - 0 transcript_id "g387.t1"; gene_id "g387"; C.avellana_Jefferson_00018 AUGUSTUS start_codon 23544 23546 . - 0 transcript_id "g387.t1"; gene_id "g387"; C.avellana_Jefferson_00018 AUGUSTUS tss 23661 23661 . - . transcript_id "g387.t1"; gene_id "g387"; # protein sequence = [MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVAVIVFSHKGKLFEYATDSR] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g387 ### # start gene g388 C.avellana_Jefferson_00018 AUGUSTUS gene 39066 40405 0.09 + . g388 C.avellana_Jefferson_00018 AUGUSTUS transcript 39066 40405 0.09 + . g388.t1 C.avellana_Jefferson_00018 AUGUSTUS tss 39066 39066 . + . transcript_id "g388.t1"; gene_id "g388"; C.avellana_Jefferson_00018 AUGUSTUS exon 39066 40405 . + . transcript_id "g388.t1"; gene_id "g388"; C.avellana_Jefferson_00018 AUGUSTUS start_codon 39128 39130 . + 0 transcript_id "g388.t1"; gene_id "g388"; C.avellana_Jefferson_00018 AUGUSTUS CDS 39128 40081 1 + 0 transcript_id "g388.t1"; gene_id "g388"; C.avellana_Jefferson_00018 AUGUSTUS stop_codon 40079 40081 . + 0 transcript_id "g388.t1"; gene_id "g388"; C.avellana_Jefferson_00018 AUGUSTUS tts 40405 40405 . + . transcript_id "g388.t1"; gene_id "g388"; # protein sequence = [MSITALSDPDKLYKKSFHRRNDSGELDVFEAARYFSGYNEAAGYNGTGFTQKNLRDEKQGCRVGRMSLDVPMRNSFPQ # QSHGVLEKQMKEKKYKQPSSPGGRLASFLNSLFSQSASKKKKSKSSSQSMKDEEESPGGRRKRRISISHFRSSSTADSKSIYSSSSSGFRTPPPYNAQ # TPTKSYKDFRSYSDHKQVVSNLSKHKVSHNEALDVDRKNKDLHWLDDKFEFSKGFSEKCKKNSCGNVFLEKDRIWVERYPSEEKQFVKFSEVDDGAES # DSSSDLFELQNYDLGYCSSGLPVYETTDMDTIKRGAPISNGAL] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g388 ### # start gene g389 C.avellana_Jefferson_00018 AUGUSTUS gene 51996 58220 0.04 + . g389 C.avellana_Jefferson_00018 AUGUSTUS transcript 51996 58220 0.04 + . g389.t1 C.avellana_Jefferson_00018 AUGUSTUS tss 51996 51996 . + . transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS exon 51996 52175 . + . transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS exon 53267 53973 . + . transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS start_codon 53312 53314 . + 0 transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS intron 53974 55304 0.47 + . transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS intron 55409 57287 0.88 + . transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS CDS 53312 53973 0.48 + 0 transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS CDS 55305 55408 0.88 + 1 transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS exon 55305 55408 . + . transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS CDS 57288 58069 0.87 + 2 transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS exon 57288 58220 . + . transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS stop_codon 58067 58069 . + 0 transcript_id "g389.t1"; gene_id "g389"; C.avellana_Jefferson_00018 AUGUSTUS tts 58220 58220 . + . transcript_id "g389.t1"; gene_id "g389"; # protein sequence = [MMESWSCSSEGKGLLFHDEMELQIDSFARSKKALMEWDNKPTYYFESSGLVSDREAVEGMEVLDLGFSDLVRKPFHGN # QGVEMLSGDVGSGSSKRAVTPTCIVTSNSCFEEMASEAKLSSSPMEANSQDSSLIDLKLGTLADCKDAENIKVLKENPILSSVSPSLPRKRARKASSY # SQTAFCQVHGCNKDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFHLLVEFDDGKRSCRKRLAGHNERRRKPQLDTLSGTRYLDTSFPKRTPYVFQD # IFRAGIICPEKNEQANWSRHTKLEGESIYSPQSAIASTSGHLLPKSFLHLHGIGKHHCSGVPSSGPEDFTFTASTVQELPGASISSCALSLLSAQSQD # LSSHSTGRPMSSPQIMQGRSAHHVLGQTDKPVRVSSVEQYGSNGLYSYGMSSMEVDRIGSIMPSDASHAGDFQVHTNEIFQDSDILNANYFPSTEDGP # TVDWLQLSSHLQRVERQRNSIQVKQENGDSCYFPTFRAVCNQQGV] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/3 # CDS introns: 0/2 # 5'UTR exons and introns: 0/3 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g389 ### # start gene g390 C.avellana_Jefferson_00018 AUGUSTUS gene 69226 80178 0.02 + . g390 C.avellana_Jefferson_00018 AUGUSTUS transcript 69226 80178 0.02 + . g390.t1 C.avellana_Jefferson_00018 AUGUSTUS tss 69226 69226 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 69226 69470 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS start_codon 69366 69368 . + 0 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 69471 70598 0.85 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 70707 70815 0.9 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 70948 71786 0.99 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 72393 72592 0.86 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 72768 72887 0.99 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 73245 73377 1 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 73885 74244 0.76 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 75168 75289 0.99 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 75376 75451 0.88 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 75671 76512 0.94 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 76642 78107 0.65 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 78477 78962 1 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS intron 79079 79875 0.86 + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 69366 69470 0.92 + 0 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 70599 70706 0.91 + 0 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 70599 70706 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 70816 70947 0.99 + 0 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 70816 70947 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 71787 72392 0.99 + 0 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 71787 72392 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 72593 72767 0.86 + 0 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 72593 72767 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 72888 73244 0.99 + 2 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 72888 73244 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 73378 73884 1 + 2 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 73378 73884 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 74245 75167 0.76 + 2 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 74245 75167 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 75290 75375 0.91 + 0 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 75290 75375 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 75452 75670 0.94 + 1 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 75452 75670 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 76513 76641 1 + 1 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 76513 76641 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 78108 78476 0.65 + 1 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 78108 78476 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 78963 79078 0.86 + 1 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 78963 79078 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS CDS 79876 79991 0.54 + 2 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS exon 79876 80178 . + . transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS stop_codon 79989 79991 . + 0 transcript_id "g390.t1"; gene_id "g390"; C.avellana_Jefferson_00018 AUGUSTUS tts 80178 80178 . + . transcript_id "g390.t1"; gene_id "g390"; # protein sequence = [MVKPKDDEKSDGLEITSIGSLYKGPWDKKYWSSSRGKDRYPYPVGYQVVRAHNGGTYKMEIQEGPKGPLFVITSDGHT # GSGQTPDIAWDKFQKKGCPRTKIWHGKRFSCKIDGVEFFGFKNQLVQRLLRELVANVNGTAERSLFSSSSVNGASKTEHDSRCPDACTYPDLLASLAR # PQNTGKRSRKREILSTTSVGGARLKRSRPPDLICDAEAPSLIKGNQRNYTHGCLMPPSTSEKENDIYKHPGALPASGRLVSGTGKEKSHFSAKDEPPL # NHPDFSDHLREEGLPAQEERELDGSENCKSAGVANNLPAEEKLHGNTLNFLQLGRLPDTEVEELNLQNATEDQNGNALVPKDFPDVNAVDLCAPDTLD # LMQDSTSNYAACTQDKSTCGEKEELAAANMIISEVLVTESHPQEEIGISSSNASSEKNDYDSVGQEMAKSMMTFLLPQAIPLLKKASRKKKAMGIPST # IVPCVVQSQWENNEARYSVDVPPPAVTLAESAHMEKEERHIQNTVLDLVGPSFEHANSIVLDSFEDDQCGDLATKLVILSSDIAEADQVSFEKDTCPP # NTWGQLTVQNESSVSHVETSGSKDIFCYNEVHMTLNKKPQEGDTCISESVLACTSPSNNVLPENINAYANLDENPVDVELHSGEKHLNTVPDCTIATD # ASDTNQRGTGDSSKISLKEISINRVVAEPGITSFTQTPNTVYPWKNVRNVDLLARKNNVPLSESIIYRNFGEHLDPETDPATGTFLSTEIHQMDCSDD # KSGQKDLVVVQARLEGQSHGLHKENATMNFESVMNNMVPAISQNQAFAFASRDKDTSDVFEPSVSVLAKSQVHLDEELVGHKNLVDSNSPTSFLNQKT # SFCENNSSSAKGVQDSVDVKLRKMELNNELQNIVELVGCYVHPMPISSLLLSTKGNEIYICVLCGLLMDRDRTLFIYKLPIKEPSVGCPSFVGHTSAM # LPILKNYFGREVEVEGSGLQFAPDGEHLVLLDSIKTPYCREGRIQCQCSTCTSDCSGENAVKIVQVKFGYVSIVVKLKTVESLQCILVCEPNHLVAVG # ESGSLHLWVMNSAWSAQIEEFILPANDCTSPGIMELKRIPKSTSLVVGHHGFGEFSIWDISKRVFLSSFCAQSTSIYQFFPISLFSWKNEDPGFSNSN # VKEHVDGIMAATKMWFSENSENSTFLPSEGEDIAVWLLVSTISDSNAQHNNIPSDCQNHSVGCWRLALLVKNMVILGTALDLRAAAVGASAGHGIIGT # SDGLVYMWELSTGTKLAMLHHFRGGSVSCVATDGSTGGALAVASGDQLLVYLQIMHTQKSS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/14 # CDS introns: 0/13 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g390 ### # start gene g391 C.avellana_Jefferson_00018 AUGUSTUS gene 80605 83281 0.37 - . g391 C.avellana_Jefferson_00018 AUGUSTUS transcript 80605 83281 0.37 - . g391.t1 C.avellana_Jefferson_00018 AUGUSTUS tts 80605 80605 . - . transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS exon 80605 81172 . - . transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS stop_codon 80843 80845 . - 0 transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS intron 81173 81844 1 - . transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS intron 82014 82107 1 - . transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS intron 82359 82882 0.96 - . transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS CDS 80843 81172 1 - 0 transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS CDS 81845 82013 1 - 1 transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS exon 81845 82013 . - . transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS CDS 82108 82358 1 - 0 transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS exon 82108 82358 . - . transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS CDS 82883 83206 0.96 - 0 transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS exon 82883 83281 . - . transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS start_codon 83204 83206 . - 0 transcript_id "g391.t1"; gene_id "g391"; C.avellana_Jefferson_00018 AUGUSTUS tss 83281 83281 . - . transcript_id "g391.t1"; gene_id "g391"; # protein sequence = [MAEPSTKIIPLLKDELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRVLGPKAS # CISFKDSACRCFGFLVSKKKYIFTIDDDCFVAKDPSGKYINALEQHIKNVLTPSTPFFFNTLYDPYREGADFVRGYPFSLRGGAPTAVSHGLWLNIPD # YDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLGLGVKTGLPYIWHSKASNPF # VNLKKEYKGIFWQEELIPFFRSAVLPKECTTVQECYIELSKQVRAKLGQLDPYFNKLADAMLIWIEAWEELNPPADQPIVPAK] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/4 # CDS introns: 0/3 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g391 ### # start gene g392 C.avellana_Jefferson_00018 AUGUSTUS gene 85266 89111 0.31 - . g392 C.avellana_Jefferson_00018 AUGUSTUS transcript 85266 89111 0.31 - . g392.t1 C.avellana_Jefferson_00018 AUGUSTUS tts 85266 85266 . - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS exon 85266 85417 . - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS stop_codon 85330 85332 . - 0 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS intron 85418 85510 1 - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS intron 85636 85745 0.96 - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS intron 85856 86508 0.92 - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS intron 86549 86699 0.92 - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS intron 86787 86905 0.91 - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS intron 87152 87286 1 - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS intron 87437 88424 0.85 - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS intron 88747 88846 1 - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS CDS 85330 85417 1 - 1 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS CDS 85511 85635 0.99 - 0 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS exon 85511 85635 . - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS CDS 85746 85855 0.97 - 2 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS exon 85746 85855 . - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS CDS 86509 86548 0.92 - 0 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS exon 86509 86548 . - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS CDS 86700 86786 0.91 - 0 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS exon 86700 86786 . - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS CDS 86906 87151 0.94 - 0 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS exon 86906 87151 . - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS CDS 87287 87436 0.85 - 0 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS exon 87287 87436 . - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS CDS 88425 88746 0.99 - 1 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS exon 88425 88746 . - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS CDS 88847 89031 1 - 0 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS exon 88847 89111 . - . transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS start_codon 89029 89031 . - 0 transcript_id "g392.t1"; gene_id "g392"; C.avellana_Jefferson_00018 AUGUSTUS tss 89111 89111 . - . transcript_id "g392.t1"; gene_id "g392"; # protein sequence = [MEVLAFSWLVLGFLFCVALAKWNEVRYRGKCLPPGTTGWPLFGETLEFLKQGPFYMDNQRAKYGSLFKTHILGCPTVI # SMDPQLNRYILLNEGKGLVPGYPKSMVDLIGKTNMAAVHGSDHKLVRGSLISLVGPAAIKDQLFPYIDKFISCFIDNWDGKTLDIQQKTMEMAFYITF # RQLVEAEADTLYEPFKAAFDKVVTGTLSLPINIPGTNYHMGLQGRKRIIGMLKQVMAERRASRIPQNDMLAELIGNENTKYELNDEQIFDQVFVLLNS # GYETVSVTTMMAIKYLHDHPKALEECREEHLAIRERKGPGEPIDWNDYKSMRFTRAVILETSRLATVVNGFVIPKGWKMYVYTRELNYDPIIYPEPFT # FDPWRWLQGKGLETHSHFFLFGGGTRLCPGKELGIVQISTFLHYFVTRYRWEQVGECEILRFPRVEVPNGMHLRISKY] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/9 # CDS introns: 0/8 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g392 ### # start gene g393 C.avellana_Jefferson_00018 AUGUSTUS gene 90856 93861 0.02 + . g393 C.avellana_Jefferson_00018 AUGUSTUS transcript 90856 93861 0.02 + . g393.t1 C.avellana_Jefferson_00018 AUGUSTUS tss 90856 90856 . + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS exon 90856 91454 . + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS start_codon 90934 90936 . + 0 transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS intron 91455 91689 0.98 + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS intron 91781 91914 0.98 + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS intron 92073 92155 0.65 + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS intron 92193 92636 0.35 + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS intron 92723 92810 0.75 + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS intron 92874 93488 0.54 + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS CDS 90934 91454 0.99 + 0 transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS CDS 91690 91780 0.98 + 1 transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS exon 91690 91780 . + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS CDS 91915 92072 0.97 + 0 transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS exon 91915 92072 . + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS CDS 92156 92192 0.37 + 1 transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS exon 92156 92192 . + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS CDS 92637 92722 0.61 + 0 transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS exon 92637 92722 . + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS CDS 92811 92873 0.8 + 1 transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS exon 92811 92873 . + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS CDS 93489 93669 0.63 + 1 transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS exon 93489 93861 . + . transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS stop_codon 93667 93669 . + 0 transcript_id "g393.t1"; gene_id "g393"; C.avellana_Jefferson_00018 AUGUSTUS tts 93861 93861 . + . transcript_id "g393.t1"; gene_id "g393"; # protein sequence = [MGKLLQQSFSKPCPIPFSKPPHSNSPHYAATTTLCFRHRIRCKAVDSSKIDTRPPHSLSDSPGAKKIGPYTGRDPSVK # KPGWLRQRAPQGERYDQVKESLSRLSLNTVCEEAQCPNIGECWNGGGDGVATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTANAIASWGVD # YIVLTSVDRDDIPDGGSGHFAQTVKAMKKLKPEIMVECLTSDFRGNLKDVQTLVHSGLDVFAHNIETVKRLQRIVRDPRAGSWVPFPCKLVFKSNLFF # HWLVFGFLIFPSGTSVPWKVDFDGATSVFRNVFRRVLFCSACHICYEQSLSVLKHAKLSKEGMITKTSLMLGLGESDDELKEAMADLRAIDVDILTLG # QYLQVS] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/7 # CDS introns: 0/6 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g393 ### # start gene g394 C.avellana_Jefferson_00018 AUGUSTUS gene 96976 97495 0.12 + . g394 C.avellana_Jefferson_00018 AUGUSTUS transcript 96976 97495 0.12 + . g394.t1 C.avellana_Jefferson_00018 AUGUSTUS tss 96976 96976 . + . transcript_id "g394.t1"; gene_id "g394"; C.avellana_Jefferson_00018 AUGUSTUS exon 96976 97495 . + . transcript_id "g394.t1"; gene_id "g394"; C.avellana_Jefferson_00018 AUGUSTUS start_codon 97060 97062 . + 0 transcript_id "g394.t1"; gene_id "g394"; C.avellana_Jefferson_00018 AUGUSTUS CDS 97060 97218 0.34 + 0 transcript_id "g394.t1"; gene_id "g394"; C.avellana_Jefferson_00018 AUGUSTUS stop_codon 97216 97218 . + 0 transcript_id "g394.t1"; gene_id "g394"; C.avellana_Jefferson_00018 AUGUSTUS tts 97495 97495 . + . transcript_id "g394.t1"; gene_id "g394"; # protein sequence = [MGSAPAQIPTSFGHELRACLRCRLVKTYDQVNTLGLKDGLPDCDRVFLLPVQ] # Evidence for and against this transcript: # % of transcript supported by hints (any source): 0 # CDS exons: 0/1 # CDS introns: 0/0 # 5'UTR exons and introns: 0/1 # 3'UTR exons and introns: 0/1 # hint groups fully obeyed: 0 # incompatible hint groups: 0 # end gene g394 ### # start gene g395 C.avellana_Jefferson_00018 AUGUSTUS gene 103576 104731 0.03 + . g395 C.avellana_Jefferson_00018 AUGUSTUS transcript 103576 104731 0.03 + . g395.t1 C.avellana_Jefferson_00018 AUGUSTUS tss 103576 103576 . + . transcript_id "g395.t1"; gene_id "g395"; C.avellana_Jefferson_00018 AUGUSTUS exon 103576 104061 . + . transcript_id "g395.t1"; gene_id "g395"; C.avellana_Jefferson_00018 AUGUSTUS start_codon 103791 103793 . + 0 transcript_id "g395.t1"; gene_id "g395"; C.avellana_Jefferson_00018 AUGUSTUS intron 104062 104212 0.97 + . transcript_id "g395.t1"; gene_id "g395"; C.avellana_Jefferson_00018 AUGUSTUS intron 104437 104535 1 + . transcript_id "g395.t1"; gene_id "g395"; C.avellana_Jefferson_00018 AUGUSTUS CDS 103791 104061 0.72 + 0 transcript_id "g395.t1"; gene_id "g395"; C.avellana_Jefferson_00018 AUGUSTUS CDS 104213 104436